Wall clock time and date at job start Mon Mar 30 2020 00:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99871 * 2 1 4 4 H 1.48498 * 109.47357 * 240.00082 * 3 2 1 5 5 H 1.48503 * 109.47213 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47030 * 119.99903 * 3 2 1 7 7 C 1.37881 * 120.00431 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99794 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99594 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47140 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00513 * 180.02562 * 10 9 7 12 12 O 1.21276 * 119.99345 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00213 * 179.97438 * 11 10 9 14 14 O 1.45195 * 109.47095 * 179.97438 * 13 11 10 15 15 C 1.34235 * 117.00139 * 180.02562 * 14 13 11 16 16 O 1.20826 * 119.99581 * 359.97438 * 15 14 13 17 17 C 1.50698 * 119.99687 * 180.02562 * 15 14 13 18 18 H 1.09000 * 115.55052 * 277.19225 * 17 15 14 19 19 C 1.52994 * 117.50488 * 62.87147 * 17 15 14 20 20 C 1.53001 * 60.00356 * 107.48738 * 19 17 15 21 21 H 1.08996 * 117.49861 * 107.49061 * 20 19 17 22 22 C 1.50705 * 117.49814 * 252.51239 * 20 19 17 23 23 O 1.20818 * 119.99907 * 338.44075 * 22 20 19 24 24 O 1.34231 * 119.99742 * 158.43374 * 22 20 19 25 25 H 0.96995 * 120.00282 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47434 * 299.99595 * 9 7 2 27 27 H 1.08998 * 109.47641 * 60.00200 * 9 7 2 28 28 H 0.97006 * 119.99864 * 359.97438 * 10 9 7 29 29 H 1.09001 * 109.47127 * 299.99489 * 13 11 10 30 30 H 1.08995 * 109.47329 * 59.99775 * 13 11 10 31 31 H 1.08999 * 117.50284 * 214.97415 * 19 17 15 32 32 H 1.08998 * 117.49742 * 359.97034 * 19 17 15 33 33 H 0.96704 * 116.99694 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0015 11 6 1.7540 -4.8834 -0.0029 12 8 0.5617 -5.1049 -0.0039 13 6 2.7334 -6.0287 -0.0032 14 8 2.0074 -7.2862 -0.0042 15 6 2.7386 -8.4119 -0.0041 16 8 3.9452 -8.3486 -0.0037 17 6 2.0544 -9.7547 -0.0057 18 1 1.7301 -10.1182 0.9694 19 6 1.1836 -10.1025 -1.2146 20 6 2.5360 -10.7918 -1.0224 21 1 2.5287 -11.8378 -0.7162 22 6 3.6581 -10.3922 -1.9456 23 8 3.4102 -9.8789 -3.0108 24 8 4.9330 -10.6066 -1.5843 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5575 0.8880 27 1 0.6249 -2.5563 -0.8919 28 1 3.1569 -3.4353 -0.0010 29 1 3.3606 -5.9702 -0.8928 30 1 3.3594 -5.9717 0.8872 31 1 0.2866 -10.6952 -1.0350 32 1 1.1051 -9.3600 -2.0087 33 1 5.6183 -10.3339 -2.2098 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739076090.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:14 Heat of formation + Delta-G solvation = -212.774477 kcal Electronic energy + Delta-G solvation = -20015.067359 eV Core-core repulsion = 16427.014845 eV Total energy + Delta-G solvation = -3588.052514 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.19018 -41.21507 -40.38734 -38.11192 -37.47043 -36.93005 -36.21194 -34.43958 -30.98138 -28.77304 -26.99688 -25.67778 -24.52066 -22.22248 -21.69304 -21.35229 -19.56762 -19.15594 -18.79854 -18.26213 -18.01799 -17.51255 -17.02305 -16.98631 -16.48064 -16.18222 -15.76744 -15.53092 -14.78065 -14.44483 -14.35544 -14.03737 -13.70567 -13.67809 -13.13447 -12.97340 -12.69346 -12.62765 -12.25360 -12.07644 -12.05560 -11.99925 -11.70024 -11.54615 -11.51607 -10.95705 -10.82081 -9.96239 -8.30697 -6.47677 0.82472 0.95126 1.18002 1.43800 1.47049 1.50604 1.55637 1.96155 2.31985 2.44234 2.52969 3.04398 3.40361 3.45290 3.51387 3.68501 3.95196 3.97001 4.14552 4.30583 4.65573 4.81850 4.94837 5.03979 5.14463 5.19879 5.38925 5.52555 5.60348 5.80310 6.42114 6.60539 6.74155 6.89121 7.17877 7.32320 8.81250 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.038973 B = 0.003125 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.267580 B = 8958.507689 C = 9258.650669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.985 3.015 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.560 4.560 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.698 5.698 11 C 0.500 3.500 12 O -0.581 6.581 13 C 0.059 3.941 14 O -0.340 6.340 15 C 0.477 3.523 16 O -0.517 6.517 17 C -0.138 4.138 18 H 0.201 0.799 19 C -0.118 4.118 20 C -0.131 4.131 21 H 0.200 0.800 22 C 0.501 3.499 23 O -0.553 6.553 24 O -0.499 6.499 25 H 0.270 0.730 26 H -0.006 1.006 27 H -0.008 1.008 28 H 0.412 0.588 29 H 0.116 0.884 30 H 0.128 0.872 31 H 0.168 0.832 32 H 0.088 0.912 33 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.862 -22.930 0.289 24.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.597 4.597 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.350 5.350 11 C 0.285 3.715 12 O -0.461 6.461 13 C -0.017 4.017 14 O -0.255 6.255 15 C 0.320 3.680 16 O -0.405 6.405 17 C -0.156 4.156 18 H 0.218 0.782 19 C -0.154 4.154 20 C -0.149 4.149 21 H 0.217 0.783 22 C 0.345 3.655 23 O -0.444 6.444 24 O -0.311 6.311 25 H 0.079 0.921 26 H 0.012 0.988 27 H 0.010 0.990 28 H 0.248 0.752 29 H 0.134 0.866 30 H 0.145 0.855 31 H 0.186 0.814 32 H 0.106 0.894 33 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 7.874 -22.877 0.278 24.196 hybrid contribution 1.084 1.501 -0.544 1.929 sum 8.958 -21.377 -0.267 23.179 Atomic orbital electron populations 1.70120 1.08241 1.28751 1.49688 1.26053 0.95781 1.03868 0.93761 0.85197 0.77901 0.76575 0.79489 1.18753 1.21086 1.18609 1.21580 0.94416 0.90425 1.53308 0.89640 1.18638 0.88554 0.83726 0.94658 1.46052 1.11742 1.04725 1.72475 1.20627 0.89271 0.84677 0.76879 1.90684 1.18774 1.85272 1.51389 1.22746 0.92708 0.79399 1.06894 1.86570 1.41214 1.14421 1.83332 1.23518 0.86146 0.86647 0.71647 1.90701 1.15966 1.87966 1.45893 1.22110 1.04759 0.87201 1.01527 0.78202 1.23447 0.94246 1.01603 0.96117 1.22223 0.92410 1.02007 0.98291 0.78297 1.22845 0.84246 0.73430 0.84946 1.90743 1.85429 1.42143 1.26130 1.84482 1.16685 1.77144 1.52796 0.92141 0.98773 0.98999 0.75165 0.86623 0.85455 0.81446 0.89380 0.71409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.62 13.29 21.45 0.28 -55.34 16 2 C 0.01 0.29 5.46 84.66 0.46 0.75 16 3 Si 0.99 41.92 29.54 68.60 2.03 43.95 16 4 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 5 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 7 C -0.56 -30.08 9.28 25.60 0.24 -29.84 16 8 H 0.09 4.12 7.60 -2.91 -0.02 4.10 16 9 C 0.27 14.47 5.43 85.63 0.46 14.94 16 10 N -0.70 -29.19 5.55 -466.80 -2.59 -31.78 16 11 C 0.50 20.33 7.91 87.66 0.69 21.02 16 12 O -0.58 -29.37 16.50 15.78 0.26 -29.11 16 13 C 0.06 1.76 5.94 71.23 0.42 2.19 16 14 O -0.34 -10.45 9.75 -45.11 -0.44 -10.89 16 15 C 0.48 12.03 7.01 71.24 0.50 12.53 16 16 O -0.52 -14.66 15.39 23.48 0.36 -14.30 16 17 C -0.14 -2.05 6.24 -11.54 -0.07 -2.12 16 18 H 0.20 1.36 8.14 -2.39 -0.02 1.34 16 19 C -0.12 -1.57 9.74 30.59 0.30 -1.27 16 20 C -0.13 -1.67 6.29 -11.54 -0.07 -1.75 16 21 H 0.20 0.72 8.14 -2.39 -0.02 0.70 16 22 C 0.50 10.39 6.28 71.24 0.45 10.84 16 23 O -0.55 -15.74 17.24 21.99 0.38 -15.36 16 24 O -0.50 -8.56 13.15 -49.91 -0.66 -9.21 16 25 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 26 H -0.01 -0.35 8.14 -2.39 -0.02 -0.36 16 27 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 28 H 0.41 13.92 8.32 -92.70 -0.77 13.15 16 29 H 0.12 3.02 8.13 -2.39 -0.02 3.00 16 30 H 0.13 3.07 8.13 -2.39 -0.02 3.05 16 31 H 0.17 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.09 1.79 7.84 -2.39 -0.02 1.77 16 33 H 0.42 4.35 9.10 -74.05 -0.67 3.67 16 Total: -1.00 -83.49 309.46 2.73 -80.76 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -0.27 Total: 13.99 kcal Atomic # 6 Polarization: 23.91 SS G_CDS: 3.38 Total: 27.29 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -2.30 Total: -87.12 kcal Atomic # 8 Polarization: -78.78 SS G_CDS: -0.10 Total: -78.87 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -83.49 2.73 -80.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739076090.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.016 kcal (2) G-P(sol) polarization free energy of solvation -83.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds