Wall clock time and date at job start Mon Mar 30 2020 00:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46503 * 119.99855 * 2 1 4 4 C 1.50701 * 109.46730 * 269.99970 * 3 2 1 5 5 H 1.07998 * 120.00156 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99733 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99841 * 179.97438 * 6 4 3 8 8 Si 1.86803 * 119.99874 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.47030 * 90.00224 * 8 6 4 10 10 H 1.48500 * 109.46843 * 210.00058 * 8 6 4 11 11 H 1.48498 * 109.47166 * 330.00308 * 8 6 4 12 12 C 1.34772 * 119.99752 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99760 * 180.02562 * 12 2 1 14 14 C 1.50699 * 120.00254 * 359.97438 * 12 2 1 15 15 C 1.53000 * 109.47188 * 180.02562 * 14 12 2 16 16 H 1.09002 * 110.54474 * 52.15007 * 15 14 12 17 17 S 1.82369 * 110.74375 * 289.20073 * 15 14 12 18 18 C 1.77245 * 94.49153 * 241.42361 * 17 15 14 19 19 N 1.30280 * 126.28172 * 180.02562 * 18 17 15 20 20 N 1.37066 * 107.44439 * 359.97438 * 18 17 15 21 21 C 1.32214 * 120.27892 * 359.97438 * 20 18 17 22 22 O 1.21256 * 122.87304 * 180.02562 * 21 20 18 23 23 H 1.09009 * 109.46792 * 270.00266 * 1 2 3 24 24 H 1.09000 * 109.47015 * 30.00082 * 1 2 3 25 25 H 1.08996 * 109.46891 * 150.00283 * 1 2 3 26 26 H 1.09003 * 109.47116 * 29.99838 * 3 2 1 27 27 H 1.09002 * 109.46852 * 150.00310 * 3 2 1 28 28 H 0.96999 * 119.99741 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.47046 * 60.00229 * 14 12 2 30 30 H 1.09000 * 109.47075 * 300.00076 * 14 12 2 31 31 H 0.96996 * 120.00189 * 179.97438 * 19 18 17 32 32 H 0.96998 * 119.86107 * 180.28147 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1269 2.8775 -1.6728 7 7 3.3465 3.2568 -2.9128 8 14 3.7338 3.9287 -0.2530 9 1 5.1069 3.5069 0.1236 10 1 3.7497 5.3554 -0.6649 11 1 2.8273 3.7596 0.9110 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0005 16 1 3.1042 -3.5190 0.8054 17 16 3.2257 -3.7617 -1.6111 18 6 2.6150 -5.3884 -1.9613 19 7 2.8669 -6.0934 -3.0275 20 7 1.8300 -5.7690 -0.9042 21 6 1.6555 -4.9556 0.1234 22 8 0.9721 -5.2441 1.0826 23 1 -0.3633 0.0000 1.0278 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6084 2.0284 0.5138 27 1 3.1500 1.1384 0.5138 28 1 3.8233 4.0827 -3.0900 29 1 0.7584 -2.5298 -0.8903 30 1 0.7591 -2.5302 0.8897 31 1 2.4828 -6.9787 -3.1255 32 1 1.4043 -6.6406 -0.9079 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742577316.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:07 Heat of formation + Delta-G solvation = -59.015453 kcal Electronic energy + Delta-G solvation = -18446.327321 eV Core-core repulsion = 15339.987921 eV Total energy + Delta-G solvation = -3106.339400 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.07356 -40.64721 -38.25474 -36.67986 -34.88490 -34.55866 -33.48987 -30.56190 -27.71662 -26.98005 -25.04627 -24.16998 -22.12152 -20.16084 -19.38303 -19.24455 -19.09100 -17.91891 -17.47152 -17.11770 -16.76928 -16.53904 -15.95314 -15.63368 -14.93885 -14.69959 -14.16333 -14.08450 -13.87133 -13.65206 -13.58420 -13.13866 -13.05640 -12.73132 -12.38980 -12.22885 -11.99000 -11.81062 -11.69949 -11.00615 -10.81792 -10.78791 -10.68529 -9.37184 -9.23571 -8.29268 -6.34089 -0.15587 0.16895 0.58527 1.36260 1.37992 1.40594 1.48421 1.62586 1.77076 2.28509 2.34898 2.70826 3.05674 3.31643 3.70294 3.95397 4.07175 4.36718 4.40862 4.56728 4.72087 4.86759 4.96600 5.00610 5.03384 5.34703 5.49994 5.62234 6.23170 6.27263 6.66928 6.69384 6.77147 7.24591 7.38902 8.87631 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.028194 B = 0.004986 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.865743 B = 5614.164747 C = 6140.151513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.603 5.603 3 C 0.223 3.777 4 C -0.533 4.533 5 H 0.030 0.970 6 C 0.011 3.989 7 N -0.946 5.946 8 Si 0.946 3.054 9 H -0.277 1.277 10 H -0.279 1.279 11 H -0.236 1.236 12 C 0.501 3.499 13 O -0.579 6.579 14 C -0.107 4.107 15 C -0.094 4.094 16 H 0.162 0.838 17 S -0.016 6.016 18 C 0.386 3.614 19 N -0.674 5.674 20 N -0.675 5.675 21 C 0.552 3.448 22 O -0.502 6.502 23 H 0.083 0.917 24 H 0.066 0.934 25 H 0.090 0.910 26 H 0.051 0.949 27 H 0.023 0.977 28 H 0.267 0.733 29 H 0.124 0.876 30 H 0.148 0.852 31 H 0.361 0.639 32 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.071 -16.798 8.032 20.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.334 5.334 3 C 0.101 3.899 4 C -0.572 4.572 5 H 0.049 0.951 6 C -0.187 4.187 7 N -0.587 5.587 8 Si 0.769 3.231 9 H -0.202 1.202 10 H -0.204 1.204 11 H -0.159 1.159 12 C 0.289 3.711 13 O -0.460 6.460 14 C -0.149 4.149 15 C -0.226 4.226 16 H 0.179 0.821 17 S 0.209 5.791 18 C -0.005 4.005 19 N -0.309 5.309 20 N -0.331 5.331 21 C 0.335 3.665 22 O -0.374 6.374 23 H 0.102 0.898 24 H 0.085 0.915 25 H 0.109 0.891 26 H 0.069 0.931 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.142 0.858 30 H 0.166 0.834 31 H 0.184 0.816 32 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -6.436 -15.714 7.039 18.382 hybrid contribution -0.824 -1.013 0.897 1.584 sum -7.260 -16.726 7.936 19.886 Atomic orbital electron populations 1.22046 0.77488 1.04197 1.03246 1.47875 1.08497 1.05842 1.71195 1.19364 0.92891 0.82415 0.95277 1.21570 1.36518 1.06609 0.92509 0.95116 1.25837 0.95423 0.99027 0.98427 1.70057 1.42828 1.24463 1.21328 0.85740 0.79612 0.77685 0.80039 1.20241 1.20421 1.15911 1.20800 0.87847 0.86165 0.76312 1.90680 1.15680 1.87739 1.51868 1.21663 0.97145 0.87610 1.08444 1.24038 1.01655 0.96249 1.00697 0.82057 1.88618 1.61231 1.08327 1.20899 1.24652 0.90152 0.99498 0.86226 1.70021 1.29523 1.14394 1.16987 1.44296 1.48255 1.21789 1.18765 1.19335 0.80076 0.85289 0.81845 1.90853 1.38383 1.76946 1.31258 0.89848 0.91528 0.89114 0.93131 0.95926 0.92401 0.85771 0.83420 0.81631 0.73272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.80 10.24 127.77 1.31 3.11 16 2 N -0.60 -22.22 2.86 -851.10 -2.43 -24.65 16 3 C 0.22 10.28 4.23 85.63 0.36 10.64 16 4 C -0.53 -30.46 9.94 25.60 0.25 -30.21 16 5 H 0.03 1.97 8.06 -2.91 -0.02 1.94 16 6 C 0.01 0.62 5.47 84.66 0.46 1.08 16 7 N -0.95 -59.38 13.96 21.45 0.30 -59.08 16 8 Si 0.95 43.56 27.47 68.60 1.88 45.45 16 9 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 11 H -0.24 -9.63 6.54 99.48 0.65 -8.98 16 12 C 0.50 17.72 7.48 87.66 0.66 18.37 16 13 O -0.58 -25.60 14.78 -3.03 -0.04 -25.64 16 14 C -0.11 -2.45 3.78 29.85 0.11 -2.34 16 15 C -0.09 -2.14 2.82 29.97 0.08 -2.06 16 16 H 0.16 3.71 7.89 -2.39 -0.02 3.69 16 17 S -0.02 -0.45 21.88 -56.49 -1.24 -1.69 16 18 C 0.39 8.16 8.92 179.67 1.60 9.76 16 19 N -0.67 -14.35 14.13 -56.35 -0.80 -15.15 16 20 N -0.68 -10.97 5.22 -312.66 -1.63 -12.60 16 21 C 0.55 10.84 7.52 88.18 0.66 11.50 16 22 O -0.50 -11.66 18.01 -2.96 -0.05 -11.71 16 23 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 24 H 0.07 1.84 8.07 -2.39 -0.02 1.82 16 25 H 0.09 1.71 6.44 -2.39 -0.02 1.69 16 26 H 0.05 2.14 7.13 -2.39 -0.02 2.12 16 27 H 0.02 1.12 6.85 -2.39 -0.02 1.10 16 28 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 29 H 0.12 2.44 7.40 -2.39 -0.02 2.43 16 30 H 0.15 2.47 8.11 -2.39 -0.02 2.45 16 31 H 0.36 5.37 8.92 -92.71 -0.83 4.55 16 32 H 0.43 4.52 8.91 -92.71 -0.83 3.70 16 Total: -1.00 -77.18 293.71 0.97 -76.21 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -0.53 Total: 9.01 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: 5.51 Total: 19.87 kcal Atomic # 7 Polarization: -106.92 SS G_CDS: -4.56 Total: -111.49 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -0.10 Total: -37.36 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.88 Total: 45.45 kcal Atomic # 16 Polarization: -0.45 SS G_CDS: -1.24 Total: -1.69 kcal Total: -77.18 0.97 -76.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742577316.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.193 kcal (2) G-P(sol) polarization free energy of solvation -77.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds