Wall clock time and date at job start Mon Mar 30 2020 00:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00047 * 2 1 4 4 H 1.48509 * 109.46696 * 239.99680 * 3 2 1 5 5 H 1.48503 * 109.46701 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47533 * 119.99638 * 3 2 1 7 7 C 1.37882 * 120.00174 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00108 * 179.73078 * 7 2 1 9 9 C 1.50694 * 119.99909 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47267 * 179.72443 * 9 7 2 11 11 C 1.34777 * 120.00314 * 180.02562 * 10 9 7 12 12 O 1.21289 * 119.99957 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00372 * 179.97438 * 11 10 9 14 14 O 1.45202 * 109.47217 * 180.02562 * 13 11 10 15 15 C 1.34229 * 116.99739 * 180.02562 * 14 13 11 16 16 O 1.20828 * 120.00448 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99804 * 180.02562 * 15 14 13 18 18 H 1.08997 * 115.55297 * 347.85787 * 17 15 14 19 19 C 1.53002 * 117.49768 * 202.19584 * 17 15 14 20 20 C 1.53001 * 117.50009 * 133.53381 * 17 15 14 21 21 H 1.08999 * 117.49976 * 214.97635 * 20 17 15 22 22 C 1.50700 * 117.49967 * 359.97438 * 20 17 15 23 23 O 1.20830 * 120.00080 * 96.63159 * 22 20 17 24 24 O 1.34224 * 120.00139 * 276.63372 * 22 20 17 25 25 H 0.96993 * 120.00027 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.47750 * 299.72970 * 9 7 2 27 27 H 1.09003 * 109.47080 * 59.72389 * 9 7 2 28 28 H 0.97005 * 120.00303 * 359.97438 * 10 9 7 29 29 H 1.08995 * 109.47205 * 300.00297 * 13 11 10 30 30 H 1.08996 * 109.46682 * 60.00025 * 13 11 10 31 31 H 1.09004 * 117.49957 * 359.97438 * 19 17 15 32 32 H 1.09002 * 117.50351 * 144.99415 * 19 17 15 33 33 H 0.96698 * 117.00439 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0039 9 6 1.2511 -2.4991 0.0017 10 7 2.2031 -3.6126 -0.0046 11 6 1.7539 -4.8833 -0.0052 12 8 0.5614 -5.1050 -0.0011 13 6 2.7331 -6.0288 -0.0123 14 8 2.0071 -7.2863 -0.0123 15 6 2.7382 -8.4120 -0.0176 16 8 3.9448 -8.3488 -0.0227 17 6 2.0541 -9.7547 -0.0186 18 1 0.9848 -9.7377 0.1921 19 6 2.8548 -10.9559 0.4883 20 6 2.5627 -10.8061 -1.0068 21 1 1.8281 -11.4810 -1.4461 22 6 3.7092 -10.4195 -1.9053 23 8 4.8405 -10.7179 -1.6034 24 8 3.4736 -9.7437 -3.0408 25 1 -0.4850 0.8400 -0.0004 26 1 0.6284 -2.5585 0.8944 27 1 0.6204 -2.5553 -0.8855 28 1 3.1568 -3.4354 -0.0090 29 1 3.3557 -5.9691 -0.9049 30 1 3.3638 -5.9729 0.8749 31 1 3.8766 -10.7750 0.8221 32 1 2.3123 -11.7291 1.0324 33 1 4.2408 -9.5176 -3.5844 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739076088.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:10 Heat of formation + Delta-G solvation = -185.714827 kcal Electronic energy + Delta-G solvation = -19967.978784 eV Core-core repulsion = 16381.099664 eV Total energy + Delta-G solvation = -3586.879120 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.29145 -40.19642 -38.82337 -37.39589 -36.34927 -35.96084 -34.28012 -32.43660 -29.48106 -27.07320 -26.11876 -24.83535 -22.56899 -21.33614 -20.50406 -19.97212 -18.81717 -17.99812 -17.58183 -16.91169 -16.82867 -16.18219 -15.75785 -15.38234 -15.01120 -14.86521 -14.60957 -14.28493 -13.59734 -13.08774 -13.00925 -12.62379 -12.33095 -12.01010 -11.85865 -11.79171 -11.44650 -11.28297 -11.05366 -10.92965 -10.87811 -10.77508 -10.72656 -10.36430 -9.47818 -9.22396 -8.80001 -8.01997 -6.21295 -4.28999 1.53919 2.01692 2.15790 2.59054 3.12914 3.23138 3.24007 3.28102 3.29503 3.84514 3.99671 4.10522 4.30413 4.48872 4.69585 4.86700 5.04503 5.14451 5.17904 5.19270 5.22660 5.29678 5.52529 6.19749 6.21307 7.19471 7.26901 7.43257 7.49863 7.59387 7.60047 7.89877 8.46479 8.68220 8.92778 9.37409 10.88804 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.040708 B = 0.003052 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.663167 B = 9171.684997 C = 9416.958746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.706 5.706 11 C 0.500 3.500 12 O -0.533 6.533 13 C 0.049 3.951 14 O -0.319 6.319 15 C 0.485 3.515 16 O -0.503 6.503 17 C -0.143 4.143 18 H 0.153 0.847 19 C -0.109 4.109 20 C -0.131 4.131 21 H 0.157 0.843 22 C 0.506 3.494 23 O -0.495 6.495 24 O -0.511 6.511 25 H 0.267 0.733 26 H 0.030 0.970 27 H 0.030 0.970 28 H 0.393 0.607 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.129 0.871 33 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.891 -21.083 -1.823 21.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.356 5.356 11 C 0.283 3.717 12 O -0.411 6.411 13 C -0.028 4.028 14 O -0.233 6.233 15 C 0.327 3.673 16 O -0.392 6.392 17 C -0.162 4.162 18 H 0.171 0.829 19 C -0.146 4.146 20 C -0.150 4.150 21 H 0.175 0.825 22 C 0.347 3.653 23 O -0.381 6.381 24 O -0.323 6.323 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.226 0.774 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.140 0.860 32 H 0.147 0.853 33 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 5.175 -21.197 -1.496 21.871 hybrid contribution 1.466 1.323 -0.450 2.025 sum 6.641 -19.874 -1.946 21.044 Atomic orbital electron populations 1.69959 1.06125 1.27562 1.48543 1.24951 0.94937 0.99489 0.94565 0.86443 0.79397 0.82153 0.78740 1.20025 1.21024 1.20015 1.21171 0.93304 0.90310 1.53718 0.91810 1.19181 0.88147 0.81484 0.98063 1.46367 1.11547 1.05317 1.72366 1.19851 0.89082 0.83964 0.78836 1.90714 1.16268 1.84529 1.49562 1.22914 0.94446 0.80788 1.04673 1.86528 1.40074 1.13835 1.82906 1.22473 0.85900 0.86129 0.72762 1.90738 1.15135 1.87781 1.45501 1.21873 1.02718 0.85890 1.05729 0.82881 1.23324 1.02786 0.96404 0.92062 1.21838 0.98936 1.02552 0.91713 0.82530 1.22062 0.89105 0.74356 0.79807 1.90736 1.23896 1.51072 1.72412 1.84499 1.44579 1.69003 1.34232 0.92284 0.95225 0.95204 0.77413 0.88477 0.88360 0.86031 0.85263 0.72646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.72 13.29 55.43 0.74 -24.98 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.55 -14.58 9.28 -34.44 -0.32 -14.89 16 8 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 9 C 0.25 6.53 5.43 -5.20 -0.03 6.50 16 10 N -0.71 -14.48 5.55 -61.47 -0.34 -14.82 16 11 C 0.50 9.94 7.91 -10.98 -0.09 9.85 16 12 O -0.53 -12.92 16.50 -14.11 -0.23 -13.15 16 13 C 0.05 0.75 5.94 36.01 0.21 0.96 16 14 O -0.32 -4.97 9.76 -45.90 -0.45 -5.42 16 15 C 0.48 6.47 7.26 36.01 0.26 6.73 16 16 O -0.50 -7.68 14.87 -18.94 -0.28 -7.96 16 17 C -0.14 -1.27 6.30 -91.77 -0.58 -1.85 16 18 H 0.15 1.01 8.14 -51.93 -0.42 0.59 16 19 C -0.11 -0.76 9.57 -26.69 -0.26 -1.01 16 20 C -0.13 -1.02 6.29 -91.73 -0.58 -1.60 16 21 H 0.16 0.67 8.14 -51.93 -0.42 0.24 16 22 C 0.51 5.50 6.11 36.01 0.22 5.72 16 23 O -0.49 -6.85 17.34 -18.94 -0.33 -7.18 16 24 O -0.51 -4.81 13.42 -39.24 -0.53 -5.33 16 25 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.39 6.77 8.32 -40.82 -0.34 6.43 16 29 H 0.10 1.29 8.13 -51.93 -0.42 0.87 16 30 H 0.10 1.29 8.13 -51.93 -0.42 0.87 16 31 H 0.12 1.11 7.65 -51.93 -0.40 0.71 16 32 H 0.13 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.41 2.30 9.10 45.56 0.41 2.72 16 LS Contribution 309.08 15.07 4.66 4.66 Total: -1.00 -36.72 309.08 -5.85 -42.57 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -2.81 Total: 3.98 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: -1.25 Total: 12.08 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.40 Total: -39.81 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -1.82 Total: -39.04 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -36.72 -5.85 -42.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739076088.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.149 kcal (2) G-P(sol) polarization free energy of solvation -36.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds