Wall clock time and date at job start Mon Mar 30 2020 01:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 117.00379 * 2 1 4 4 O 1.20827 * 119.99684 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00215 * 180.02562 * 3 2 1 6 6 N 1.46495 * 109.47239 * 179.97438 * 5 3 2 7 7 C 1.37097 * 120.00118 * 269.99774 * 6 5 3 8 8 H 1.07996 * 120.00306 * 196.00991 * 7 6 5 9 9 C 1.38951 * 120.00193 * 16.00900 * 7 6 5 10 10 N 1.31418 * 119.99769 * 7.17774 * 9 7 6 11 11 Si 1.86794 * 120.00413 * 187.17411 * 9 7 6 12 12 H 1.48497 * 109.47030 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46982 * 120.00063 * 11 9 7 14 14 H 1.48495 * 109.47429 * 240.00142 * 11 9 7 15 15 C 1.34775 * 120.00175 * 89.99599 * 6 5 3 16 16 O 1.21297 * 120.00094 * 5.56723 * 15 6 5 17 17 C 1.50704 * 120.00439 * 185.56397 * 15 6 5 18 18 H 1.09000 * 115.55676 * 58.57831 * 17 15 6 19 19 C 1.52999 * 117.50128 * 204.26836 * 17 15 6 20 20 C 1.52991 * 117.49894 * 272.89497 * 17 15 6 21 21 H 1.09004 * 117.51779 * 145.02916 * 20 17 15 22 22 C 1.50697 * 117.50341 * 359.97438 * 20 17 15 23 23 O 1.20834 * 119.99790 * 353.15301 * 22 20 17 24 24 O 1.34226 * 120.00483 * 173.14806 * 22 20 17 25 25 H 1.08997 * 109.47536 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47116 * 300.00011 * 1 2 3 27 27 H 1.09001 * 109.47159 * 59.99792 * 1 2 3 28 28 H 1.09003 * 109.47387 * 59.99388 * 5 3 2 29 29 H 1.09006 * 109.46733 * 299.99677 * 5 3 2 30 30 H 0.96993 * 120.00219 * 185.00614 * 10 9 7 31 31 H 1.08992 * 117.49594 * 0.02562 * 19 17 15 32 32 H 1.09004 * 117.51461 * 214.97243 * 19 17 15 33 33 H 0.96696 * 117.00436 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6796 -0.0011 7 6 4.1757 3.3367 -1.1886 8 1 4.7204 4.2690 -1.2072 9 6 3.6716 2.8031 -2.3683 10 7 2.8906 1.7467 -2.3307 11 14 4.1036 3.5871 -4.0078 12 1 4.9923 4.7547 -3.7792 13 1 4.8022 2.5938 -4.8627 14 1 2.8605 4.0357 -4.6849 15 6 4.1732 3.3261 1.1659 16 8 4.1005 2.7201 2.2140 17 6 4.4777 4.8021 1.1685 18 1 3.7276 5.4379 0.6982 19 6 5.2247 5.3672 2.3783 20 6 5.9430 5.2213 1.0353 21 1 6.1573 6.1330 0.4775 22 6 6.9715 4.1268 0.9120 23 8 6.6432 2.9715 1.0445 24 8 8.2524 4.4352 0.6549 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 3.9557 0.7807 -0.8908 29 1 3.9563 0.7805 0.8892 30 1 2.5976 1.3306 -3.1563 31 1 5.4963 4.6714 3.1720 32 1 4.9663 6.3748 2.7040 33 1 8.8755 3.6992 0.5843 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737606149.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:29 Heat of formation + Delta-G solvation = -185.475567 kcal Electronic energy + Delta-G solvation = -22075.700270 eV Core-core repulsion = 18488.831526 eV Total energy + Delta-G solvation = -3586.868744 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.74910 -41.07909 -39.96785 -37.70557 -37.03975 -36.61025 -36.37624 -33.38294 -30.44118 -27.99534 -27.05454 -26.34207 -24.36164 -22.01099 -21.68225 -20.86672 -19.44295 -18.77472 -18.40893 -18.19087 -17.23792 -17.11572 -16.71233 -16.51670 -16.09485 -15.93278 -15.80192 -14.87573 -14.63441 -14.24750 -13.91123 -13.80923 -13.28243 -13.11959 -12.95483 -12.83401 -12.57244 -12.49615 -12.40412 -12.04899 -11.62871 -11.57603 -11.53491 -11.47242 -11.35903 -10.92816 -10.43865 -9.84992 -8.30036 -5.91501 1.14122 1.41979 1.45973 1.58963 1.71385 1.86228 2.12967 2.21252 2.37404 2.75671 2.99316 3.26241 3.72829 3.83979 4.08695 4.28580 4.35531 4.41347 4.43192 4.50859 4.60969 4.72076 4.82799 4.91100 4.95084 5.12250 5.40877 5.66462 5.69771 5.77905 6.38516 7.09181 7.12583 7.25520 7.55984 7.97581 8.74484 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.016550 B = 0.008919 C = 0.006667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.432729 B = 3138.586269 C = 4199.007153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.378 6.378 3 C 0.496 3.504 4 O -0.545 6.545 5 C 0.160 3.840 6 N -0.434 5.434 7 C -0.322 4.322 8 H 0.113 0.887 9 C -0.016 4.016 10 N -0.913 5.913 11 Si 0.999 3.001 12 H -0.251 1.251 13 H -0.279 1.279 14 H -0.288 1.288 15 C 0.502 3.498 16 O -0.633 6.633 17 C -0.151 4.151 18 H 0.145 0.855 19 C -0.101 4.101 20 C -0.142 4.142 21 H 0.176 0.824 22 C 0.496 3.504 23 O -0.529 6.529 24 O -0.505 6.505 25 H 0.133 0.867 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.123 0.877 29 H 0.070 0.930 30 H 0.270 0.730 31 H 0.086 0.914 32 H 0.161 0.839 33 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.059 5.031 1.418 7.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.295 6.295 3 C 0.340 3.660 4 O -0.434 6.434 5 C 0.034 3.966 6 N -0.152 5.152 7 C -0.449 4.449 8 H 0.131 0.869 9 C -0.214 4.214 10 N -0.555 5.555 11 Si 0.822 3.178 12 H -0.174 1.174 13 H -0.204 1.204 14 H -0.215 1.215 15 C 0.293 3.707 16 O -0.522 6.522 17 C -0.172 4.172 18 H 0.163 0.837 19 C -0.138 4.138 20 C -0.161 4.161 21 H 0.193 0.807 22 C 0.339 3.661 23 O -0.418 6.418 24 O -0.318 6.318 25 H 0.151 0.849 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.140 0.860 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.178 0.822 33 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 4.304 4.945 1.834 6.808 hybrid contribution 0.007 -0.670 -1.115 1.301 sum 4.311 4.275 0.719 6.113 Atomic orbital electron populations 1.23282 0.76270 1.04795 1.01155 1.86424 1.24071 1.33921 1.85058 1.23937 0.92368 0.80699 0.69044 1.90440 1.67353 1.37587 1.48019 1.20435 0.87020 0.86288 1.02842 1.43301 1.57890 1.08118 1.05881 1.20059 1.32897 1.08291 0.83655 0.86936 1.26136 0.94543 0.97411 1.03328 1.69718 1.33574 1.23262 1.28922 0.84770 0.77675 0.78596 0.76710 1.17381 1.20439 1.21488 1.19681 0.79686 0.88752 0.82599 1.90461 1.59430 1.69298 1.32979 1.22162 0.94971 0.94052 1.05997 0.83726 1.23205 0.97270 1.04345 0.88993 1.21906 0.88655 0.99471 1.06083 0.80670 1.22661 0.82731 0.88953 0.71782 1.90826 1.80880 1.23471 1.46633 1.84414 1.18933 1.45344 1.83115 0.84872 0.93061 0.93645 0.85951 0.91246 0.91992 0.89496 0.82177 0.71434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.38 10.56 113.37 1.20 2.57 16 2 O -0.38 -17.39 10.56 -51.41 -0.54 -17.93 16 3 C 0.50 26.47 5.89 71.23 0.42 26.89 16 4 O -0.55 -31.81 15.89 21.96 0.35 -31.46 16 5 C 0.16 8.58 5.29 85.63 0.45 9.04 16 6 N -0.43 -23.16 1.94 -639.61 -1.24 -24.40 16 7 C -0.32 -16.41 9.24 84.04 0.78 -15.64 16 8 H 0.11 5.25 6.49 -2.91 -0.02 5.23 16 9 C -0.02 -0.79 5.24 84.93 0.44 -0.35 16 10 N -0.91 -48.73 8.26 21.66 0.18 -48.55 16 11 Si 1.00 39.94 29.56 68.60 2.03 41.96 16 12 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 13 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 14 H -0.29 -11.80 7.11 99.48 0.71 -11.09 16 15 C 0.50 25.62 4.64 87.66 0.41 26.02 16 16 O -0.63 -36.02 15.92 7.27 0.12 -35.90 16 17 C -0.15 -5.76 4.52 -11.54 -0.05 -5.81 16 18 H 0.15 5.10 8.14 -2.39 -0.02 5.08 16 19 C -0.10 -2.89 9.75 30.59 0.30 -2.59 16 20 C -0.14 -4.24 5.92 -11.54 -0.07 -4.31 16 21 H 0.18 3.74 8.14 -2.39 -0.02 3.72 16 22 C 0.50 17.06 8.07 71.23 0.57 17.64 16 23 O -0.53 -23.71 14.66 26.21 0.38 -23.32 16 24 O -0.50 -12.72 13.42 -51.38 -0.69 -13.41 16 25 H 0.13 3.41 8.14 -2.39 -0.02 3.39 16 26 H 0.05 1.79 8.13 -2.39 -0.02 1.78 16 27 H 0.04 1.69 8.13 -2.39 -0.02 1.67 16 28 H 0.12 6.63 6.26 -2.39 -0.01 6.62 16 29 H 0.07 3.73 7.35 -2.38 -0.02 3.71 16 30 H 0.27 13.77 8.32 -92.71 -0.77 13.00 16 31 H 0.09 2.90 7.88 -2.39 -0.02 2.88 16 32 H 0.16 2.96 8.14 -2.38 -0.02 2.95 16 33 H 0.42 7.32 9.10 -74.06 -0.67 6.64 16 Total: -1.00 -78.21 294.88 5.52 -72.69 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 0.49 Total: 26.86 kcal Atomic # 6 Polarization: 49.02 SS G_CDS: 4.45 Total: 53.46 kcal Atomic # 7 Polarization: -71.89 SS G_CDS: -1.06 Total: -72.95 kcal Atomic # 8 Polarization: -121.65 SS G_CDS: -0.38 Total: -122.03 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.96 kcal Total: -78.21 5.52 -72.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737606149.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.784 kcal (2) G-P(sol) polarization free energy of solvation -78.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds