Wall clock time and date at job start Mon Mar 30 2020 00:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.38179 * 126.44860 * 181.95748 * 3 2 1 5 5 N 1.34446 * 108.38265 * 180.02562 * 4 3 2 6 6 H 0.96997 * 125.41105 * 180.02562 * 5 4 3 7 7 C 1.37753 * 109.18521 * 0.02562 * 5 4 3 8 8 C 1.46776 * 125.84526 * 179.97438 * 7 5 4 9 9 O 1.21704 * 119.99819 * 180.02562 * 8 7 5 10 10 N 1.34776 * 120.00334 * 0.02723 * 8 7 5 11 11 C 1.40526 * 120.00366 * 179.97438 * 10 8 7 12 12 C 1.40665 * 126.08146 * 0.02562 * 11 10 8 13 13 N 1.30904 * 108.39147 * 179.97438 * 12 11 10 14 14 N 1.40078 * 108.40781 * 0.02562 * 13 12 11 15 15 C 1.37314 * 126.06543 * 180.02562 * 14 13 12 16 16 H 1.08006 * 119.99408 * 179.97438 * 15 14 13 17 17 C 1.38983 * 120.00532 * 359.97438 * 15 14 13 18 18 N 1.31296 * 119.99575 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00285 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47351 * 59.99572 * 19 17 15 21 21 H 1.48500 * 109.47424 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47010 * 299.99552 * 19 17 15 23 23 C 1.35690 * 126.08957 * 179.97438 * 11 10 8 24 24 C 1.36416 * 108.30285 * 0.22603 * 7 5 4 25 25 H 1.08001 * 125.81302 * 0.03665 * 4 3 2 26 26 H 0.97007 * 119.99883 * 359.97438 * 10 8 7 27 27 H 1.08005 * 125.80678 * 359.69484 * 12 11 10 28 28 H 0.97006 * 119.99939 * 180.02562 * 18 17 15 29 29 H 1.08008 * 126.24581 * 359.97438 * 23 11 10 30 30 H 1.08000 * 126.48263 * 179.77273 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3884 1.1119 0.0380 5 7 4.6668 0.6958 0.0232 6 1 5.4460 1.2730 0.0431 7 6 4.6943 -0.6807 -0.0248 8 6 5.9010 -1.5157 -0.0548 9 8 5.8013 -2.7279 -0.0974 10 7 7.1196 -0.9401 -0.0350 11 6 8.2749 -1.7396 -0.0631 12 6 8.3088 -3.1450 -0.1126 13 7 9.5606 -3.5277 -0.1266 14 7 10.3724 -2.3869 -0.0862 15 6 11.7454 -2.3713 -0.0865 16 1 12.2747 -1.4304 -0.0535 17 6 12.4540 -3.5662 -0.1293 18 7 11.8104 -4.7099 -0.1689 19 14 14.3218 -3.5450 -0.1290 20 1 14.8092 -2.8830 1.1076 21 1 14.8327 -4.9385 -0.1783 22 1 14.8085 -2.7967 -1.3158 23 6 9.5562 -1.2934 -0.0483 24 6 3.4080 -1.1344 -0.0455 25 1 3.0589 2.1397 0.0737 26 1 7.1991 0.0261 -0.0013 27 1 7.4484 -3.7976 -0.1309 28 1 12.3050 -5.5439 -0.1984 29 1 9.8726 -0.2613 -0.0133 30 1 3.0916 -2.1662 -0.0862 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748530620.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:24 Heat of formation + Delta-G solvation = 100.508124 kcal Electronic energy + Delta-G solvation = -18663.052291 eV Core-core repulsion = 15460.479151 eV Total energy + Delta-G solvation = -3202.573139 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.54393 -41.54281 -39.80500 -37.40436 -35.99131 -35.00581 -32.49359 -32.24301 -30.93001 -29.36227 -26.85682 -24.28630 -23.73852 -22.80173 -21.39720 -21.22903 -20.19008 -19.08808 -17.53676 -17.38242 -16.93285 -16.70735 -16.41163 -15.75607 -15.45103 -15.06311 -14.88416 -14.76520 -14.64401 -14.30040 -14.02851 -13.74965 -13.45562 -13.29760 -12.89600 -12.85888 -12.85780 -12.13174 -11.87023 -11.00415 -10.99940 -10.77365 -10.12477 -10.08445 -9.40335 -8.50901 -8.44883 -6.22344 0.43031 0.80197 1.33537 1.41747 1.57945 1.73098 1.76417 2.02136 2.05239 2.12192 2.27157 2.61358 2.74663 2.92384 3.11719 3.25334 3.91047 4.22544 4.24414 4.45759 4.59607 4.68133 4.94238 5.02087 5.09302 5.29988 5.40367 5.42088 5.62561 5.97593 6.32415 6.39481 6.67950 6.71845 6.75966 7.31868 7.48649 7.70066 8.54166 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.071819 B = 0.003163 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.773783 B = 8850.758267 C = 9230.689825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.317 3.683 3 C -0.163 4.163 4 C 0.149 3.851 5 N -0.503 5.503 6 H 0.445 0.555 7 C -0.050 4.050 8 C 0.571 3.429 9 O -0.568 6.568 10 N -0.609 5.609 11 C -0.045 4.045 12 C -0.059 4.059 13 N -0.312 5.312 14 N -0.169 5.169 15 C -0.353 4.353 16 H 0.143 0.857 17 C -0.007 4.007 18 N -0.825 5.825 19 Si 1.018 2.982 20 H -0.253 1.253 21 H -0.281 1.281 22 H -0.253 1.253 23 C -0.076 4.076 24 C -0.066 4.066 25 H 0.241 0.759 26 H 0.417 0.583 27 H 0.167 0.833 28 H 0.276 0.724 29 H 0.193 0.807 30 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.081 17.172 0.598 18.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C 0.004 3.996 3 C -0.173 4.173 4 C 0.002 3.998 5 N -0.099 5.099 6 H 0.288 0.712 7 C -0.162 4.162 8 C 0.360 3.640 9 O -0.447 6.447 10 N -0.253 5.253 11 C -0.151 4.151 12 C -0.234 4.234 13 N -0.144 5.144 14 N 0.063 4.937 15 C -0.484 4.484 16 H 0.160 0.840 17 C -0.219 4.219 18 N -0.453 5.453 19 Si 0.837 3.163 20 H -0.177 1.177 21 H -0.206 1.206 22 H -0.177 1.177 23 C -0.227 4.227 24 C -0.093 4.093 25 H 0.257 0.743 26 H 0.255 0.745 27 H 0.184 0.816 28 H 0.085 0.915 29 H 0.210 0.790 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.854 15.121 0.527 17.047 hybrid contribution 0.739 0.507 0.017 0.896 sum -7.115 15.628 0.544 17.180 Atomic orbital electron populations 1.81289 1.13249 1.08887 1.13296 1.24811 0.91577 0.92169 0.91069 1.15372 0.84135 0.94799 1.23042 1.22989 0.80874 1.00095 0.95834 1.41757 1.09499 1.05209 1.53450 0.71185 1.19383 0.93350 0.83450 1.19983 1.17416 0.82152 0.87082 0.77365 1.90755 1.86243 1.15491 1.52240 1.42147 1.02460 1.09316 1.71410 1.17228 0.86081 0.90112 1.21709 1.24209 0.95586 0.94580 1.09043 1.78181 1.00194 1.08602 1.27425 1.44847 1.05756 1.02805 1.40322 1.20582 0.76986 0.96933 1.53926 0.83959 1.26873 1.06981 0.93842 0.94202 1.70397 1.38919 0.98687 1.37332 0.84663 0.73230 0.78117 0.80284 1.17690 1.20589 1.17678 1.22031 0.88703 0.94248 1.17675 1.21059 0.89913 0.99166 0.99211 0.74250 0.74540 0.81577 0.91460 0.79034 0.83753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.62 18.54 19.01 0.35 -12.27 16 2 C 0.32 6.43 15.83 88.33 1.40 7.83 16 3 C -0.16 -2.53 5.97 -21.30 -0.13 -2.65 16 4 C 0.15 0.92 11.90 84.28 1.00 1.92 16 5 N -0.50 -4.19 5.92 -183.25 -1.08 -5.28 16 6 H 0.45 0.43 8.13 -92.71 -0.75 -0.33 16 7 C -0.05 -1.02 6.99 40.02 0.28 -0.74 16 8 C 0.57 17.81 7.76 86.48 0.67 18.48 16 9 O -0.57 -23.84 14.00 -4.36 -0.06 -23.90 16 10 N -0.61 -17.92 5.46 -307.41 -1.68 -19.60 16 11 C -0.05 -1.92 6.90 37.75 0.26 -1.66 16 12 C -0.06 -3.10 10.85 85.42 0.93 -2.18 16 13 N -0.31 -18.41 10.40 -56.45 -0.59 -18.99 16 14 N -0.17 -9.00 3.74 -190.00 -0.71 -9.71 16 15 C -0.35 -18.03 10.25 84.01 0.86 -17.17 16 16 H 0.14 6.17 7.83 -2.91 -0.02 6.15 16 17 C -0.01 -0.37 5.50 84.95 0.47 0.09 16 18 N -0.83 -47.05 11.81 21.66 0.26 -46.79 16 19 Si 1.02 37.51 29.55 68.60 2.03 39.54 16 20 H -0.25 -8.66 7.11 99.48 0.71 -7.95 16 21 H -0.28 -10.39 7.11 99.48 0.71 -9.68 16 22 H -0.25 -8.65 7.11 99.48 0.71 -7.95 16 23 C -0.08 -3.25 11.49 83.38 0.96 -2.29 16 24 C -0.07 -1.39 10.54 22.59 0.24 -1.15 16 25 H 0.24 -1.00 8.06 -2.91 -0.02 -1.03 16 26 H 0.42 7.44 7.90 -92.70 -0.73 6.71 16 27 H 0.17 8.93 5.91 -2.91 -0.02 8.91 16 28 H 0.28 14.53 8.31 -92.70 -0.77 13.76 16 29 H 0.19 6.10 8.06 -2.91 -0.02 6.07 16 30 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -83.67 286.96 5.20 -78.46 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -0.25 Total: 18.07 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 6.94 Total: 0.48 kcal Atomic # 7 Polarization: -109.19 SS G_CDS: -3.45 Total: -112.64 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.06 Total: -23.90 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.54 kcal Total: -83.67 5.20 -78.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748530620.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.971 kcal (2) G-P(sol) polarization free energy of solvation -83.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds