Wall clock time and date at job start Mon Mar 30 2020 00:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99729 * 2 1 4 4 H 1.48502 * 109.46981 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47039 * 299.99265 * 3 2 1 6 6 H 1.48500 * 109.47274 * 59.99718 * 3 2 1 7 7 C 1.37874 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00012 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00392 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47541 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00221 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99766 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.99984 * 180.02562 * 11 10 9 14 14 O 1.45204 * 109.46816 * 180.02562 * 13 11 10 15 15 C 1.34226 * 116.99674 * 180.02562 * 14 13 11 16 16 O 1.20833 * 120.00277 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00015 * 180.02562 * 15 14 13 18 18 H 1.09002 * 115.55088 * 34.41263 * 17 15 14 19 19 C 1.53005 * 117.49691 * 248.74333 * 17 15 14 20 20 C 1.52999 * 59.99973 * 252.48494 * 19 17 15 21 21 H 1.08995 * 117.49529 * 107.48826 * 20 19 17 22 22 C 1.50693 * 117.50064 * 252.51042 * 20 19 17 23 23 O 1.20828 * 120.00278 * 68.62192 * 22 20 19 24 24 O 1.34229 * 120.00404 * 248.62463 * 22 20 19 25 25 H 0.96998 * 120.00508 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46592 * 59.99714 * 9 7 2 27 27 H 1.08997 * 109.47408 * 300.00466 * 9 7 2 28 28 H 0.97000 * 119.99690 * 0.02562 * 10 9 7 29 29 H 1.08997 * 109.46894 * 60.00379 * 13 11 10 30 30 H 1.08997 * 109.46992 * 299.99952 * 13 11 10 31 31 H 1.09004 * 117.49602 * 359.97438 * 19 17 15 32 32 H 1.09004 * 117.49360 * 144.99546 * 19 17 15 33 33 H 0.96697 * 117.00421 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7539 -4.8834 0.0000 12 8 0.5615 -5.1050 -0.0009 13 6 2.7332 -6.0288 0.0006 14 8 2.0072 -7.2863 -0.0007 15 6 2.7383 -8.4120 0.0001 16 8 3.9449 -8.3487 0.0014 17 6 2.0542 -9.7548 -0.0018 18 1 1.1189 -9.8051 -0.5593 19 6 2.1695 -10.6081 1.2629 20 6 2.9423 -11.0006 0.0021 21 1 4.0216 -10.8492 0.0058 22 6 2.4570 -12.2034 -0.7653 23 8 1.4024 -12.1598 -1.3532 24 8 3.1964 -13.3233 -0.7957 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6240 -2.5568 0.8902 28 1 3.1567 -3.4354 0.0009 29 1 3.3591 -5.9712 0.8911 30 1 3.3605 -5.9709 -0.8889 31 1 2.7406 -10.1985 2.0961 32 1 1.3101 -11.2199 1.5373 33 1 2.8437 -14.0687 -1.3006 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739076089.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:12 Heat of formation + Delta-G solvation = -214.727928 kcal Electronic energy + Delta-G solvation = -19462.370070 eV Core-core repulsion = 15874.232848 eV Total energy + Delta-G solvation = -3588.137222 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.11369 -41.31190 -40.40876 -38.32584 -37.34714 -36.76066 -36.19024 -34.42225 -30.97459 -28.80567 -27.19770 -25.49840 -24.47012 -22.31233 -21.66185 -21.17523 -19.70947 -19.18506 -18.85356 -18.01832 -17.82257 -17.67777 -16.99994 -16.93881 -16.66539 -16.21993 -15.98663 -15.11272 -14.82355 -14.49213 -14.30667 -14.00112 -13.71908 -13.48944 -13.35249 -12.91413 -12.75932 -12.66813 -12.22421 -12.07401 -12.03604 -11.95099 -11.84233 -11.59693 -11.46921 -10.92675 -10.83361 -9.93748 -8.29838 -6.46353 0.72693 0.97318 1.11622 1.44807 1.45223 1.54590 1.58892 1.95326 2.34492 2.51745 2.56682 3.05609 3.22303 3.45773 3.59615 3.74284 3.99367 4.04719 4.06569 4.25239 4.56069 4.74341 4.83556 5.06169 5.16688 5.21576 5.41681 5.52452 5.62678 5.81981 6.47541 6.63069 6.77597 6.92158 7.20418 7.35619 8.82526 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.061721 B = 0.002597 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.546814 B =10779.832642 C =11003.466663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.985 3.015 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.555 4.555 8 H 0.087 0.913 9 C 0.265 3.735 10 N -0.698 5.698 11 C 0.498 3.502 12 O -0.585 6.585 13 C 0.060 3.940 14 O -0.343 6.343 15 C 0.499 3.501 16 O -0.519 6.519 17 C -0.153 4.153 18 H 0.147 0.853 19 C -0.086 4.086 20 C -0.133 4.133 21 H 0.160 0.840 22 C 0.520 3.480 23 O -0.544 6.544 24 O -0.501 6.501 25 H 0.269 0.731 26 H -0.008 1.008 27 H -0.007 1.007 28 H 0.413 0.587 29 H 0.130 0.870 30 H 0.126 0.874 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.751 -23.615 1.900 26.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.176 1.176 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.593 4.593 8 H 0.105 0.895 9 C 0.143 3.857 10 N -0.350 5.350 11 C 0.284 3.716 12 O -0.465 6.465 13 C -0.016 4.016 14 O -0.258 6.258 15 C 0.343 3.657 16 O -0.408 6.408 17 C -0.172 4.172 18 H 0.165 0.835 19 C -0.122 4.122 20 C -0.152 4.152 21 H 0.177 0.823 22 C 0.363 3.637 23 O -0.435 6.435 24 O -0.315 6.315 25 H 0.078 0.922 26 H 0.010 0.990 27 H 0.011 0.989 28 H 0.250 0.750 29 H 0.148 0.852 30 H 0.143 0.857 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 9.994 -23.269 1.957 25.400 hybrid contribution 0.016 0.719 -0.654 0.973 sum 10.011 -22.550 1.303 24.706 Atomic orbital electron populations 1.70137 1.08261 1.28567 1.49945 1.26063 0.95781 1.03919 0.93887 0.85097 0.79115 0.77303 0.77611 1.17564 1.20587 1.20513 1.21639 0.94445 0.90334 1.52858 0.89515 1.18639 0.88608 0.83849 0.94606 1.46033 1.11747 1.04688 1.72489 1.20719 0.89309 0.84767 0.76798 1.90697 1.19015 1.85315 1.51485 1.22807 0.92507 0.78827 1.07490 1.86539 1.41263 1.14536 1.83459 1.22714 0.85559 0.85809 0.71589 1.90670 1.15632 1.87955 1.46541 1.21713 1.02327 0.84581 1.08557 0.83501 1.23443 1.02026 0.97161 0.89585 1.21757 1.01688 0.89167 1.02603 0.82272 1.22090 0.80766 0.83747 0.77057 1.90771 1.25030 1.83763 1.43951 1.84445 1.52342 1.24314 1.70428 0.92214 0.99049 0.98893 0.75035 0.85181 0.85673 0.84355 0.84368 0.70351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.47 13.29 21.45 0.28 -55.18 16 2 C 0.00 0.17 5.46 84.65 0.46 0.64 16 3 Si 0.99 41.66 29.54 68.60 2.03 43.68 16 4 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 5 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 6 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.55 -29.46 9.28 25.60 0.24 -29.22 16 8 H 0.09 4.12 7.60 -2.91 -0.02 4.10 16 9 C 0.27 14.24 5.43 85.63 0.46 14.71 16 10 N -0.70 -28.38 5.55 -466.79 -2.59 -30.97 16 11 C 0.50 19.70 7.91 87.66 0.69 20.39 16 12 O -0.58 -29.38 16.50 15.76 0.26 -29.12 16 13 C 0.06 1.66 5.94 71.24 0.42 2.09 16 14 O -0.34 -10.20 9.76 -45.02 -0.44 -10.64 16 15 C 0.50 12.02 7.74 71.24 0.55 12.57 16 16 O -0.52 -13.31 16.01 21.94 0.35 -12.96 16 17 C -0.15 -2.80 5.81 -11.54 -0.07 -2.87 16 18 H 0.15 2.94 7.67 -2.39 -0.02 2.92 16 19 C -0.09 -0.94 9.94 30.60 0.30 -0.64 16 20 C -0.13 -1.87 5.81 -11.54 -0.07 -1.93 16 21 H 0.16 2.05 7.67 -2.39 -0.02 2.03 16 22 C 0.52 7.96 8.11 71.23 0.58 8.53 16 23 O -0.54 -12.13 17.02 21.96 0.37 -11.76 16 24 O -0.50 -4.79 13.42 -51.41 -0.69 -5.48 16 25 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 26 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 27 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 28 H 0.41 13.35 8.32 -92.71 -0.77 12.57 16 29 H 0.13 2.83 8.13 -2.39 -0.02 2.81 16 30 H 0.13 2.84 8.13 -2.39 -0.02 2.82 16 31 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.14 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.43 0.46 9.10 -74.06 -0.67 -0.22 16 Total: -1.00 -79.65 311.34 2.89 -76.76 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -0.27 Total: 11.39 kcal Atomic # 6 Polarization: 20.69 SS G_CDS: 3.58 Total: 24.28 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -2.30 Total: -86.16 kcal Atomic # 8 Polarization: -69.81 SS G_CDS: -0.14 Total: -69.96 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Total: -79.65 2.89 -76.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739076089.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.966 kcal (2) G-P(sol) polarization free energy of solvation -79.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds