Wall clock time and date at job start Mon Mar 30 2020 01:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34226 * 117.00154 * 2 1 4 4 O 1.20823 * 120.00247 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00096 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47414 * 180.02562 * 5 3 2 7 7 C 1.36903 * 119.99954 * 292.59233 * 6 5 3 8 8 H 1.08001 * 120.00095 * 318.89417 * 7 6 5 9 9 C 1.38987 * 120.00012 * 138.89681 * 7 6 5 10 10 N 1.31423 * 119.99744 * 337.84175 * 9 7 6 11 11 Si 1.86801 * 120.00118 * 157.84662 * 9 7 6 12 12 H 1.48496 * 109.46847 * 89.99692 * 11 9 7 13 13 H 1.48497 * 109.47017 * 209.99981 * 11 9 7 14 14 H 1.48500 * 109.46715 * 330.00108 * 11 9 7 15 15 C 1.34774 * 120.00166 * 112.58907 * 6 5 3 16 16 O 1.21777 * 120.00217 * 178.05196 * 15 6 5 17 17 C 1.46264 * 120.00214 * 358.32793 * 15 6 5 18 18 C 1.34147 * 119.24082 * 320.64650 * 17 15 6 19 19 O 1.34996 * 121.66140 * 180.61332 * 18 17 15 20 20 C 1.43246 * 116.76199 * 342.62836 * 19 18 17 21 21 C 1.53545 * 108.10271 * 45.53373 * 20 19 18 22 22 O 1.36186 * 119.24469 * 140.37353 * 17 15 6 23 23 H 1.09000 * 109.46952 * 300.00319 * 1 2 3 24 24 H 1.09006 * 109.47193 * 59.99605 * 1 2 3 25 25 H 1.08994 * 109.47508 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47351 * 59.99558 * 5 3 2 27 27 H 1.08999 * 109.46866 * 299.99924 * 5 3 2 28 28 H 0.96999 * 119.99708 * 185.07283 * 10 9 7 29 29 H 1.08003 * 119.17102 * 0.59420 * 18 17 15 30 30 H 1.08999 * 109.73640 * 165.18592 * 20 19 18 31 31 H 1.09000 * 109.73420 * 285.88468 * 20 19 18 32 32 H 1.09002 * 109.74863 * 61.47830 * 21 20 19 33 33 H 1.08996 * 109.75510 * 182.21293 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6796 0.0002 7 6 3.7387 3.4659 -1.0939 8 1 3.8841 3.0685 -2.0875 9 6 3.3048 4.7756 -0.9258 10 7 2.7182 5.1348 0.1940 11 14 3.5554 6.0251 -2.2916 12 1 2.3772 6.0133 -3.1954 13 1 3.7131 7.3786 -1.7014 14 1 4.7750 5.6765 -3.0637 15 6 4.6033 3.1980 1.0778 16 8 4.9804 4.3559 1.0650 17 6 4.8303 2.3682 2.2607 18 6 3.8758 1.5112 2.6530 19 8 4.0287 0.7311 3.7441 20 6 5.3634 0.5667 4.2375 21 6 6.0346 1.9474 4.2670 22 8 6.0082 2.4793 2.9353 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.9558 0.7808 -0.8908 27 1 3.9564 0.7805 0.8892 28 1 2.3497 6.0276 0.2837 29 1 2.9617 1.4438 2.0816 30 1 5.3349 0.1498 5.2442 31 1 5.9202 -0.0992 3.5782 32 1 5.4896 2.6076 4.9417 33 1 7.0670 1.8481 4.6021 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737856880.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:25 Heat of formation + Delta-G solvation = -156.242210 kcal Electronic energy + Delta-G solvation = -22147.450300 eV Core-core repulsion = 18561.849209 eV Total energy + Delta-G solvation = -3585.601091 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.21679 -41.25714 -39.90463 -38.00532 -37.30136 -36.01554 -34.37557 -32.62054 -30.13133 -29.84217 -27.71678 -26.88292 -25.74401 -22.85827 -21.84981 -21.02782 -19.29197 -18.99845 -18.59328 -18.33012 -17.73941 -17.21078 -16.83898 -16.56663 -16.51874 -15.80392 -15.62834 -15.20471 -15.02379 -14.92836 -14.28944 -14.09690 -14.01763 -13.45255 -13.04114 -12.94725 -12.84268 -12.71737 -12.66475 -12.15296 -11.87392 -11.63320 -11.53006 -11.37937 -10.87652 -10.42537 -9.37699 -9.07668 -8.22639 -5.97302 0.50779 1.36017 1.37065 1.45310 1.52453 1.73019 1.97547 2.25245 2.36272 2.61961 3.18887 3.29650 3.51223 3.88161 3.96627 4.05096 4.11898 4.13231 4.29713 4.39099 4.42642 4.47267 4.48195 4.67241 4.75652 4.90257 5.45451 5.48703 5.80156 6.09607 6.41477 6.85335 6.96751 7.07880 7.47111 8.08381 8.86495 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.015353 B = 0.009452 C = 0.006314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.303756 B = 2961.468496 C = 4433.558878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.364 6.364 3 C 0.430 3.570 4 O -0.495 6.495 5 C 0.084 3.916 6 N -0.430 5.430 7 C -0.366 4.366 8 H 0.095 0.905 9 C 0.028 3.972 10 N -0.849 5.849 11 Si 0.973 3.027 12 H -0.267 1.267 13 H -0.294 1.294 14 H -0.259 1.259 15 C 0.519 3.481 16 O -0.571 6.571 17 C -0.054 4.054 18 C -0.016 4.016 19 O -0.309 6.309 20 C 0.012 3.988 21 C 0.004 3.996 22 O -0.315 6.315 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.139 0.861 26 H 0.131 0.869 27 H 0.136 0.864 28 H 0.258 0.742 29 H 0.164 0.836 30 H 0.161 0.839 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.388 -15.132 5.714 16.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.281 6.281 3 C 0.270 3.730 4 O -0.380 6.380 5 C -0.040 4.040 6 N -0.152 5.152 7 C -0.493 4.493 8 H 0.113 0.887 9 C -0.181 4.181 10 N -0.481 5.481 11 Si 0.797 3.203 12 H -0.192 1.192 13 H -0.220 1.220 14 H -0.183 1.183 15 C 0.309 3.691 16 O -0.453 6.453 17 C -0.103 4.103 18 C -0.082 4.082 19 O -0.222 6.222 20 C -0.062 4.062 21 C -0.070 4.070 22 O -0.229 6.229 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.157 0.843 26 H 0.148 0.852 27 H 0.154 0.846 28 H 0.067 0.933 29 H 0.181 0.819 30 H 0.178 0.822 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.349 -14.101 5.881 15.338 hybrid contribution -0.487 1.218 -0.407 1.373 sum 0.862 -12.883 5.474 14.025 Atomic orbital electron populations 1.23448 0.75683 1.05444 1.01744 1.86498 1.24333 1.32685 1.84586 1.24790 0.93231 0.81627 0.73365 1.90823 1.66868 1.37195 1.43109 1.21931 0.86975 0.87155 1.07944 1.43008 1.49396 1.08460 1.14295 1.19202 1.49089 0.94837 0.86132 0.88747 1.26095 0.92820 1.00635 0.98534 1.70020 1.30735 1.19213 1.28180 0.85281 0.79137 0.77488 0.78364 1.19234 1.21978 1.18319 1.17326 0.81661 0.86732 0.83412 1.90627 1.54191 1.19125 1.81308 1.20558 0.91104 0.99883 0.98793 1.22916 0.99809 0.93290 0.92186 1.86049 1.31267 1.63689 1.41230 1.24076 0.81188 0.96712 1.04212 1.24092 1.06216 0.95399 0.81329 1.86384 1.28907 1.78777 1.28846 0.92997 0.92957 0.84255 0.85193 0.84640 0.93339 0.81923 0.82165 0.88690 0.91319 0.82596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.56 113.37 1.20 1.96 16 2 O -0.36 -11.59 10.56 -51.38 -0.54 -12.13 16 3 C 0.43 17.45 6.37 71.24 0.45 17.90 16 4 O -0.50 -25.22 15.37 21.97 0.34 -24.88 16 5 C 0.08 3.29 5.46 85.64 0.47 3.76 16 6 N -0.43 -22.29 2.36 -644.55 -1.52 -23.81 16 7 C -0.37 -20.73 8.12 84.08 0.68 -20.05 16 8 H 0.09 4.99 7.92 -2.91 -0.02 4.97 16 9 C 0.03 1.66 4.24 84.93 0.36 2.02 16 10 N -0.85 -54.19 11.80 21.67 0.26 -53.94 16 11 Si 0.97 47.33 29.61 68.60 2.03 49.37 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 13 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 14 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 15 C 0.52 28.81 6.65 86.33 0.57 29.39 16 16 O -0.57 -37.32 14.80 3.12 0.05 -37.28 16 17 C -0.05 -2.41 5.99 23.42 0.14 -2.27 16 18 C -0.02 -0.61 8.28 66.89 0.55 -0.05 16 19 O -0.31 -9.25 10.47 -69.21 -0.72 -9.97 16 20 C 0.01 0.25 7.29 72.17 0.53 0.78 16 21 C 0.00 0.11 7.31 72.17 0.53 0.64 16 22 O -0.31 -12.56 10.47 -74.45 -0.78 -13.34 16 23 H 0.05 1.39 8.13 -2.39 -0.02 1.37 16 24 H 0.05 1.41 8.13 -2.38 -0.02 1.39 16 25 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.13 4.23 8.14 -2.39 -0.02 4.21 16 27 H 0.14 4.62 4.29 -2.39 -0.01 4.61 16 28 H 0.26 15.91 8.32 -92.71 -0.77 15.14 16 29 H 0.16 6.55 4.75 -2.91 -0.01 6.53 16 30 H 0.16 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.16 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -86.19 287.45 5.74 -80.45 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 1.15 Total: 11.45 kcal Atomic # 6 Polarization: 28.60 SS G_CDS: 5.48 Total: 34.09 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -1.26 Total: -77.74 kcal Atomic # 8 Polarization: -95.95 SS G_CDS: -1.66 Total: -97.61 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.37 kcal Total: -86.19 5.74 -80.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737856880.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.789 kcal (2) G-P(sol) polarization free energy of solvation -86.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds