Wall clock time and date at job start Mon Mar 30 2020 01:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 117.00379 * 2 1 4 4 O 1.20827 * 119.99684 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00215 * 180.02562 * 3 2 1 6 6 N 1.46495 * 109.47239 * 179.97438 * 5 3 2 7 7 C 1.37097 * 120.00118 * 269.99774 * 6 5 3 8 8 H 1.07996 * 120.00306 * 196.00991 * 7 6 5 9 9 C 1.38951 * 120.00193 * 16.00900 * 7 6 5 10 10 N 1.31418 * 119.99769 * 7.17774 * 9 7 6 11 11 Si 1.86794 * 120.00413 * 187.17411 * 9 7 6 12 12 H 1.48497 * 109.47030 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46982 * 120.00063 * 11 9 7 14 14 H 1.48495 * 109.47429 * 240.00142 * 11 9 7 15 15 C 1.34775 * 120.00175 * 89.99599 * 6 5 3 16 16 O 1.21297 * 120.00094 * 5.56723 * 15 6 5 17 17 C 1.50704 * 120.00439 * 185.56397 * 15 6 5 18 18 H 1.09000 * 115.55676 * 58.57831 * 17 15 6 19 19 C 1.52999 * 117.50128 * 204.26836 * 17 15 6 20 20 C 1.52991 * 117.49894 * 272.89497 * 17 15 6 21 21 H 1.09004 * 117.51779 * 145.02916 * 20 17 15 22 22 C 1.50697 * 117.50341 * 359.97438 * 20 17 15 23 23 O 1.20834 * 119.99790 * 353.15301 * 22 20 17 24 24 O 1.34226 * 120.00483 * 173.14806 * 22 20 17 25 25 H 1.08997 * 109.47536 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47116 * 300.00011 * 1 2 3 27 27 H 1.09001 * 109.47159 * 59.99792 * 1 2 3 28 28 H 1.09003 * 109.47387 * 59.99388 * 5 3 2 29 29 H 1.09006 * 109.46733 * 299.99677 * 5 3 2 30 30 H 0.96993 * 120.00219 * 185.00614 * 10 9 7 31 31 H 1.08992 * 117.49594 * 0.02562 * 19 17 15 32 32 H 1.09004 * 117.51461 * 214.97243 * 19 17 15 33 33 H 0.96696 * 117.00436 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6796 -0.0011 7 6 4.1757 3.3367 -1.1886 8 1 4.7204 4.2690 -1.2072 9 6 3.6716 2.8031 -2.3683 10 7 2.8906 1.7467 -2.3307 11 14 4.1036 3.5871 -4.0078 12 1 4.9923 4.7547 -3.7792 13 1 4.8022 2.5938 -4.8627 14 1 2.8605 4.0357 -4.6849 15 6 4.1732 3.3261 1.1659 16 8 4.1005 2.7201 2.2140 17 6 4.4777 4.8021 1.1685 18 1 3.7276 5.4379 0.6982 19 6 5.2247 5.3672 2.3783 20 6 5.9430 5.2213 1.0353 21 1 6.1573 6.1330 0.4775 22 6 6.9715 4.1268 0.9120 23 8 6.6432 2.9715 1.0445 24 8 8.2524 4.4352 0.6549 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 3.9557 0.7807 -0.8908 29 1 3.9563 0.7805 0.8892 30 1 2.5976 1.3306 -3.1563 31 1 5.4963 4.6714 3.1720 32 1 4.9663 6.3748 2.7040 33 1 8.8755 3.6992 0.5843 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737606149.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:30 Heat of formation + Delta-G solvation = -161.345955 kcal Electronic energy + Delta-G solvation = -22074.653932 eV Core-core repulsion = 18488.831526 eV Total energy + Delta-G solvation = -3585.822406 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.22494 -39.22936 -38.24641 -36.17219 -35.40751 -34.96431 -34.43315 -31.44200 -28.56096 -26.35541 -25.42306 -24.70698 -22.76387 -20.54226 -19.94593 -19.05122 -17.98389 -17.20068 -16.48824 -16.37033 -15.43227 -15.32538 -15.13476 -14.97765 -14.55412 -14.22704 -14.06877 -13.23259 -12.96041 -12.46901 -12.24188 -12.13562 -11.71489 -11.36583 -11.29269 -11.17892 -11.14882 -10.72362 -10.53851 -10.44252 -10.24893 -10.07600 -9.96715 -9.73513 -9.47494 -8.94000 -8.53248 -7.88194 -6.39906 -3.95389 2.54203 3.08415 3.18014 3.21765 3.28631 3.59280 3.82794 3.96576 4.10515 4.24253 4.70025 5.02536 5.16246 5.23955 5.46845 5.62054 5.76532 5.84273 5.90939 6.02667 6.16909 6.22347 6.39360 6.43129 6.66275 6.88043 6.95397 7.33577 7.57220 7.69909 8.31893 8.35920 9.03874 9.23717 9.46274 9.87328 10.63953 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.016550 B = 0.008919 C = 0.006667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.432729 B = 3138.586269 C = 4199.007153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.374 6.374 3 C 0.492 3.508 4 O -0.513 6.513 5 C 0.162 3.838 6 N -0.422 5.422 7 C -0.309 4.309 8 H 0.099 0.901 9 C 0.032 3.968 10 N -0.886 5.886 11 Si 0.931 3.069 12 H -0.269 1.269 13 H -0.280 1.280 14 H -0.281 1.281 15 C 0.514 3.486 16 O -0.595 6.595 17 C -0.114 4.114 18 H 0.134 0.866 19 C -0.128 4.128 20 C -0.156 4.156 21 H 0.133 0.867 22 C 0.498 3.502 23 O -0.477 6.477 24 O -0.522 6.522 25 H 0.084 0.916 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.130 0.870 29 H 0.078 0.922 30 H 0.271 0.729 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.221 3.122 2.055 5.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.292 6.292 3 C 0.334 3.666 4 O -0.399 6.399 5 C 0.036 3.964 6 N -0.140 5.140 7 C -0.437 4.437 8 H 0.117 0.883 9 C -0.170 4.170 10 N -0.527 5.527 11 Si 0.758 3.242 12 H -0.194 1.194 13 H -0.206 1.206 14 H -0.207 1.207 15 C 0.302 3.698 16 O -0.480 6.480 17 C -0.135 4.135 18 H 0.151 0.849 19 C -0.166 4.166 20 C -0.175 4.175 21 H 0.151 0.849 22 C 0.338 3.662 23 O -0.362 6.362 24 O -0.334 6.334 25 H 0.103 0.897 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.148 0.852 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 3.427 3.032 2.470 5.200 hybrid contribution 0.257 0.015 -1.368 1.392 sum 3.684 3.047 1.102 4.906 Atomic orbital electron populations 1.22899 0.79072 1.01639 1.01446 1.86465 1.21364 1.35653 1.85708 1.23987 0.92312 0.80380 0.69884 1.90480 1.66676 1.36445 1.46305 1.20513 0.86650 0.85444 1.03786 1.43065 1.57665 1.08194 1.05035 1.19683 1.32611 1.07723 0.83636 0.88337 1.25203 0.94783 0.96962 1.00078 1.69620 1.32684 1.22011 1.28398 0.85799 0.78140 0.78966 0.81336 1.19386 1.20620 1.20740 1.18777 0.80936 0.86504 0.83543 1.90514 1.57985 1.67672 1.31860 1.22252 0.92277 0.97576 1.01389 0.84859 1.23045 1.00174 1.02823 0.90530 1.21651 0.91487 0.99116 1.05284 0.84880 1.22244 0.81515 0.89337 0.73059 1.90824 1.79888 1.21284 1.44170 1.84464 1.20120 1.44608 1.84197 0.89748 0.93313 0.92779 0.85201 0.90390 0.91768 0.87391 0.87148 0.73635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 10.56 101.05 1.07 1.87 16 2 O -0.37 -8.50 10.56 -39.26 -0.41 -8.92 16 3 C 0.49 12.76 5.89 36.00 0.21 12.97 16 4 O -0.51 -14.58 15.89 -18.75 -0.30 -14.88 16 5 C 0.16 4.16 5.29 -5.20 -0.03 4.13 16 6 N -0.42 -10.99 1.94 -116.10 -0.23 -11.22 16 7 C -0.31 -7.87 9.24 -14.93 -0.14 -8.01 16 8 H 0.10 2.36 6.49 -52.49 -0.34 2.02 16 9 C 0.03 0.80 5.24 -17.46 -0.09 0.71 16 10 N -0.89 -23.26 8.26 55.50 0.46 -22.81 16 11 Si 0.93 19.78 29.56 -169.99 -5.03 14.75 16 12 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 13 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 14 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 15 C 0.51 12.88 4.64 -10.98 -0.05 12.83 16 16 O -0.59 -16.33 15.92 -5.28 -0.08 -16.42 16 17 C -0.11 -2.25 4.52 -91.77 -0.41 -2.66 16 18 H 0.13 2.46 8.14 -51.93 -0.42 2.04 16 19 C -0.13 -2.01 9.75 -26.73 -0.26 -2.27 16 20 C -0.16 -2.56 5.92 -91.78 -0.54 -3.10 16 21 H 0.13 1.77 8.14 -51.93 -0.42 1.35 16 22 C 0.50 8.98 8.07 36.00 0.29 9.27 16 23 O -0.48 -10.59 14.66 -23.22 -0.34 -10.93 16 24 O -0.52 -7.30 13.42 -39.25 -0.53 -7.82 16 25 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 27 H 0.05 1.01 8.13 -51.93 -0.42 0.59 16 28 H 0.13 3.36 6.26 -51.93 -0.33 3.03 16 29 H 0.08 1.97 7.35 -51.93 -0.38 1.59 16 30 H 0.27 6.82 8.32 -40.82 -0.34 6.48 16 31 H 0.11 1.86 7.88 -51.93 -0.41 1.45 16 32 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.41 3.96 9.10 45.56 0.41 4.38 16 LS Contribution 294.88 15.07 4.44 4.44 Total: -1.00 -34.72 294.88 -4.68 -39.41 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -2.71 Total: 8.67 kcal Atomic # 6 Polarization: 25.68 SS G_CDS: 0.04 Total: 25.72 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.23 Total: -34.02 kcal Atomic # 8 Polarization: -57.31 SS G_CDS: -1.66 Total: -58.97 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -34.72 -4.68 -39.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737606149.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.941 kcal (2) G-P(sol) polarization free energy of solvation -34.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds