Wall clock time and date at job start Mon Mar 30 2020 01:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 117.00121 * 2 1 4 4 O 1.20827 * 120.00028 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99850 * 180.02562 * 3 2 1 6 6 H 1.08993 * 115.56605 * 39.74897 * 5 3 2 7 7 C 1.53003 * 117.49442 * 185.44619 * 5 3 2 8 8 C 1.53000 * 60.03453 * 107.49797 * 7 5 3 9 9 H 1.09001 * 117.50175 * 107.47410 * 8 7 5 10 10 C 1.50701 * 117.49628 * 252.49764 * 8 7 5 11 11 O 1.21291 * 120.00331 * 78.81858 * 10 8 7 12 12 N 1.34777 * 119.99758 * 258.82026 * 10 8 7 13 13 C 1.37096 * 119.99909 * 180.02562 * 12 10 8 14 14 H 1.08001 * 119.99993 * 320.89373 * 13 12 10 15 15 C 1.38949 * 120.00120 * 140.88983 * 13 12 10 16 16 N 1.31410 * 120.00226 * 156.06893 * 15 13 12 17 17 Si 1.86802 * 120.00073 * 336.07247 * 15 13 12 18 18 H 1.48505 * 109.46975 * 96.09340 * 17 15 13 19 19 H 1.48493 * 109.47202 * 216.09288 * 17 15 13 20 20 H 1.48497 * 109.47063 * 336.09589 * 17 15 13 21 21 C 1.46494 * 120.00147 * 359.97438 * 12 10 8 22 22 C 1.50703 * 109.47470 * 86.55567 * 21 12 10 23 23 O 1.20833 * 119.99179 * 0.02562 * 22 21 12 24 24 O 1.34220 * 120.00454 * 179.97438 * 22 21 12 25 25 H 1.08993 * 109.47197 * 300.00503 * 1 2 3 26 26 H 1.08999 * 109.46699 * 60.00169 * 1 2 3 27 27 H 1.09000 * 109.46992 * 180.02562 * 1 2 3 28 28 H 1.08999 * 117.50310 * 359.97438 * 7 5 3 29 29 H 1.09007 * 117.49324 * 215.00189 * 7 5 3 30 30 H 0.96994 * 120.00608 * 180.02562 * 16 15 13 31 31 H 1.08995 * 109.47371 * 206.55828 * 21 12 10 32 32 H 1.09005 * 109.47566 * 326.55521 * 21 12 10 33 33 H 0.96700 * 116.99743 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 4.0754 0.5446 -0.6296 7 6 4.2012 2.6609 0.1283 8 6 4.2535 1.6841 1.3047 9 1 5.2143 1.2229 1.5337 10 6 3.3735 1.9775 2.4924 11 8 2.1912 1.7100 2.4520 12 7 3.9004 2.5373 3.5994 13 6 3.1000 2.8038 4.6801 14 1 2.0982 3.1787 4.5307 15 6 3.5775 2.5914 5.9676 16 7 3.0559 3.2490 6.9787 17 14 4.9611 1.3712 6.2611 18 1 6.2576 2.0941 6.3055 19 1 4.7394 0.6727 7.5527 20 1 4.9864 0.3768 5.1585 21 6 5.3285 2.8599 3.6484 22 6 5.5543 4.2305 3.0638 23 8 4.6180 4.8721 2.6493 24 8 6.7951 4.7389 3.0046 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.5304 3.5158 0.2130 29 1 5.1277 2.8427 -0.4166 30 1 3.3895 3.1011 7.8774 31 1 5.6689 2.8460 4.6838 32 1 5.8877 2.1226 3.0723 33 1 6.8900 5.6217 2.6216 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737577569.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:23 Heat of formation + Delta-G solvation = -186.262929 kcal Electronic energy + Delta-G solvation = -21845.493995 eV Core-core repulsion = 18258.591108 eV Total energy + Delta-G solvation = -3586.902887 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.93496 -41.23904 -40.20667 -37.97899 -37.15620 -36.79074 -36.46310 -34.21800 -29.73139 -29.17795 -27.91134 -25.45087 -24.45181 -23.16369 -21.58484 -20.43833 -19.34040 -19.14128 -18.93331 -18.08530 -17.75652 -17.47309 -17.11741 -16.67717 -16.51668 -16.03518 -15.49674 -15.11955 -14.63251 -14.52778 -14.18967 -14.05622 -14.04934 -13.51633 -13.15483 -12.91490 -12.89097 -12.53018 -12.34929 -11.96468 -11.74131 -11.72482 -11.68241 -11.62559 -11.43013 -11.08397 -10.54578 -9.91337 -8.56712 -6.23959 1.15881 1.20967 1.24124 1.36348 1.49311 1.59811 1.75508 2.08552 2.18507 2.57928 2.73449 3.01866 3.55357 3.60550 3.66433 3.90053 4.01536 4.12842 4.26470 4.30197 4.33783 4.52719 4.62354 4.71198 4.75991 5.03458 5.42838 5.51088 5.68803 5.98684 6.39803 6.82660 6.89282 7.05163 7.17290 7.69915 8.61214 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.018592 B = 0.007866 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.638236 B = 3558.799560 C = 4389.883790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.361 6.361 3 C 0.493 3.507 4 O -0.546 6.546 5 C -0.134 4.134 6 H 0.197 0.803 7 C -0.108 4.108 8 C -0.167 4.167 9 H 0.189 0.811 10 C 0.486 3.514 11 O -0.593 6.593 12 N -0.454 5.454 13 C -0.339 4.339 14 H 0.026 0.974 15 C 0.009 3.991 16 N -0.907 5.907 17 Si 0.940 3.060 18 H -0.224 1.224 19 H -0.283 1.283 20 H -0.238 1.238 21 C 0.091 3.909 22 C 0.468 3.532 23 O -0.538 6.538 24 O -0.503 6.503 25 H 0.031 0.969 26 H 0.066 0.934 27 H 0.136 0.864 28 H 0.068 0.932 29 H 0.172 0.828 30 H 0.283 0.717 31 H 0.111 0.889 32 H 0.165 0.835 33 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.237 -6.632 -12.944 19.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.277 6.277 3 C 0.338 3.662 4 O -0.436 6.436 5 C -0.153 4.153 6 H 0.214 0.786 7 C -0.145 4.145 8 C -0.187 4.187 9 H 0.206 0.794 10 C 0.277 3.723 11 O -0.476 6.476 12 N -0.176 5.176 13 C -0.467 4.467 14 H 0.044 0.956 15 C -0.194 4.194 16 N -0.543 5.543 17 Si 0.759 3.241 18 H -0.148 1.148 19 H -0.209 1.209 20 H -0.161 1.161 21 C -0.033 4.033 22 C 0.309 3.691 23 O -0.427 6.427 24 O -0.316 6.316 25 H 0.050 0.950 26 H 0.085 0.915 27 H 0.154 0.846 28 H 0.086 0.914 29 H 0.190 0.810 30 H 0.093 0.907 31 H 0.128 0.872 32 H 0.183 0.817 33 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 12.080 -6.615 -12.687 18.725 hybrid contribution -0.942 0.889 0.754 1.499 sum 11.137 -5.726 -11.933 17.298 Atomic orbital electron populations 1.23362 0.75702 1.05227 1.01330 1.86365 1.24280 1.32936 1.84146 1.22983 0.91861 0.81007 0.70336 1.90606 1.67974 1.37922 1.47102 1.22052 0.86983 1.03987 1.02230 0.78560 1.23235 1.03622 0.90758 0.96923 1.22708 1.02142 1.07046 0.86844 0.79373 1.20470 0.88303 0.78619 0.84923 1.90561 1.18916 1.56021 1.82098 1.43170 1.07209 1.53660 1.13513 1.18440 0.98242 1.45249 0.84746 0.95584 1.26366 1.01869 0.97289 0.93845 1.69918 1.45144 1.37995 1.01259 0.85955 0.78858 0.79917 0.79394 1.14781 1.20898 1.16105 1.21817 0.84670 0.92441 1.04404 1.24210 0.80386 0.89615 0.74872 1.90752 1.44882 1.61472 1.45603 1.84472 1.30121 1.39788 1.77196 0.94970 0.91488 0.84564 0.91372 0.81036 0.90714 0.87160 0.81745 0.71331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.13 10.56 113.37 1.20 2.33 16 2 O -0.36 -12.83 10.57 -51.38 -0.54 -13.37 16 3 C 0.49 19.28 5.37 71.24 0.38 19.66 16 4 O -0.55 -26.27 15.20 28.27 0.43 -25.84 16 5 C -0.13 -3.70 6.30 -11.51 -0.07 -3.77 16 6 H 0.20 3.08 8.14 -2.39 -0.02 3.06 16 7 C -0.11 -2.91 9.74 30.60 0.30 -2.61 16 8 C -0.17 -5.05 5.05 -11.51 -0.06 -5.11 16 9 H 0.19 3.43 6.90 -2.39 -0.02 3.42 16 10 C 0.49 23.08 7.25 87.66 0.64 23.71 16 11 O -0.59 -34.59 13.55 15.57 0.21 -34.38 16 12 N -0.45 -22.05 1.65 -639.61 -1.06 -23.10 16 13 C -0.34 -20.53 9.30 84.04 0.78 -19.75 16 14 H 0.03 1.93 7.94 -2.91 -0.02 1.91 16 15 C 0.01 0.50 5.24 84.93 0.44 0.95 16 16 N -0.91 -54.40 13.96 21.66 0.30 -54.10 16 17 Si 0.94 38.20 25.23 68.60 1.73 39.93 16 18 H -0.22 -7.48 6.71 99.48 0.67 -6.81 16 19 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.24 -8.92 7.11 99.48 0.71 -8.21 16 21 C 0.09 3.20 4.50 85.64 0.38 3.58 16 22 C 0.47 16.05 8.36 71.24 0.60 16.65 16 23 O -0.54 -24.00 17.13 21.94 0.38 -23.62 16 24 O -0.50 -11.51 13.42 -51.32 -0.69 -12.20 16 25 H 0.03 1.19 8.13 -2.39 -0.02 1.17 16 26 H 0.07 1.85 8.13 -2.39 -0.02 1.83 16 27 H 0.14 2.89 8.14 -2.39 -0.02 2.87 16 28 H 0.07 2.55 7.68 -2.39 -0.02 2.53 16 29 H 0.17 2.54 8.14 -2.38 -0.02 2.52 16 30 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 31 H 0.11 3.94 3.80 -2.39 -0.01 3.93 16 32 H 0.17 3.71 6.33 -2.38 -0.02 3.69 16 33 H 0.43 6.05 9.10 -74.06 -0.67 5.37 16 Total: -1.00 -95.96 294.04 5.81 -90.15 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.46 Total: 20.89 kcal Atomic # 6 Polarization: 31.05 SS G_CDS: 4.59 Total: 35.64 kcal Atomic # 7 Polarization: -76.45 SS G_CDS: -0.75 Total: -77.20 kcal Atomic # 8 Polarization: -109.19 SS G_CDS: -0.22 Total: -109.41 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 1.73 Total: 39.93 kcal Total: -95.96 5.81 -90.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737577569.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.113 kcal (2) G-P(sol) polarization free energy of solvation -95.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds