Wall clock time and date at job start Mon Mar 30 2020 01:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30437 * 125.98682 * 2 1 4 4 N 1.39931 * 108.91596 * 179.77770 * 3 2 1 5 5 C 1.46503 * 125.75769 * 180.27507 * 4 3 2 6 6 C 1.53009 * 109.46829 * 270.17991 * 5 4 3 7 7 Cl 1.80298 * 109.46679 * 179.97438 * 6 5 4 8 8 C 1.34286 * 108.49690 * 0.42502 * 4 3 2 9 9 C 1.50703 * 126.30074 * 179.84755 * 8 4 3 10 10 C 1.38107 * 107.40329 * 359.58318 * 8 4 3 11 11 C 1.47358 * 126.42438 * 180.30100 * 10 8 4 12 12 O 1.21624 * 120.00017 * 90.00292 * 11 10 8 13 13 N 1.34782 * 119.99785 * 270.00007 * 11 10 8 14 14 C 1.36973 * 119.99847 * 180.02562 * 13 11 10 15 15 H 1.07997 * 120.00393 * 359.97438 * 14 13 11 16 16 C 1.38974 * 119.99899 * 180.02562 * 14 13 11 17 17 N 1.31415 * 120.00074 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00001 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47350 * 59.99741 * 18 16 14 20 20 H 1.48506 * 109.46904 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47115 * 299.99548 * 18 16 14 22 22 H 1.08996 * 109.47403 * 269.96423 * 1 2 3 23 23 H 1.09001 * 109.46976 * 29.96462 * 1 2 3 24 24 H 1.08997 * 109.47058 * 149.96107 * 1 2 3 25 25 H 1.09001 * 109.46867 * 30.17068 * 5 4 3 26 26 H 1.08998 * 109.47620 * 150.17880 * 5 4 3 27 27 H 1.09001 * 109.46642 * 299.99215 * 6 5 4 28 28 H 1.08998 * 109.47110 * 59.99577 * 6 5 4 29 29 H 1.09002 * 109.47152 * 269.68764 * 9 8 4 30 30 H 1.09001 * 109.46980 * 149.68865 * 9 8 4 31 31 H 1.09004 * 109.47113 * 29.68846 * 9 8 4 32 32 H 0.96999 * 119.99623 * 359.97438 * 13 11 10 33 33 H 0.97005 * 119.99766 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2734 1.0554 0.0000 4 7 3.6111 0.6447 0.0051 5 6 4.7784 1.5298 0.0125 6 6 5.1886 1.8449 -1.4275 7 17 6.6248 2.9349 -1.4184 8 6 3.6445 -0.6978 -0.0011 9 6 4.8809 -1.5594 -0.0019 10 6 2.3374 -1.1435 -0.0007 11 6 1.8920 -2.5482 -0.0001 12 8 1.7084 -3.1275 1.0535 13 7 1.6880 -3.1909 -1.1671 14 6 1.2735 -4.4964 -1.1665 15 1 1.1105 -5.0109 -0.2311 16 6 1.0636 -5.1594 -2.3698 17 7 1.2624 -4.5335 -3.5082 18 14 0.4990 -6.9400 -2.3691 19 1 -0.8064 -7.0451 -1.6692 20 1 0.3491 -7.4123 -3.7691 21 1 1.5051 -7.7781 -1.6686 22 1 -0.3634 -0.0006 1.0276 23 1 -0.3633 0.8903 -0.5133 24 1 -0.3633 -0.8896 -0.5144 25 1 4.5287 2.4561 0.5300 26 1 5.6043 1.0378 0.5261 27 1 5.4383 0.9186 -1.9450 28 1 4.3627 2.3369 -1.9412 29 1 5.1785 -1.7669 -1.0298 30 1 4.6703 -2.4975 0.5117 31 1 5.6881 -1.0371 0.5117 32 1 1.8340 -2.7287 -2.0072 33 1 1.1156 -4.9962 -4.3480 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000740742591.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:47 Heat of formation + Delta-G solvation = -6.608841 kcal Electronic energy + Delta-G solvation = -18466.235166 eV Core-core repulsion = 15360.124581 eV Total energy + Delta-G solvation = -3106.110585 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.44908 -39.69528 -37.34219 -35.95548 -35.66430 -33.46724 -33.04147 -31.59670 -28.97309 -28.14418 -26.82468 -24.47241 -22.77341 -20.63677 -20.36111 -19.86587 -18.16828 -17.39634 -16.60645 -16.52703 -15.94826 -15.80030 -15.33537 -14.94034 -14.66676 -14.48639 -14.23776 -14.14555 -13.79114 -13.52175 -13.35853 -13.16590 -13.02384 -12.89642 -12.72832 -12.41515 -12.11614 -11.78491 -11.73482 -11.49612 -11.44287 -10.52024 -10.16129 -10.02373 -9.45907 -8.45557 -5.94850 0.57031 0.87208 1.41120 1.43612 1.47801 1.56384 1.68721 1.98559 2.33121 3.17987 3.25116 3.48206 3.52488 3.60289 3.82196 3.96435 4.12361 4.33990 4.42835 4.54233 4.55422 4.63523 4.70256 4.86303 4.91882 4.97018 5.06936 5.41888 5.52920 5.92421 6.01761 6.58451 6.59279 7.11208 7.55264 8.10756 8.71364 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.023907 B = 0.004501 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.930575 B = 6220.018140 C = 6715.416913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.099 3.901 3 N -0.310 5.310 4 N -0.359 5.359 5 C 0.120 3.880 6 C -0.043 4.043 7 Cl -0.165 7.165 8 C 0.125 3.875 9 C -0.094 4.094 10 C -0.289 4.289 11 C 0.523 3.477 12 O -0.636 6.636 13 N -0.552 5.552 14 C -0.337 4.337 15 H 0.082 0.918 16 C -0.007 4.007 17 N -0.917 5.917 18 Si 0.993 3.007 19 H -0.271 1.271 20 H -0.271 1.271 21 H -0.269 1.269 22 H 0.086 0.914 23 H 0.097 0.903 24 H 0.062 0.938 25 H 0.117 0.883 26 H 0.129 0.871 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.394 0.606 33 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.006 12.669 1.357 15.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.067 4.067 3 N -0.132 5.132 4 N -0.140 5.140 5 C 0.000 4.000 6 C -0.107 4.107 7 Cl -0.138 7.138 8 C -0.005 4.005 9 C -0.152 4.152 10 C -0.303 4.303 11 C 0.310 3.690 12 O -0.524 6.524 13 N -0.186 5.186 14 C -0.466 4.466 15 H 0.100 0.900 16 C -0.207 4.207 17 N -0.557 5.557 18 Si 0.816 3.184 19 H -0.196 1.196 20 H -0.195 1.195 21 H -0.194 1.194 22 H 0.104 0.896 23 H 0.115 0.885 24 H 0.081 0.919 25 H 0.135 0.865 26 H 0.147 0.853 27 H 0.125 0.875 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.087 0.913 31 H 0.130 0.870 32 H 0.227 0.773 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.128 13.678 1.826 16.546 hybrid contribution -0.365 -1.488 -0.504 1.613 sum 8.764 12.191 1.322 15.072 Atomic orbital electron populations 1.20236 0.85377 1.03658 1.03735 1.22629 0.97812 0.89012 0.97260 1.76946 0.86690 1.21974 1.27569 1.48284 1.05457 1.03559 1.56738 1.22264 0.84619 0.95797 0.97293 1.24657 0.90159 0.97430 0.98417 1.98736 1.46806 1.69286 1.99002 1.21702 0.96409 0.85067 0.97349 1.20641 0.91717 0.97945 1.04880 1.20105 0.93612 0.93889 1.22744 1.17327 0.82770 0.85440 0.83482 1.90555 1.59326 1.69619 1.32926 1.41884 1.58046 1.11695 1.06945 1.19688 1.44137 0.88492 0.94297 0.89964 1.26054 0.96679 1.04155 0.93826 1.69687 1.48556 1.39410 0.98051 0.84990 0.78881 0.76848 0.77644 1.19638 1.19529 1.19439 0.89593 0.88458 0.91869 0.86507 0.85265 0.87511 0.88283 0.88299 0.91336 0.86995 0.77253 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.32 10.28 71.23 0.73 -1.58 16 2 C 0.10 3.69 7.26 43.52 0.32 4.01 16 3 N -0.31 -10.23 12.50 -46.66 -0.58 -10.82 16 4 N -0.36 -9.91 3.58 -332.90 -1.19 -11.10 16 5 C 0.12 2.06 6.34 86.38 0.55 2.61 16 6 C -0.04 -0.66 6.98 71.99 0.50 -0.16 16 7 Cl -0.16 -2.57 29.15 -2.72 -0.08 -2.64 16 8 C 0.13 4.06 7.01 42.15 0.30 4.35 16 9 C -0.09 -2.38 9.93 71.24 0.71 -1.68 16 10 C -0.29 -11.94 5.88 -20.15 -0.12 -12.06 16 11 C 0.52 26.60 6.93 86.64 0.60 27.20 16 12 O -0.64 -37.32 16.68 -4.11 -0.07 -37.39 16 13 N -0.55 -29.14 5.28 -310.03 -1.64 -30.78 16 14 C -0.34 -19.07 9.68 84.07 0.81 -18.26 16 15 H 0.08 4.93 7.15 -2.91 -0.02 4.91 16 16 C -0.01 -0.35 5.50 84.93 0.47 0.11 16 17 N -0.92 -49.08 13.05 21.67 0.28 -48.79 16 18 Si 0.99 42.15 29.55 68.60 2.03 44.18 16 19 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 22 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 23 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 24 H 0.06 2.28 8.01 -2.39 -0.02 2.26 16 25 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.13 1.57 7.01 -2.39 -0.02 1.55 16 27 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.07 2.14 7.96 -2.39 -0.02 2.12 16 31 H 0.11 1.85 7.04 -2.38 -0.02 1.84 16 32 H 0.39 20.33 7.88 -92.71 -0.73 19.60 16 33 H 0.28 13.95 8.31 -92.70 -0.77 13.18 16 Total: -1.00 -70.29 309.11 4.03 -66.26 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.41 Total: 26.53 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 4.86 Total: 4.56 kcal Atomic # 7 Polarization: -98.36 SS G_CDS: -3.13 Total: -101.49 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -0.07 Total: -37.39 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Atomic # 17 Polarization: -2.57 SS G_CDS: -0.08 Total: -2.64 kcal Total: -70.29 4.03 -66.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740742591.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.655 kcal (2) G-P(sol) polarization free energy of solvation -70.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds