Wall clock time and date at job start Mon Mar 30 2020 00:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00047 * 2 1 4 4 H 1.48509 * 109.46696 * 239.99680 * 3 2 1 5 5 H 1.48503 * 109.46701 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47533 * 119.99638 * 3 2 1 7 7 C 1.37882 * 120.00174 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00108 * 179.73078 * 7 2 1 9 9 C 1.50694 * 119.99909 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47267 * 179.72443 * 9 7 2 11 11 C 1.34777 * 120.00314 * 180.02562 * 10 9 7 12 12 O 1.21289 * 119.99957 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00372 * 179.97438 * 11 10 9 14 14 O 1.45202 * 109.47217 * 180.02562 * 13 11 10 15 15 C 1.34229 * 116.99739 * 180.02562 * 14 13 11 16 16 O 1.20828 * 120.00448 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99804 * 180.02562 * 15 14 13 18 18 H 1.08997 * 115.55297 * 347.85787 * 17 15 14 19 19 C 1.53002 * 117.49768 * 202.19584 * 17 15 14 20 20 C 1.53001 * 117.50009 * 133.53381 * 17 15 14 21 21 H 1.08999 * 117.49976 * 214.97635 * 20 17 15 22 22 C 1.50700 * 117.49967 * 359.97438 * 20 17 15 23 23 O 1.20830 * 120.00080 * 96.63159 * 22 20 17 24 24 O 1.34224 * 120.00139 * 276.63372 * 22 20 17 25 25 H 0.96993 * 120.00027 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.47750 * 299.72970 * 9 7 2 27 27 H 1.09003 * 109.47080 * 59.72389 * 9 7 2 28 28 H 0.97005 * 120.00303 * 359.97438 * 10 9 7 29 29 H 1.08995 * 109.47205 * 300.00297 * 13 11 10 30 30 H 1.08996 * 109.46682 * 60.00025 * 13 11 10 31 31 H 1.09004 * 117.49957 * 359.97438 * 19 17 15 32 32 H 1.09002 * 117.50351 * 144.99415 * 19 17 15 33 33 H 0.96698 * 117.00439 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0039 9 6 1.2511 -2.4991 0.0017 10 7 2.2031 -3.6126 -0.0046 11 6 1.7539 -4.8833 -0.0052 12 8 0.5614 -5.1050 -0.0011 13 6 2.7331 -6.0288 -0.0123 14 8 2.0071 -7.2863 -0.0123 15 6 2.7382 -8.4120 -0.0176 16 8 3.9448 -8.3488 -0.0227 17 6 2.0541 -9.7547 -0.0186 18 1 0.9848 -9.7377 0.1921 19 6 2.8548 -10.9559 0.4883 20 6 2.5627 -10.8061 -1.0068 21 1 1.8281 -11.4810 -1.4461 22 6 3.7092 -10.4195 -1.9053 23 8 4.8405 -10.7179 -1.6034 24 8 3.4736 -9.7437 -3.0408 25 1 -0.4850 0.8400 -0.0004 26 1 0.6284 -2.5585 0.8944 27 1 0.6204 -2.5553 -0.8855 28 1 3.1568 -3.4354 -0.0090 29 1 3.3557 -5.9691 -0.9049 30 1 3.3638 -5.9729 0.8749 31 1 3.8766 -10.7750 0.8221 32 1 2.3123 -11.7291 1.0324 33 1 4.2408 -9.5176 -3.5844 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739076088.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:10 Heat of formation + Delta-G solvation = -213.567393 kcal Electronic energy + Delta-G solvation = -19969.186561 eV Core-core repulsion = 16381.099664 eV Total energy + Delta-G solvation = -3588.086897 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.22364 -41.20440 -40.38911 -38.30696 -37.28910 -36.85931 -36.20212 -34.43274 -30.99812 -28.78796 -26.99879 -25.76945 -24.46911 -22.03809 -21.68530 -21.40614 -19.69551 -19.19118 -18.88641 -18.12895 -17.94792 -17.52927 -17.05228 -16.92013 -16.45506 -16.13702 -15.76853 -15.50419 -14.78908 -14.55458 -14.35750 -14.03397 -13.70879 -13.70268 -13.03034 -12.96568 -12.69128 -12.65140 -12.24951 -12.12174 -11.99559 -11.89898 -11.79364 -11.59178 -11.53431 -10.94858 -10.81570 -9.95296 -8.30258 -6.47081 0.65055 1.09680 1.17873 1.44219 1.47350 1.51593 1.55906 1.92389 2.32293 2.51378 2.60149 3.04896 3.34808 3.44515 3.56329 3.70730 3.97567 3.99115 4.10304 4.30718 4.64909 4.77119 4.97724 5.04866 5.15624 5.20802 5.39708 5.52177 5.61062 5.81020 6.45501 6.61267 6.75143 6.87632 7.18598 7.33096 8.81650 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.040708 B = 0.003052 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.663167 B = 9171.684997 C = 9416.958746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.985 3.015 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.559 4.559 8 H 0.085 0.915 9 C 0.267 3.733 10 N -0.698 5.698 11 C 0.501 3.499 12 O -0.581 6.581 13 C 0.061 3.939 14 O -0.338 6.338 15 C 0.480 3.520 16 O -0.528 6.528 17 C -0.154 4.154 18 H 0.179 0.821 19 C -0.094 4.094 20 C -0.129 4.129 21 H 0.199 0.801 22 C 0.499 3.501 23 O -0.534 6.534 24 O -0.514 6.514 25 H 0.270 0.730 26 H -0.006 1.006 27 H -0.007 1.007 28 H 0.412 0.588 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.096 0.904 32 H 0.173 0.827 33 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.072 -21.931 -1.743 23.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.597 4.597 8 H 0.103 0.897 9 C 0.144 3.856 10 N -0.350 5.350 11 C 0.286 3.714 12 O -0.462 6.462 13 C -0.016 4.016 14 O -0.253 6.253 15 C 0.325 3.675 16 O -0.417 6.417 17 C -0.172 4.172 18 H 0.197 0.803 19 C -0.131 4.131 20 C -0.147 4.147 21 H 0.216 0.784 22 C 0.342 3.658 23 O -0.423 6.423 24 O -0.328 6.328 25 H 0.079 0.921 26 H 0.012 0.988 27 H 0.011 0.989 28 H 0.248 0.752 29 H 0.138 0.862 30 H 0.141 0.859 31 H 0.115 0.885 32 H 0.191 0.809 33 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 6.404 -22.067 -1.431 23.022 hybrid contribution 1.096 1.522 -0.510 1.944 sum 7.501 -20.545 -1.942 21.958 Atomic orbital electron populations 1.70118 1.08221 1.28737 1.49703 1.26042 0.95772 1.03831 0.93781 0.85208 0.77908 0.76634 0.79477 1.18710 1.21099 1.18697 1.21583 0.94411 0.90446 1.53278 0.89665 1.18637 0.88547 0.83702 0.94688 1.46049 1.11739 1.04730 1.72466 1.20620 0.89250 0.84655 0.76860 1.90688 1.18775 1.85274 1.51420 1.22737 0.92658 0.79287 1.06932 1.86532 1.41036 1.14391 1.83387 1.23357 0.85849 0.86690 0.71603 1.90728 1.16239 1.88037 1.46739 1.22090 1.03953 0.83710 1.07484 0.80321 1.23516 1.01683 0.95974 0.91892 1.22189 0.98544 1.02247 0.91753 0.78443 1.22772 0.89528 0.73498 0.80022 1.90719 1.25610 1.52676 1.73303 1.84491 1.45544 1.68542 1.34191 0.92148 0.98842 0.98864 0.75171 0.86204 0.85877 0.88511 0.80914 0.71155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.27 13.29 21.45 0.28 -54.99 16 2 C 0.01 0.31 5.46 84.66 0.46 0.77 16 3 Si 0.98 41.69 29.54 68.60 2.03 43.71 16 4 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.29 -12.02 7.11 99.48 0.71 -11.32 16 6 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 7 C -0.56 -29.85 9.28 25.60 0.24 -29.61 16 8 H 0.09 4.08 7.60 -2.91 -0.02 4.06 16 9 C 0.27 14.33 5.43 85.63 0.46 14.80 16 10 N -0.70 -28.79 5.55 -466.79 -2.59 -31.38 16 11 C 0.50 20.02 7.91 87.66 0.69 20.71 16 12 O -0.58 -28.99 16.50 15.74 0.26 -28.73 16 13 C 0.06 1.77 5.94 71.24 0.42 2.19 16 14 O -0.34 -10.21 9.76 -45.05 -0.44 -10.65 16 15 C 0.48 12.18 7.26 71.24 0.52 12.69 16 16 O -0.53 -15.61 14.87 22.14 0.33 -15.28 16 17 C -0.15 -2.34 6.30 -11.54 -0.07 -2.42 16 18 H 0.18 1.77 8.14 -2.39 -0.02 1.76 16 19 C -0.09 -1.04 9.57 30.62 0.29 -0.75 16 20 C -0.13 -1.64 6.29 -11.51 -0.07 -1.71 16 21 H 0.20 0.81 8.14 -2.39 -0.02 0.79 16 22 C 0.50 10.23 6.11 71.24 0.44 10.66 16 23 O -0.53 -14.60 17.34 22.13 0.38 -14.21 16 24 O -0.51 -9.09 13.42 -51.36 -0.69 -9.78 16 25 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 26 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 27 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 28 H 0.41 13.72 8.32 -92.70 -0.77 12.95 16 29 H 0.12 2.97 8.13 -2.39 -0.02 2.95 16 30 H 0.12 3.00 8.13 -2.39 -0.02 2.98 16 31 H 0.10 1.64 7.65 -2.38 -0.02 1.62 16 32 H 0.17 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.43 4.48 9.10 -74.06 -0.67 3.81 16 Total: -1.00 -82.94 309.08 2.68 -80.27 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -0.27 Total: 13.70 kcal Atomic # 6 Polarization: 23.96 SS G_CDS: 3.38 Total: 27.34 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -2.30 Total: -86.37 kcal Atomic # 8 Polarization: -78.50 SS G_CDS: -0.16 Total: -78.66 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.71 kcal Total: -82.94 2.68 -80.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739076088.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.300 kcal (2) G-P(sol) polarization free energy of solvation -82.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds