Wall clock time and date at job start Mon Mar 30 2020 00:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99729 * 2 1 4 4 H 1.48502 * 109.46981 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47039 * 299.99265 * 3 2 1 6 6 H 1.48500 * 109.47274 * 59.99718 * 3 2 1 7 7 C 1.37874 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00012 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00392 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47541 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00221 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99766 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.99984 * 180.02562 * 11 10 9 14 14 O 1.45204 * 109.46816 * 180.02562 * 13 11 10 15 15 C 1.34226 * 116.99674 * 180.02562 * 14 13 11 16 16 O 1.20833 * 120.00277 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00015 * 180.02562 * 15 14 13 18 18 H 1.09002 * 115.55088 * 34.41263 * 17 15 14 19 19 C 1.53005 * 117.49691 * 248.74333 * 17 15 14 20 20 C 1.52999 * 59.99973 * 252.48494 * 19 17 15 21 21 H 1.08995 * 117.49529 * 107.48826 * 20 19 17 22 22 C 1.50693 * 117.50064 * 252.51042 * 20 19 17 23 23 O 1.20828 * 120.00278 * 68.62192 * 22 20 19 24 24 O 1.34229 * 120.00404 * 248.62463 * 22 20 19 25 25 H 0.96998 * 120.00508 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46592 * 59.99714 * 9 7 2 27 27 H 1.08997 * 109.47408 * 300.00466 * 9 7 2 28 28 H 0.97000 * 119.99690 * 0.02562 * 10 9 7 29 29 H 1.08997 * 109.46894 * 60.00379 * 13 11 10 30 30 H 1.08997 * 109.46992 * 299.99952 * 13 11 10 31 31 H 1.09004 * 117.49602 * 359.97438 * 19 17 15 32 32 H 1.09004 * 117.49360 * 144.99546 * 19 17 15 33 33 H 0.96697 * 117.00421 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7539 -4.8834 0.0000 12 8 0.5615 -5.1050 -0.0009 13 6 2.7332 -6.0288 0.0006 14 8 2.0072 -7.2863 -0.0007 15 6 2.7383 -8.4120 0.0001 16 8 3.9449 -8.3487 0.0014 17 6 2.0542 -9.7548 -0.0018 18 1 1.1189 -9.8051 -0.5593 19 6 2.1695 -10.6081 1.2629 20 6 2.9423 -11.0006 0.0021 21 1 4.0216 -10.8492 0.0058 22 6 2.4570 -12.2034 -0.7653 23 8 1.4024 -12.1598 -1.3532 24 8 3.1964 -13.3233 -0.7957 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6240 -2.5568 0.8902 28 1 3.1567 -3.4354 0.0009 29 1 3.3591 -5.9712 0.8911 30 1 3.3605 -5.9709 -0.8889 31 1 2.7406 -10.1985 2.0961 32 1 1.3101 -11.2199 1.5373 33 1 2.8437 -14.0687 -1.3006 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739076089.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:12 Heat of formation + Delta-G solvation = -188.117062 kcal Electronic energy + Delta-G solvation = -19461.216136 eV Core-core repulsion = 15874.232848 eV Total energy + Delta-G solvation = -3586.983288 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.24758 -40.44703 -38.85154 -37.47571 -36.52071 -35.95516 -34.27934 -32.43628 -29.49550 -27.18337 -26.23602 -24.64560 -22.60525 -21.58486 -20.35904 -19.96339 -18.96360 -18.06855 -17.54784 -17.03710 -16.68267 -16.39369 -16.03225 -15.47871 -15.15527 -14.81949 -14.42392 -14.29961 -13.57075 -13.15007 -12.90647 -12.79720 -12.43329 -12.07196 -12.02335 -11.81779 -11.42569 -11.32606 -11.07693 -11.00683 -10.96715 -10.79279 -10.73360 -10.36489 -9.44359 -9.22165 -8.80851 -8.01822 -6.21447 -4.28947 1.48664 1.81372 2.01877 2.65769 3.13054 3.19136 3.21221 3.28456 3.31380 3.87132 3.89852 4.12168 4.30610 4.50143 4.70325 4.77261 5.03131 5.10131 5.14430 5.17468 5.29523 5.34391 5.41025 6.00096 6.18286 7.19942 7.27215 7.41501 7.43516 7.49038 7.60050 7.89855 8.46750 8.68734 8.93306 9.37562 10.88722 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.061721 B = 0.002597 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.546814 B =10779.832642 C =11003.466663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.250 3.750 10 N -0.706 5.706 11 C 0.499 3.501 12 O -0.533 6.533 13 C 0.048 3.952 14 O -0.319 6.319 15 C 0.494 3.506 16 O -0.507 6.507 17 C -0.131 4.131 18 H 0.155 0.845 19 C -0.109 4.109 20 C -0.139 4.139 21 H 0.153 0.847 22 C 0.513 3.487 23 O -0.508 6.508 24 O -0.509 6.509 25 H 0.266 0.734 26 H 0.030 0.970 27 H 0.030 0.970 28 H 0.393 0.607 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.153 -22.901 1.355 24.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.130 3.870 10 N -0.356 5.356 11 C 0.282 3.718 12 O -0.410 6.410 13 C -0.029 4.029 14 O -0.233 6.233 15 C 0.337 3.663 16 O -0.396 6.396 17 C -0.150 4.150 18 H 0.173 0.827 19 C -0.146 4.146 20 C -0.158 4.158 21 H 0.171 0.829 22 C 0.355 3.645 23 O -0.396 6.396 24 O -0.321 6.321 25 H 0.076 0.924 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.226 0.774 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 7.323 -22.500 1.413 23.703 hybrid contribution 0.830 0.633 -0.477 1.148 sum 8.153 -21.867 0.936 23.356 Atomic orbital electron populations 1.69980 1.06119 1.27332 1.48726 1.24958 0.94941 0.99525 0.94611 0.86332 0.79801 0.82817 0.77790 1.19608 1.20756 1.20761 1.21239 0.93361 0.90267 1.53440 0.91706 1.19192 0.88169 0.81527 0.98081 1.46365 1.11545 1.05311 1.72402 1.19860 0.89102 0.83976 0.78881 1.90721 1.16282 1.84512 1.49479 1.22939 0.94454 0.80724 1.04774 1.86544 1.40062 1.13815 1.82887 1.22296 0.85683 0.85859 0.72453 1.90684 1.15238 1.87885 1.45781 1.21729 1.02138 0.85467 1.05618 0.82728 1.23218 1.01842 0.99170 0.90343 1.21711 1.01642 0.90377 1.02033 0.82923 1.22055 0.81377 0.83212 0.77882 1.90773 1.23415 1.83065 1.42316 1.84484 1.52914 1.24258 1.70402 0.92402 0.95216 0.95203 0.77400 0.88287 0.88303 0.85932 0.86038 0.72570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.71 13.29 55.43 0.74 -24.97 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.55 29.54 -169.99 -5.02 15.53 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.54 -14.47 9.28 -34.44 -0.32 -14.79 16 8 H 0.06 1.60 7.60 -52.48 -0.40 1.21 16 9 C 0.25 6.49 5.43 -5.19 -0.03 6.46 16 10 N -0.71 -14.35 5.55 -61.47 -0.34 -14.69 16 11 C 0.50 9.82 7.91 -10.98 -0.09 9.74 16 12 O -0.53 -12.91 16.50 -14.10 -0.23 -13.14 16 13 C 0.05 0.71 5.94 36.01 0.21 0.92 16 14 O -0.32 -4.87 9.76 -45.89 -0.45 -5.32 16 15 C 0.49 6.29 7.74 36.01 0.28 6.57 16 16 O -0.51 -7.04 16.01 -18.76 -0.30 -7.34 16 17 C -0.13 -1.27 5.81 -91.77 -0.53 -1.80 16 18 H 0.16 1.54 7.67 -51.93 -0.40 1.14 16 19 C -0.11 -0.73 9.94 -26.73 -0.27 -0.99 16 20 C -0.14 -1.10 5.81 -91.77 -0.53 -1.64 16 21 H 0.15 1.16 7.67 -51.93 -0.40 0.76 16 22 C 0.51 4.32 8.11 36.00 0.29 4.61 16 23 O -0.51 -5.83 17.02 -18.75 -0.32 -6.15 16 24 O -0.51 -2.99 13.42 -39.26 -0.53 -3.52 16 25 H 0.27 7.23 8.31 -40.82 -0.34 6.90 16 26 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.39 6.66 8.32 -40.82 -0.34 6.32 16 29 H 0.10 1.22 8.13 -51.93 -0.42 0.80 16 30 H 0.10 1.25 8.13 -51.93 -0.42 0.83 16 31 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.12 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.41 0.66 9.10 45.56 0.41 1.07 16 LS Contribution 311.34 15.07 4.69 4.69 Total: -1.00 -35.67 311.34 -5.63 -41.30 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -2.79 Total: 2.89 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: -1.08 Total: 10.72 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.40 Total: -39.66 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -1.83 Total: -35.47 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -35.67 -5.63 -41.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739076089.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.814 kcal (2) G-P(sol) polarization free energy of solvation -35.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds