Wall clock time and date at job start Mon Mar 30 2020 01:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99438 * 2 1 4 4 O 1.20823 * 120.00346 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99692 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.47310 * 179.97438 * 5 3 2 7 7 C 1.37087 * 120.00503 * 270.00316 * 6 5 3 8 8 H 1.08001 * 120.00100 * 197.83537 * 7 6 5 9 9 C 1.38956 * 119.99905 * 17.82918 * 7 6 5 10 10 N 1.31408 * 119.99854 * 3.33604 * 9 7 6 11 11 Si 1.86803 * 119.99770 * 183.33697 * 9 7 6 12 12 H 1.48494 * 109.47251 * 90.00405 * 11 9 7 13 13 H 1.48499 * 109.46662 * 210.00102 * 11 9 7 14 14 H 1.48497 * 109.47444 * 329.99791 * 11 9 7 15 15 C 1.34778 * 119.99524 * 89.99932 * 6 5 3 16 16 O 1.21291 * 120.00452 * 354.92866 * 15 6 5 17 17 C 1.50705 * 119.99898 * 174.92693 * 15 6 5 18 18 H 1.08996 * 115.55011 * 324.45004 * 17 15 6 19 19 C 1.52998 * 117.49888 * 178.78054 * 17 15 6 20 20 C 1.52999 * 117.49750 * 110.15694 * 17 15 6 21 21 H 1.08995 * 117.50111 * 214.97623 * 20 17 15 22 22 C 1.50700 * 117.50020 * 0.02562 * 20 17 15 23 23 O 1.20828 * 119.99907 * 353.39688 * 22 20 17 24 24 O 1.34232 * 120.00193 * 173.39678 * 22 20 17 25 25 H 1.08998 * 109.47639 * 299.99867 * 1 2 3 26 26 H 1.09001 * 109.46825 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47448 * 60.00420 * 1 2 3 28 28 H 1.09005 * 109.47564 * 299.99974 * 5 3 2 29 29 H 1.09005 * 109.47589 * 60.00036 * 5 3 2 30 30 H 0.96998 * 119.99621 * 184.99852 * 10 9 7 31 31 H 1.09008 * 117.50000 * 0.02562 * 19 17 15 32 32 H 1.08999 * 117.50130 * 145.00182 * 19 17 15 33 33 H 0.96698 * 117.00243 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 0.0006 6 7 3.9815 2.6799 -0.0002 7 6 4.1763 3.3366 -1.1876 8 1 4.7462 4.2537 -1.2104 9 6 3.6407 2.8221 -2.3621 10 7 2.8926 1.7423 -2.3252 11 14 3.9840 3.6655 -3.9931 12 1 5.2143 3.0936 -4.5968 13 1 2.8368 3.4522 -4.9117 14 1 4.1735 5.1209 -3.7677 15 6 4.1721 3.3268 1.1668 16 8 3.9116 2.7757 2.2154 17 6 4.7088 4.7351 1.1687 18 1 5.4438 4.9591 0.3957 19 6 4.8759 5.4255 2.5238 20 6 3.7512 5.8554 1.5797 21 1 3.8561 6.8168 1.0770 22 6 2.3438 5.4662 1.9521 23 8 1.9737 4.3254 1.8057 24 8 1.5014 6.3869 2.4466 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 -0.8901 28 1 3.9556 0.7811 0.8908 29 1 3.9564 0.7807 -0.8892 30 1 2.5786 1.3415 -3.1508 31 1 4.5981 4.8610 3.4140 32 1 5.7208 6.1038 2.6423 33 1 0.6090 6.0898 2.6713 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737606151.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:33 Heat of formation + Delta-G solvation = -181.354777 kcal Electronic energy + Delta-G solvation = -22307.381204 eV Core-core repulsion = 18720.691151 eV Total energy + Delta-G solvation = -3586.690054 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.66628 -40.97202 -39.92502 -37.68499 -36.90833 -36.55237 -36.28806 -33.34395 -30.41782 -28.01043 -26.95738 -26.31078 -24.29843 -21.99518 -21.63280 -20.84478 -19.34586 -18.64887 -18.37921 -18.11835 -17.14527 -17.07075 -16.66297 -16.59840 -16.07854 -15.82512 -15.45133 -14.90954 -14.66223 -14.18141 -13.91662 -13.78681 -13.23496 -13.05804 -12.90232 -12.81398 -12.48526 -12.46023 -12.34096 -12.09212 -11.59595 -11.47917 -11.43344 -11.32513 -11.26573 -10.80783 -10.40584 -9.80152 -8.23841 -5.88813 1.26684 1.46356 1.48046 1.59278 1.78567 1.98475 2.06694 2.33108 2.39894 2.82998 3.04035 3.28451 3.77288 3.91660 4.12013 4.30005 4.35775 4.39382 4.44843 4.48814 4.60478 4.76041 4.86044 4.90858 5.00837 5.16149 5.46114 5.71919 5.77883 5.87286 6.41238 7.13020 7.16679 7.42361 7.60687 8.01977 8.79691 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.014608 B = 0.009901 C = 0.007400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.311418 B = 2827.319812 C = 3782.708031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.384 6.384 3 C 0.485 3.515 4 O -0.526 6.526 5 C 0.162 3.838 6 N -0.444 5.444 7 C -0.330 4.330 8 H 0.121 0.879 9 C -0.016 4.016 10 N -0.916 5.916 11 Si 1.000 3.000 12 H -0.265 1.265 13 H -0.299 1.299 14 H -0.257 1.257 15 C 0.503 3.497 16 O -0.623 6.623 17 C -0.154 4.154 18 H 0.155 0.845 19 C -0.098 4.098 20 C -0.141 4.141 21 H 0.175 0.825 22 C 0.475 3.525 23 O -0.507 6.507 24 O -0.512 6.512 25 H 0.043 0.957 26 H 0.132 0.868 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.127 0.873 30 H 0.267 0.733 31 H 0.086 0.914 32 H 0.164 0.836 33 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.331 6.015 3.047 7.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.301 6.301 3 C 0.328 3.672 4 O -0.412 6.412 5 C 0.037 3.963 6 N -0.163 5.163 7 C -0.457 4.457 8 H 0.139 0.861 9 C -0.214 4.214 10 N -0.558 5.558 11 Si 0.824 3.176 12 H -0.190 1.190 13 H -0.225 1.225 14 H -0.181 1.181 15 C 0.294 3.706 16 O -0.509 6.509 17 C -0.174 4.174 18 H 0.172 0.828 19 C -0.136 4.136 20 C -0.160 4.160 21 H 0.193 0.807 22 C 0.316 3.684 23 O -0.393 6.393 24 O -0.325 6.325 25 H 0.062 0.938 26 H 0.150 0.850 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.145 0.855 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.182 0.818 33 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 2.111 5.769 3.269 6.958 hybrid contribution -1.396 -0.281 -0.905 1.687 sum 0.715 5.488 2.364 6.018 Atomic orbital electron populations 1.23167 0.76912 1.04425 1.00590 1.86419 1.23557 1.34619 1.85548 1.24025 0.92670 0.80654 0.69886 1.90516 1.67011 1.37191 1.46493 1.20541 0.87181 0.85895 1.02730 1.43405 1.58359 1.08621 1.05903 1.20160 1.31901 1.09680 0.83909 0.86107 1.26132 0.94546 0.97380 1.03353 1.69732 1.34981 1.22519 1.28570 0.84797 0.77214 0.79043 0.76499 1.19025 1.22546 1.18079 1.19718 0.80377 0.87674 0.82863 1.90475 1.57767 1.69710 1.32993 1.22284 1.02423 0.89838 1.02871 0.82755 1.23205 0.97833 1.00513 0.92001 1.21834 0.84960 1.01477 1.07708 0.80738 1.23001 0.88508 0.82871 0.73976 1.91007 1.77114 1.22239 1.48922 1.84406 1.28250 1.43529 1.76331 0.93828 0.84962 0.94061 0.91164 0.85539 0.92299 0.89577 0.81824 0.72086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.64 10.55 113.37 1.20 2.84 16 2 O -0.38 -18.38 10.57 -51.42 -0.54 -18.93 16 3 C 0.49 26.66 5.88 71.23 0.42 27.08 16 4 O -0.53 -32.03 14.93 25.68 0.38 -31.65 16 5 C 0.16 8.56 5.21 85.63 0.45 9.01 16 6 N -0.44 -23.28 2.11 -639.58 -1.35 -24.63 16 7 C -0.33 -16.55 9.27 84.04 0.78 -15.77 16 8 H 0.12 5.37 6.03 -2.91 -0.02 5.35 16 9 C -0.02 -0.81 5.29 84.93 0.45 -0.36 16 10 N -0.92 -49.37 8.19 21.66 0.18 -49.20 16 11 Si 1.00 39.99 29.56 68.60 2.03 42.02 16 12 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 13 H -0.30 -12.55 7.11 99.48 0.71 -11.84 16 14 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 15 C 0.50 24.98 5.26 87.66 0.46 25.44 16 16 O -0.62 -34.56 14.63 17.69 0.26 -34.30 16 17 C -0.15 -5.61 5.10 -11.54 -0.06 -5.67 16 18 H 0.15 4.78 6.86 -2.39 -0.02 4.77 16 19 C -0.10 -2.74 9.75 30.59 0.30 -2.44 16 20 C -0.14 -4.45 6.30 -11.54 -0.07 -4.53 16 21 H 0.18 4.03 8.14 -2.39 -0.02 4.01 16 22 C 0.48 18.66 8.07 71.24 0.57 19.23 16 23 O -0.51 -26.15 13.12 30.44 0.40 -25.75 16 24 O -0.51 -15.40 13.42 -51.44 -0.69 -16.09 16 25 H 0.04 1.68 8.13 -2.39 -0.02 1.66 16 26 H 0.13 3.67 8.14 -2.39 -0.02 3.65 16 27 H 0.04 1.65 8.13 -2.38 -0.02 1.63 16 28 H 0.07 3.58 7.50 -2.38 -0.02 3.56 16 29 H 0.13 6.63 6.27 -2.38 -0.01 6.62 16 30 H 0.27 13.89 8.32 -92.71 -0.77 13.12 16 31 H 0.09 2.84 7.67 -2.38 -0.02 2.82 16 32 H 0.16 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.42 9.72 9.10 -74.06 -0.67 9.04 16 Total: -1.00 -80.35 290.98 5.65 -74.70 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: 0.49 Total: 28.99 kcal Atomic # 6 Polarization: 50.34 SS G_CDS: 4.49 Total: 54.83 kcal Atomic # 7 Polarization: -72.65 SS G_CDS: -1.17 Total: -73.83 kcal Atomic # 8 Polarization: -126.53 SS G_CDS: -0.19 Total: -126.72 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Total: -80.35 5.65 -74.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737606151.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.656 kcal (2) G-P(sol) polarization free energy of solvation -80.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds