Wall clock time and date at job start Mon Mar 30 2020 00:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99871 * 2 1 4 4 H 1.48498 * 109.47357 * 240.00082 * 3 2 1 5 5 H 1.48503 * 109.47213 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47030 * 119.99903 * 3 2 1 7 7 C 1.37881 * 120.00431 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99794 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99594 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47140 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00513 * 180.02562 * 10 9 7 12 12 O 1.21276 * 119.99345 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00213 * 179.97438 * 11 10 9 14 14 O 1.45195 * 109.47095 * 179.97438 * 13 11 10 15 15 C 1.34235 * 117.00139 * 180.02562 * 14 13 11 16 16 O 1.20826 * 119.99581 * 359.97438 * 15 14 13 17 17 C 1.50698 * 119.99687 * 180.02562 * 15 14 13 18 18 H 1.09000 * 115.55052 * 277.19225 * 17 15 14 19 19 C 1.52994 * 117.50488 * 62.87147 * 17 15 14 20 20 C 1.53001 * 60.00356 * 107.48738 * 19 17 15 21 21 H 1.08996 * 117.49861 * 107.49061 * 20 19 17 22 22 C 1.50705 * 117.49814 * 252.51239 * 20 19 17 23 23 O 1.20818 * 119.99907 * 338.44075 * 22 20 19 24 24 O 1.34231 * 119.99742 * 158.43374 * 22 20 19 25 25 H 0.96995 * 120.00282 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47434 * 299.99595 * 9 7 2 27 27 H 1.08998 * 109.47641 * 60.00200 * 9 7 2 28 28 H 0.97006 * 119.99864 * 359.97438 * 10 9 7 29 29 H 1.09001 * 109.47127 * 299.99489 * 13 11 10 30 30 H 1.08995 * 109.47329 * 59.99775 * 13 11 10 31 31 H 1.08999 * 117.50284 * 214.97415 * 19 17 15 32 32 H 1.08998 * 117.49742 * 359.97034 * 19 17 15 33 33 H 0.96704 * 116.99694 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0015 11 6 1.7540 -4.8834 -0.0029 12 8 0.5617 -5.1049 -0.0039 13 6 2.7334 -6.0287 -0.0032 14 8 2.0074 -7.2862 -0.0042 15 6 2.7386 -8.4119 -0.0041 16 8 3.9452 -8.3486 -0.0037 17 6 2.0544 -9.7547 -0.0057 18 1 1.7301 -10.1182 0.9694 19 6 1.1836 -10.1025 -1.2146 20 6 2.5360 -10.7918 -1.0224 21 1 2.5287 -11.8378 -0.7162 22 6 3.6581 -10.3922 -1.9456 23 8 3.4102 -9.8789 -3.0108 24 8 4.9330 -10.6066 -1.5843 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5575 0.8880 27 1 0.6249 -2.5563 -0.8919 28 1 3.1569 -3.4353 -0.0010 29 1 3.3606 -5.9702 -0.8928 30 1 3.3594 -5.9717 0.8872 31 1 0.2866 -10.6952 -1.0350 32 1 1.1051 -9.3600 -2.0087 33 1 5.6183 -10.3339 -2.2098 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739076090.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:14 Heat of formation + Delta-G solvation = -184.899741 kcal Electronic energy + Delta-G solvation = -20013.858620 eV Core-core repulsion = 16427.014845 eV Total energy + Delta-G solvation = -3586.843775 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.24585 -40.19931 -38.78802 -37.27164 -36.42313 -36.06494 -34.27226 -32.42903 -29.44144 -27.06124 -26.06505 -24.77865 -22.60871 -21.40263 -20.50981 -19.96853 -18.65873 -17.89291 -17.56210 -17.14885 -16.83885 -16.10377 -15.76490 -15.34682 -15.12505 -14.97429 -14.39428 -14.26797 -13.57902 -13.00643 -12.97371 -12.62328 -12.39098 -12.00688 -11.81532 -11.79943 -11.37831 -11.33156 -11.04600 -10.92587 -10.90262 -10.77175 -10.63419 -10.35819 -9.47160 -9.21511 -8.79315 -8.01174 -6.20608 -4.28306 1.71201 1.90333 2.17881 2.65233 3.08367 3.14165 3.23660 3.28550 3.29966 3.85631 4.04732 4.09880 4.30723 4.46578 4.74098 4.87250 5.07511 5.14955 5.17310 5.20451 5.29329 5.30641 5.55486 6.18836 6.22941 7.20207 7.27620 7.44102 7.48397 7.60184 7.61403 7.90564 8.47253 8.68952 8.93559 9.38064 10.89495 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.038973 B = 0.003125 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.267580 B = 8958.507689 C = 9258.650669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.706 5.706 11 C 0.500 3.500 12 O -0.533 6.533 13 C 0.048 3.952 14 O -0.319 6.319 15 C 0.483 3.517 16 O -0.497 6.497 17 C -0.132 4.132 18 H 0.162 0.838 19 C -0.118 4.118 20 C -0.138 4.138 21 H 0.155 0.845 22 C 0.509 3.491 23 O -0.510 6.510 24 O -0.499 6.499 25 H 0.267 0.733 26 H 0.030 0.970 27 H 0.030 0.970 28 H 0.393 0.607 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.129 0.871 32 H 0.119 0.881 33 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.132 -21.826 -0.432 22.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.356 5.356 11 C 0.283 3.717 12 O -0.410 6.410 13 C -0.030 4.030 14 O -0.233 6.233 15 C 0.325 3.675 16 O -0.384 6.384 17 C -0.151 4.151 18 H 0.179 0.821 19 C -0.155 4.155 20 C -0.157 4.157 21 H 0.173 0.827 22 C 0.350 3.650 23 O -0.398 6.398 24 O -0.310 6.310 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.226 0.774 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.147 0.853 32 H 0.138 0.862 33 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 6.070 -21.737 -0.450 22.573 hybrid contribution 1.602 1.232 -0.299 2.043 sum 7.673 -20.505 -0.749 21.906 Atomic orbital electron populations 1.69959 1.06125 1.27560 1.48547 1.24951 0.94937 0.99489 0.94569 0.86442 0.79396 0.82153 0.78733 1.20018 1.21026 1.20027 1.21170 0.93302 0.90310 1.53711 0.91811 1.19181 0.88147 0.81482 0.98061 1.46369 1.11541 1.05317 1.72384 1.19839 0.89081 0.83956 0.78847 1.90711 1.16251 1.84518 1.49530 1.22928 0.94509 0.80871 1.04656 1.86563 1.40136 1.13808 1.82822 1.22581 0.86067 0.86094 0.72769 1.90720 1.15074 1.87734 1.44905 1.21801 1.04367 0.89672 0.99268 0.82089 1.23317 0.92588 1.01894 0.97705 1.21900 0.93870 1.00205 0.99754 0.82701 1.22114 0.83306 0.74501 0.85041 1.90758 1.84822 1.40111 1.24091 1.84495 1.16620 1.77539 1.52376 0.92286 0.95212 0.95217 0.77424 0.88509 0.88327 0.85295 0.86234 0.72904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.83 13.29 55.43 0.74 -25.09 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.91 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.55 -14.65 9.28 -34.44 -0.32 -14.97 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.57 5.43 -5.20 -0.03 6.55 16 10 N -0.71 -14.62 5.55 -61.48 -0.34 -14.96 16 11 C 0.50 10.04 7.91 -10.99 -0.09 9.96 16 12 O -0.53 -12.99 16.50 -14.10 -0.23 -13.22 16 13 C 0.05 0.73 5.94 36.00 0.21 0.95 16 14 O -0.32 -5.01 9.75 -45.92 -0.45 -5.46 16 15 C 0.48 6.45 7.01 36.00 0.25 6.70 16 16 O -0.50 -7.43 15.39 -20.34 -0.31 -7.74 16 17 C -0.13 -1.17 6.24 -91.77 -0.57 -1.74 16 18 H 0.16 0.89 8.14 -51.93 -0.42 0.47 16 19 C -0.12 -0.92 9.74 -26.73 -0.26 -1.18 16 20 C -0.14 -1.08 6.29 -91.77 -0.58 -1.66 16 21 H 0.16 0.65 8.14 -51.93 -0.42 0.23 16 22 C 0.51 5.59 6.28 36.01 0.23 5.82 16 23 O -0.51 -7.23 17.24 -18.74 -0.32 -7.55 16 24 O -0.50 -4.65 13.15 -40.85 -0.54 -5.19 16 25 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.39 6.84 8.32 -40.82 -0.34 6.50 16 29 H 0.10 1.34 8.13 -51.93 -0.42 0.91 16 30 H 0.10 1.29 8.13 -51.93 -0.42 0.87 16 31 H 0.13 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.12 1.22 7.84 -51.93 -0.41 0.81 16 33 H 0.41 2.29 9.10 45.56 0.41 2.70 16 LS Contribution 309.46 15.07 4.66 4.66 Total: -1.00 -36.77 309.46 -5.89 -42.66 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -2.82 Total: 4.15 kcal Atomic # 6 Polarization: 13.35 SS G_CDS: -1.25 Total: 12.10 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.40 Total: -40.05 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -1.85 Total: -39.17 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -36.77 -5.89 -42.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739076090.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.235 kcal (2) G-P(sol) polarization free energy of solvation -36.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds