Wall clock time and date at job start Mon Mar 30 2020 00:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 119.99966 * 2 1 4 4 H 1.48504 * 109.47163 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47215 * 300.00473 * 3 2 1 6 6 H 1.48497 * 109.47334 * 60.00447 * 3 2 1 7 7 C 1.37882 * 119.99639 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99679 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00341 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47243 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00280 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99700 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00039 * 179.97438 * 11 10 9 14 14 O 1.45199 * 109.46937 * 179.97438 * 13 11 10 15 15 C 1.34234 * 116.99947 * 179.97438 * 14 13 11 16 16 O 1.20822 * 120.00090 * 0.02562 * 15 14 13 17 17 C 1.50702 * 119.99997 * 179.72219 * 15 14 13 18 18 H 1.09001 * 115.54933 * 325.67788 * 17 15 14 19 19 C 1.53003 * 117.49540 * 111.37710 * 17 15 14 20 20 C 1.52991 * 117.50010 * 180.02562 * 17 15 14 21 21 H 1.09005 * 117.49711 * 359.97438 * 20 17 15 22 22 C 1.50697 * 117.50089 * 144.99745 * 20 17 15 23 23 O 1.20826 * 120.00134 * 0.02562 * 22 20 17 24 24 O 1.34228 * 120.00053 * 179.97438 * 22 20 17 25 25 H 0.97003 * 119.99929 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47336 * 60.00114 * 9 7 2 27 27 H 1.09002 * 109.46614 * 300.00167 * 9 7 2 28 28 H 0.97000 * 119.99824 * 359.97438 * 10 9 7 29 29 H 1.08997 * 109.47315 * 59.99933 * 13 11 10 30 30 H 1.09002 * 109.47266 * 299.99133 * 13 11 10 31 31 H 1.09002 * 117.49827 * 214.97861 * 19 17 15 32 32 H 1.08998 * 117.49970 * 0.02562 * 19 17 15 33 33 H 0.96702 * 116.99769 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7537 -4.8834 -0.0011 12 8 0.5613 -5.1050 -0.0011 13 6 2.7330 -6.0288 -0.0016 14 8 2.0070 -7.2863 -0.0015 15 6 2.7381 -8.4121 -0.0025 16 8 3.9446 -8.3488 -0.0030 17 6 2.0539 -9.7548 0.0038 18 1 1.1195 -9.8037 0.5630 19 6 2.1679 -10.6117 -1.2586 20 6 2.9423 -11.0003 0.0029 21 1 4.0218 -10.8486 -0.0027 22 6 2.4585 -12.2008 0.7748 23 8 1.4043 -12.1557 1.3636 24 8 3.1981 -13.3204 0.8074 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5568 -0.8903 27 1 0.6247 -2.5570 0.8897 28 1 3.1566 -3.4355 -0.0009 29 1 3.3597 -5.9715 0.8883 30 1 3.3595 -5.9708 -0.8917 31 1 1.3083 -11.2245 -1.5302 32 1 2.7380 -10.2044 -2.0936 33 1 2.8462 -14.0643 1.3153 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739076087.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:08 Heat of formation + Delta-G solvation = -214.724710 kcal Electronic energy + Delta-G solvation = -19462.455923 eV Core-core repulsion = 15874.318841 eV Total energy + Delta-G solvation = -3588.137082 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.11374 -41.31161 -40.40895 -38.32469 -37.34761 -36.76042 -36.19012 -34.42212 -30.97430 -28.80526 -27.19689 -25.49856 -24.46979 -22.31261 -21.66184 -21.17441 -19.70934 -19.18502 -18.85381 -18.01783 -17.82271 -17.67770 -16.99986 -16.93891 -16.66533 -16.22015 -15.98663 -15.11243 -14.82350 -14.49261 -14.30644 -14.00105 -13.71920 -13.48989 -13.35275 -12.91410 -12.75925 -12.66807 -12.22407 -12.07269 -12.03662 -11.95064 -11.84243 -11.59658 -11.46942 -10.92665 -10.83351 -9.93758 -8.29886 -6.46346 0.72489 0.97658 1.11587 1.44816 1.45215 1.54582 1.58899 1.95337 2.34495 2.51694 2.56663 3.05581 3.22342 3.45749 3.59611 3.74282 3.99392 4.04673 4.06590 4.25259 4.56100 4.74360 4.83588 5.06152 5.16699 5.21577 5.41679 5.52417 5.62682 5.81978 6.47533 6.63057 6.77598 6.92148 7.20394 7.35609 8.82480 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.061627 B = 0.002597 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.239832 B =10778.578906 C =11001.379104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.555 4.555 8 H 0.087 0.913 9 C 0.265 3.735 10 N -0.698 5.698 11 C 0.498 3.502 12 O -0.585 6.585 13 C 0.060 3.940 14 O -0.343 6.343 15 C 0.499 3.501 16 O -0.519 6.519 17 C -0.153 4.153 18 H 0.147 0.853 19 C -0.085 4.085 20 C -0.134 4.134 21 H 0.160 0.840 22 C 0.520 3.480 23 O -0.544 6.544 24 O -0.501 6.501 25 H 0.269 0.731 26 H -0.007 1.007 27 H -0.008 1.008 28 H 0.413 0.587 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.750 -23.619 -1.884 26.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.593 4.593 8 H 0.105 0.895 9 C 0.143 3.857 10 N -0.350 5.350 11 C 0.284 3.716 12 O -0.465 6.465 13 C -0.016 4.016 14 O -0.258 6.258 15 C 0.343 3.657 16 O -0.408 6.408 17 C -0.172 4.172 18 H 0.165 0.835 19 C -0.122 4.122 20 C -0.152 4.152 21 H 0.177 0.823 22 C 0.363 3.637 23 O -0.435 6.435 24 O -0.315 6.315 25 H 0.078 0.922 26 H 0.011 0.989 27 H 0.010 0.990 28 H 0.250 0.750 29 H 0.143 0.857 30 H 0.148 0.852 31 H 0.156 0.844 32 H 0.157 0.843 33 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 9.993 -23.273 -1.942 25.403 hybrid contribution 0.017 0.721 0.654 0.974 sum 10.011 -22.552 -1.288 24.708 Atomic orbital electron populations 1.70140 1.08263 1.28561 1.49939 1.26066 0.95783 1.03920 0.93887 0.85095 0.79114 0.77298 0.77610 1.17564 1.20515 1.20587 1.21640 0.94444 0.90334 1.52863 0.89515 1.18639 0.88608 0.83848 0.94605 1.46033 1.11747 1.04688 1.72486 1.20718 0.89309 0.84767 0.76798 1.90697 1.19012 1.85317 1.51487 1.22806 0.92507 0.78831 1.07488 1.86540 1.41267 1.14536 1.83465 1.22715 0.85559 0.85808 0.71590 1.90667 1.15638 1.87949 1.46531 1.21714 1.02333 0.84562 1.08559 0.83499 1.23450 1.02008 0.97144 0.89605 1.21766 1.01686 0.89231 1.02555 0.82273 1.22089 0.80750 0.83709 0.77111 1.90771 1.25051 1.83684 1.44010 1.84447 1.52385 1.24417 1.70277 0.92216 0.98895 0.99047 0.75035 0.85675 0.85183 0.84368 0.84350 0.70350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.47 13.29 21.45 0.28 -55.18 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.99 41.66 29.54 68.60 2.03 43.69 16 4 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 5 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.56 -29.46 9.28 25.60 0.24 -29.22 16 8 H 0.09 4.12 7.60 -2.91 -0.02 4.10 16 9 C 0.27 14.25 5.43 85.63 0.46 14.71 16 10 N -0.70 -28.39 5.55 -466.80 -2.59 -30.98 16 11 C 0.50 19.70 7.91 87.66 0.69 20.39 16 12 O -0.58 -29.38 16.50 15.76 0.26 -29.12 16 13 C 0.06 1.66 5.94 71.23 0.42 2.09 16 14 O -0.34 -10.21 9.76 -45.10 -0.44 -10.65 16 15 C 0.50 12.02 7.74 71.24 0.55 12.57 16 16 O -0.52 -13.31 16.01 21.98 0.35 -12.95 16 17 C -0.15 -2.80 5.81 -11.54 -0.07 -2.86 16 18 H 0.15 2.94 7.67 -2.39 -0.02 2.92 16 19 C -0.09 -0.94 9.94 30.61 0.30 -0.64 16 20 C -0.13 -1.87 5.81 -11.53 -0.07 -1.94 16 21 H 0.16 2.05 7.67 -2.38 -0.02 2.03 16 22 C 0.52 7.96 8.11 71.23 0.58 8.54 16 23 O -0.54 -12.13 17.02 21.96 0.37 -11.76 16 24 O -0.50 -4.80 13.42 -51.40 -0.69 -5.49 16 25 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 26 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 27 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 28 H 0.41 13.35 8.32 -92.71 -0.77 12.58 16 29 H 0.13 2.84 8.13 -2.39 -0.02 2.82 16 30 H 0.13 2.83 8.13 -2.39 -0.02 2.81 16 31 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.43 0.46 9.10 -74.06 -0.67 -0.22 16 Total: -1.00 -79.66 311.34 2.89 -76.77 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -0.27 Total: 11.40 kcal Atomic # 6 Polarization: 20.70 SS G_CDS: 3.58 Total: 24.28 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -2.30 Total: -86.16 kcal Atomic # 8 Polarization: -69.82 SS G_CDS: -0.14 Total: -69.97 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -79.66 2.89 -76.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739076087.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.957 kcal (2) G-P(sol) polarization free energy of solvation -79.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds