Wall clock time and date at job start Mon Mar 30 2020 01:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99438 * 2 1 4 4 O 1.20823 * 120.00346 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99692 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.47310 * 179.97438 * 5 3 2 7 7 C 1.37087 * 120.00503 * 270.00316 * 6 5 3 8 8 H 1.08001 * 120.00100 * 197.83537 * 7 6 5 9 9 C 1.38956 * 119.99905 * 17.82918 * 7 6 5 10 10 N 1.31408 * 119.99854 * 3.33604 * 9 7 6 11 11 Si 1.86803 * 119.99770 * 183.33697 * 9 7 6 12 12 H 1.48494 * 109.47251 * 90.00405 * 11 9 7 13 13 H 1.48499 * 109.46662 * 210.00102 * 11 9 7 14 14 H 1.48497 * 109.47444 * 329.99791 * 11 9 7 15 15 C 1.34778 * 119.99524 * 89.99932 * 6 5 3 16 16 O 1.21291 * 120.00452 * 354.92866 * 15 6 5 17 17 C 1.50705 * 119.99898 * 174.92693 * 15 6 5 18 18 H 1.08996 * 115.55011 * 324.45004 * 17 15 6 19 19 C 1.52998 * 117.49888 * 178.78054 * 17 15 6 20 20 C 1.52999 * 117.49750 * 110.15694 * 17 15 6 21 21 H 1.08995 * 117.50111 * 214.97623 * 20 17 15 22 22 C 1.50700 * 117.50020 * 0.02562 * 20 17 15 23 23 O 1.20828 * 119.99907 * 353.39688 * 22 20 17 24 24 O 1.34232 * 120.00193 * 173.39678 * 22 20 17 25 25 H 1.08998 * 109.47639 * 299.99867 * 1 2 3 26 26 H 1.09001 * 109.46825 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47448 * 60.00420 * 1 2 3 28 28 H 1.09005 * 109.47564 * 299.99974 * 5 3 2 29 29 H 1.09005 * 109.47589 * 60.00036 * 5 3 2 30 30 H 0.96998 * 119.99621 * 184.99852 * 10 9 7 31 31 H 1.09008 * 117.50000 * 0.02562 * 19 17 15 32 32 H 1.08999 * 117.50130 * 145.00182 * 19 17 15 33 33 H 0.96698 * 117.00243 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 0.0006 6 7 3.9815 2.6799 -0.0002 7 6 4.1763 3.3366 -1.1876 8 1 4.7462 4.2537 -1.2104 9 6 3.6407 2.8221 -2.3621 10 7 2.8926 1.7423 -2.3252 11 14 3.9840 3.6655 -3.9931 12 1 5.2143 3.0936 -4.5968 13 1 2.8368 3.4522 -4.9117 14 1 4.1735 5.1209 -3.7677 15 6 4.1721 3.3268 1.1668 16 8 3.9116 2.7757 2.2154 17 6 4.7088 4.7351 1.1687 18 1 5.4438 4.9591 0.3957 19 6 4.8759 5.4255 2.5238 20 6 3.7512 5.8554 1.5797 21 1 3.8561 6.8168 1.0770 22 6 2.3438 5.4662 1.9521 23 8 1.9737 4.3254 1.8057 24 8 1.5014 6.3869 2.4466 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 -0.8901 28 1 3.9556 0.7811 0.8908 29 1 3.9564 0.7807 -0.8892 30 1 2.5786 1.3415 -3.1508 31 1 4.5981 4.8610 3.4140 32 1 5.7208 6.1038 2.6423 33 1 0.6090 6.0898 2.6713 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737606151.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:34 Heat of formation + Delta-G solvation = -156.840102 kcal Electronic energy + Delta-G solvation = -22306.318168 eV Core-core repulsion = 18720.691151 eV Total energy + Delta-G solvation = -3585.627017 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.06015 -39.08669 -38.16025 -36.09818 -35.21495 -34.83255 -34.33373 -31.42241 -28.53289 -26.32736 -25.26178 -24.66290 -22.71634 -20.49823 -19.81108 -19.03394 -17.80940 -17.00852 -16.50887 -16.21557 -15.34047 -15.25844 -15.06806 -14.89351 -14.35685 -14.14755 -13.83712 -13.20129 -12.98816 -12.36325 -12.15615 -12.12347 -11.66435 -11.31853 -11.24183 -11.09638 -10.97130 -10.64479 -10.55309 -10.42740 -10.12842 -10.02004 -9.70714 -9.58403 -9.35626 -8.79498 -8.52794 -7.85105 -6.34935 -3.94357 2.78110 3.10859 3.19161 3.22672 3.37890 3.62045 3.94280 3.98197 4.19834 4.42168 4.69657 5.02982 5.20815 5.35456 5.50117 5.74108 5.83677 5.88469 5.92415 6.09679 6.10603 6.27393 6.40901 6.50304 6.66385 6.96739 7.07729 7.35002 7.66902 7.80705 8.33046 8.56873 9.06676 9.41263 9.49562 9.88744 10.68187 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.014608 B = 0.009901 C = 0.007400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.311418 B = 2827.319812 C = 3782.708031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.380 6.380 3 C 0.486 3.514 4 O -0.490 6.490 5 C 0.165 3.835 6 N -0.429 5.429 7 C -0.317 4.317 8 H 0.101 0.899 9 C 0.034 3.966 10 N -0.887 5.887 11 Si 0.932 3.068 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.271 1.271 15 C 0.513 3.487 16 O -0.587 6.587 17 C -0.124 4.124 18 H 0.131 0.869 19 C -0.133 4.133 20 C -0.140 4.140 21 H 0.133 0.867 22 C 0.480 3.520 23 O -0.444 6.444 24 O -0.528 6.528 25 H 0.047 0.953 26 H 0.082 0.918 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.130 0.870 30 H 0.271 0.729 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.256 3.954 3.381 5.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.298 6.298 3 C 0.326 3.674 4 O -0.374 6.374 5 C 0.039 3.961 6 N -0.148 5.148 7 C -0.444 4.444 8 H 0.118 0.882 9 C -0.168 4.168 10 N -0.528 5.528 11 Si 0.759 3.241 12 H -0.204 1.204 13 H -0.210 1.210 14 H -0.196 1.196 15 C 0.302 3.698 16 O -0.471 6.471 17 C -0.145 4.145 18 H 0.148 0.852 19 C -0.170 4.170 20 C -0.160 4.160 21 H 0.151 0.849 22 C 0.318 3.682 23 O -0.325 6.325 24 O -0.341 6.341 25 H 0.065 0.935 26 H 0.100 0.900 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.148 0.852 30 H 0.082 0.918 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 1.027 3.683 3.579 5.237 hybrid contribution -0.944 0.395 -1.118 1.516 sum 0.083 4.078 2.461 4.764 Atomic orbital electron populations 1.22836 0.79389 1.01324 1.01277 1.86454 1.21116 1.36097 1.86103 1.23821 0.92208 0.80476 0.70864 1.90549 1.66187 1.35972 1.44693 1.20547 0.87479 0.84964 1.03102 1.43135 1.58016 1.08579 1.05027 1.19665 1.31781 1.09020 0.83976 0.88156 1.25194 0.94767 0.96813 1.00029 1.69611 1.33836 1.21074 1.28264 0.85838 0.77726 0.79376 0.81141 1.20354 1.21002 1.19587 1.18796 0.81441 0.85764 0.83837 1.90521 1.56411 1.68278 1.31927 1.22261 1.00501 0.92564 0.99190 0.85161 1.23035 0.97384 1.01758 0.94842 1.21516 0.86542 1.00997 1.06960 0.84919 1.22299 0.87144 0.83427 0.75329 1.91006 1.75752 1.19671 1.46099 1.84445 1.27377 1.44922 1.77337 0.93472 0.89988 0.93021 0.91125 0.85202 0.91807 0.87331 0.87310 0.73906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.89 10.55 101.05 1.07 1.96 16 2 O -0.38 -8.91 10.57 -39.26 -0.41 -9.32 16 3 C 0.49 12.90 5.88 36.00 0.21 13.11 16 4 O -0.49 -14.44 14.93 -22.63 -0.34 -14.77 16 5 C 0.16 4.18 5.21 -5.19 -0.03 4.16 16 6 N -0.43 -11.06 2.11 -116.09 -0.25 -11.31 16 7 C -0.32 -8.01 9.27 -14.94 -0.14 -8.15 16 8 H 0.10 2.32 6.03 -52.49 -0.32 2.00 16 9 C 0.03 0.86 5.29 -17.47 -0.09 0.77 16 10 N -0.89 -23.44 8.19 55.50 0.45 -22.98 16 11 Si 0.93 19.78 29.56 -169.99 -5.02 14.76 16 12 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 13 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 14 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 15 C 0.51 12.65 5.26 -10.98 -0.06 12.59 16 16 O -0.59 -15.85 14.63 -16.16 -0.24 -16.09 16 17 C -0.12 -2.40 5.10 -91.77 -0.47 -2.87 16 18 H 0.13 2.23 6.86 -51.93 -0.36 1.87 16 19 C -0.13 -2.07 9.75 -26.73 -0.26 -2.33 16 20 C -0.14 -2.44 6.30 -91.77 -0.58 -3.02 16 21 H 0.13 1.87 8.14 -51.93 -0.42 1.45 16 22 C 0.48 9.66 8.07 36.01 0.29 9.95 16 23 O -0.44 -11.23 13.12 -27.62 -0.36 -11.60 16 24 O -0.53 -8.43 13.42 -39.26 -0.53 -8.95 16 25 H 0.05 0.90 8.13 -51.93 -0.42 0.48 16 26 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 28 H 0.07 1.71 7.50 -51.93 -0.39 1.32 16 29 H 0.13 3.27 6.27 -51.93 -0.33 2.94 16 30 H 0.27 6.89 8.32 -40.82 -0.34 6.55 16 31 H 0.11 1.88 7.67 -51.92 -0.40 1.48 16 32 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.40 4.90 9.10 45.56 0.41 5.32 16 LS Contribution 290.98 15.07 4.39 4.39 Total: -1.00 -35.44 290.98 -4.98 -40.42 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -2.62 Total: 9.30 kcal Atomic # 6 Polarization: 26.22 SS G_CDS: -0.05 Total: 26.17 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.21 Total: -34.29 kcal Atomic # 8 Polarization: -58.86 SS G_CDS: -1.88 Total: -60.74 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -35.44 -4.98 -40.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737606151.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.422 kcal (2) G-P(sol) polarization free energy of solvation -35.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds