Wall clock time and date at job start Mon Mar 30 2020 00:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46503 * 119.99855 * 2 1 4 4 C 1.50701 * 109.46730 * 269.99970 * 3 2 1 5 5 H 1.07998 * 120.00156 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99733 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99841 * 179.97438 * 6 4 3 8 8 Si 1.86803 * 119.99874 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.47030 * 90.00224 * 8 6 4 10 10 H 1.48500 * 109.46843 * 210.00058 * 8 6 4 11 11 H 1.48498 * 109.47166 * 330.00308 * 8 6 4 12 12 C 1.34772 * 119.99752 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99760 * 180.02562 * 12 2 1 14 14 C 1.50699 * 120.00254 * 359.97438 * 12 2 1 15 15 C 1.53000 * 109.47188 * 180.02562 * 14 12 2 16 16 H 1.09002 * 110.54474 * 52.15007 * 15 14 12 17 17 S 1.82369 * 110.74375 * 289.20073 * 15 14 12 18 18 C 1.77245 * 94.49153 * 241.42361 * 17 15 14 19 19 N 1.30280 * 126.28172 * 180.02562 * 18 17 15 20 20 N 1.37066 * 107.44439 * 359.97438 * 18 17 15 21 21 C 1.32214 * 120.27892 * 359.97438 * 20 18 17 22 22 O 1.21256 * 122.87304 * 180.02562 * 21 20 18 23 23 H 1.09009 * 109.46792 * 270.00266 * 1 2 3 24 24 H 1.09000 * 109.47015 * 30.00082 * 1 2 3 25 25 H 1.08996 * 109.46891 * 150.00283 * 1 2 3 26 26 H 1.09003 * 109.47116 * 29.99838 * 3 2 1 27 27 H 1.09002 * 109.46852 * 150.00310 * 3 2 1 28 28 H 0.96999 * 119.99741 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.47046 * 60.00229 * 14 12 2 30 30 H 1.09000 * 109.47075 * 300.00076 * 14 12 2 31 31 H 0.96996 * 120.00189 * 179.97438 * 19 18 17 32 32 H 0.96998 * 119.86107 * 180.28147 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1269 2.8775 -1.6728 7 7 3.3465 3.2568 -2.9128 8 14 3.7338 3.9287 -0.2530 9 1 5.1069 3.5069 0.1236 10 1 3.7497 5.3554 -0.6649 11 1 2.8273 3.7596 0.9110 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0005 16 1 3.1042 -3.5190 0.8054 17 16 3.2257 -3.7617 -1.6111 18 6 2.6150 -5.3884 -1.9613 19 7 2.8669 -6.0934 -3.0275 20 7 1.8300 -5.7690 -0.9042 21 6 1.6555 -4.9556 0.1234 22 8 0.9721 -5.2441 1.0826 23 1 -0.3633 0.0000 1.0278 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6084 2.0284 0.5138 27 1 3.1500 1.1384 0.5138 28 1 3.8233 4.0827 -3.0900 29 1 0.7584 -2.5298 -0.8903 30 1 0.7591 -2.5302 0.8897 31 1 2.4828 -6.9787 -3.1255 32 1 1.4043 -6.6406 -0.9079 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742577316.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:07 Heat of formation + Delta-G solvation = -32.368775 kcal Electronic energy + Delta-G solvation = -18445.171834 eV Core-core repulsion = 15339.987921 eV Total energy + Delta-G solvation = -3105.183914 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.13776 -39.23724 -37.32300 -35.13900 -33.76175 -32.75596 -32.27933 -28.78655 -26.56721 -25.58425 -24.11217 -22.43678 -21.08028 -18.84735 -18.43487 -18.20253 -17.01220 -16.72507 -16.24106 -16.04473 -15.36878 -15.25820 -14.62041 -14.18917 -13.68629 -13.16810 -13.06150 -12.68888 -12.45979 -12.39171 -12.09018 -11.95123 -11.50843 -11.33674 -10.93563 -10.83162 -10.55002 -10.18364 -10.03388 -9.92955 -9.58077 -9.22465 -8.60448 -8.15208 -7.81978 -6.09935 -4.09406 0.83466 1.09315 1.54489 2.28426 2.52885 3.14249 3.28076 3.33794 3.35837 3.48072 3.80621 4.36102 4.38147 4.80194 4.87478 4.99191 5.23798 5.32011 5.40888 5.58788 5.69568 5.78092 6.10018 6.23544 6.61856 6.87693 7.07079 7.20755 7.57286 7.57425 8.08856 8.43011 8.76119 8.93981 9.49569 11.03297 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.028194 B = 0.004986 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.865743 B = 5614.164747 C = 6140.151513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.592 5.592 3 C 0.215 3.785 4 C -0.531 4.531 5 H 0.076 0.924 6 C 0.074 3.926 7 N -0.895 5.895 8 Si 0.875 3.125 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.509 3.491 13 O -0.534 6.534 14 C -0.120 4.120 15 C -0.106 4.106 16 H 0.162 0.838 17 S 0.055 5.945 18 C 0.369 3.631 19 N -0.664 5.664 20 N -0.693 5.693 21 C 0.536 3.464 22 O -0.488 6.488 23 H 0.049 0.951 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.031 0.969 27 H 0.038 0.962 28 H 0.265 0.735 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.344 0.656 32 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.497 -15.665 6.051 18.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.323 5.323 3 C 0.095 3.905 4 C -0.569 4.569 5 H 0.094 0.906 6 C -0.129 4.129 7 N -0.534 5.534 8 Si 0.702 3.298 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.295 3.705 13 O -0.411 6.411 14 C -0.162 4.162 15 C -0.239 4.239 16 H 0.179 0.821 17 S 0.280 5.720 18 C -0.021 4.021 19 N -0.298 5.298 20 N -0.347 5.347 21 C 0.319 3.681 22 O -0.359 6.359 23 H 0.067 0.933 24 H 0.098 0.902 25 H 0.079 0.921 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.125 0.875 30 H 0.133 0.867 31 H 0.164 0.836 32 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -4.799 -14.520 5.059 16.107 hybrid contribution -1.301 -1.260 1.624 2.433 sum -6.100 -15.779 6.683 18.189 Atomic orbital electron populations 1.21738 0.80680 1.03283 1.00751 1.47778 1.06429 1.06971 1.71090 1.19719 0.92475 0.79727 0.98579 1.21304 1.37201 1.07261 0.91148 0.90603 1.24850 0.95197 0.97330 0.95527 1.69895 1.41282 1.23535 1.18645 0.86866 0.80150 0.79833 0.82910 1.19865 1.21076 1.19110 1.19909 0.88025 0.84785 0.77793 1.90703 1.13415 1.86885 1.50130 1.21702 0.97479 0.90950 1.06112 1.24069 1.01899 0.95535 1.02354 0.82106 1.88335 1.59500 1.05518 1.18650 1.25278 0.90116 1.00862 0.85820 1.70093 1.29469 1.13339 1.16938 1.44592 1.48929 1.21344 1.19878 1.19712 0.80668 0.85773 0.81928 1.90839 1.37618 1.76766 1.30709 0.93293 0.90223 0.92081 0.95080 0.94378 0.92518 0.87547 0.86741 0.83602 0.75203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 10.24 59.85 0.61 1.71 16 2 N -0.59 -11.24 2.86 -182.94 -0.52 -11.77 16 3 C 0.22 5.02 4.23 -5.19 -0.02 4.99 16 4 C -0.53 -14.76 9.94 -34.44 -0.34 -15.11 16 5 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.90 -27.19 13.96 55.43 0.77 -26.41 16 8 Si 0.88 21.08 27.47 -169.99 -4.67 16.41 16 9 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 12 C 0.51 9.23 7.48 -10.99 -0.08 9.15 16 13 O -0.53 -11.63 14.78 5.56 0.08 -11.55 16 14 C -0.12 -1.53 3.78 -27.88 -0.11 -1.63 16 15 C -0.11 -1.29 2.82 -27.69 -0.08 -1.37 16 16 H 0.16 1.93 7.89 -51.93 -0.41 1.52 16 17 S 0.05 0.76 21.88 -107.50 -2.35 -1.59 16 18 C 0.37 4.19 8.92 -88.68 -0.79 3.40 16 19 N -0.66 -7.62 14.13 30.84 0.44 -7.18 16 20 N -0.69 -6.51 5.22 -12.31 -0.06 -6.57 16 21 C 0.54 5.98 7.52 -11.92 -0.09 5.89 16 22 O -0.49 -6.45 18.01 5.58 0.10 -6.35 16 23 H 0.05 0.56 8.14 -51.92 -0.42 0.13 16 24 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 25 H 0.06 0.68 6.44 -51.93 -0.33 0.35 16 26 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 27 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.11 1.20 7.40 -51.93 -0.38 0.82 16 30 H 0.11 1.20 8.11 -51.93 -0.42 0.78 16 31 H 0.34 2.94 8.92 -40.82 -0.36 2.57 16 32 H 0.41 2.81 8.91 -40.82 -0.36 2.45 16 LS Contribution 293.71 15.07 4.43 4.43 Total: -1.00 -34.20 293.71 -6.22 -40.42 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -3.43 Total: 1.13 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: -1.00 Total: 9.03 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.62 Total: -51.94 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: 0.18 Total: -17.89 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.35 Total: -1.59 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -34.20 -6.22 -40.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742577316.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.050 kcal (2) G-P(sol) polarization free energy of solvation -34.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds