Wall clock time and date at job start Mon Mar 30 2020 00:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.38083 * 125.89499 * 216.18832 * 3 2 1 5 5 C 1.39348 * 107.52067 * 180.02562 * 4 3 2 6 6 C 1.38023 * 107.48870 * 0.02562 * 5 4 3 7 7 C 1.47022 * 125.91917 * 179.97438 * 6 5 4 8 8 O 1.21679 * 119.99945 * 0.02562 * 7 6 5 9 9 N 1.34771 * 119.99999 * 180.02562 * 7 6 5 10 10 C 1.40494 * 120.00119 * 180.02562 * 9 7 6 11 11 C 1.40677 * 126.08622 * 0.02562 * 10 9 7 12 12 N 1.30901 * 108.38561 * 179.73894 * 11 10 9 13 13 N 1.40075 * 108.41603 * 0.40225 * 12 11 10 14 14 C 1.37307 * 126.06679 * 179.85588 * 13 12 11 15 15 H 1.08002 * 120.00270 * 179.69237 * 14 13 12 16 16 C 1.38992 * 119.99825 * 359.41118 * 14 13 12 17 17 N 1.31294 * 120.00157 * 0.27648 * 16 14 13 18 18 Si 1.86803 * 119.99838 * 180.27794 * 16 14 13 19 19 H 1.48504 * 109.47384 * 60.00081 * 18 16 14 20 20 H 1.48504 * 109.47036 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46993 * 299.99983 * 18 16 14 22 22 C 1.35716 * 126.08835 * 179.97438 * 10 9 7 23 23 N 1.36755 * 125.89825 * 36.50394 * 3 2 1 24 24 H 0.96993 * 125.68858 * 0.02562 * 23 3 2 25 25 H 1.08007 * 126.23916 * 0.04646 * 4 3 2 26 26 H 1.08002 * 126.25323 * 179.97438 * 5 4 3 27 27 H 0.97006 * 120.00412 * 0.02562 * 9 7 6 28 28 H 1.08000 * 125.80703 * 359.97438 * 11 10 9 29 29 H 0.97005 * 119.99961 * 179.97438 * 17 16 14 30 30 H 1.08003 * 126.24761 * 0.02842 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3772 0.9038 0.6605 5 6 4.6998 0.5502 0.4006 6 6 4.6790 -0.5630 -0.4150 7 6 5.8565 -1.2726 -0.9362 8 8 6.9747 -0.8853 -0.6531 9 7 5.6973 -2.3519 -1.7274 10 6 6.8225 -3.0303 -2.2250 11 6 8.1668 -2.6962 -1.9799 12 7 8.9272 -3.5587 -2.6056 13 7 8.1026 -4.4683 -3.2798 14 6 8.5238 -5.5223 -4.0524 15 1 7.7992 -6.1683 -4.5259 16 6 9.8826 -5.7545 -4.2299 17 7 10.7635 -4.9691 -3.6544 18 14 10.4556 -7.1838 -5.2874 19 1 9.9367 -7.0169 -6.6688 20 1 11.9401 -7.2144 -5.3160 21 1 9.9457 -8.4567 -4.7175 22 6 6.8060 -4.1250 -3.0270 23 7 3.3703 -0.8895 -0.6590 24 1 3.0643 -1.6291 -1.2067 25 1 3.0455 1.7329 1.2680 26 1 5.5802 1.0555 0.7693 27 1 4.8058 -2.6605 -1.9534 28 1 8.5127 -1.8711 -1.3750 29 1 11.7118 -5.1314 -3.7781 30 1 5.9272 -4.6316 -3.3981 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751793539.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:20 Heat of formation + Delta-G solvation = 129.526311 kcal Electronic energy + Delta-G solvation = -18699.676977 eV Core-core repulsion = 15498.362161 eV Total energy + Delta-G solvation = -3201.314816 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.60759 -39.86812 -38.40508 -36.74092 -34.46655 -33.30523 -31.50225 -30.50023 -30.00714 -27.82028 -25.20521 -23.80559 -21.68384 -20.99334 -20.66385 -19.54582 -19.47784 -17.76144 -16.99215 -15.56255 -15.45014 -15.36338 -14.79893 -14.42513 -14.41692 -13.93434 -13.69252 -13.38556 -13.37266 -13.11506 -12.94615 -12.78411 -12.46086 -11.74099 -11.55267 -11.30147 -11.05746 -10.60874 -10.34156 -9.58422 -9.41718 -9.26276 -8.90693 -8.55846 -8.15195 -6.82650 -6.62882 -4.30913 0.78542 1.93394 2.01888 2.79123 2.90876 3.00297 3.04999 3.13594 3.25587 3.33736 3.67290 3.68458 3.80529 4.33992 4.59840 4.89100 4.92867 4.95131 5.07778 5.64605 5.84175 6.11639 6.21691 6.34782 6.50004 6.74149 6.81996 6.84944 6.97029 7.09257 7.13520 7.76729 7.97750 8.15494 8.46927 8.66646 9.28127 9.57207 10.32785 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.046535 B = 0.003357 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.547013 B = 8337.578518 C = 8929.271946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C 0.279 3.721 3 C 0.074 3.926 4 C -0.121 4.121 5 C -0.122 4.122 6 C 0.020 3.980 7 C 0.565 3.435 8 O -0.513 6.513 9 N -0.617 5.617 10 C -0.066 4.066 11 C -0.027 4.027 12 N -0.260 5.260 13 N -0.139 5.139 14 C -0.323 4.323 15 H 0.117 0.883 16 C 0.047 3.953 17 N -0.767 5.767 18 Si 0.935 3.065 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.266 1.266 22 C -0.083 4.083 23 N -0.517 5.517 24 H 0.422 0.578 25 H 0.157 0.843 26 H 0.162 0.838 27 H 0.391 0.609 28 H 0.178 0.822 29 H 0.277 0.723 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.537 5.609 4.095 13.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.082 5.082 2 C -0.036 4.036 3 C -0.043 4.043 4 C -0.149 4.149 5 C -0.148 4.148 6 C -0.099 4.099 7 C 0.350 3.650 8 O -0.388 6.388 9 N -0.258 5.258 10 C -0.171 4.171 11 C -0.203 4.203 12 N -0.091 5.091 13 N 0.094 4.906 14 C -0.456 4.456 15 H 0.134 0.866 16 C -0.171 4.171 17 N -0.393 5.393 18 Si 0.759 3.241 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.191 1.191 22 C -0.235 4.235 23 N -0.115 5.115 24 H 0.261 0.739 25 H 0.174 0.826 26 H 0.180 0.820 27 H 0.223 0.777 28 H 0.195 0.805 29 H 0.087 0.913 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.026 5.406 3.947 12.898 hybrid contribution -0.992 -0.984 -0.734 1.579 sum -12.018 4.422 3.213 13.202 Atomic orbital electron populations 1.81328 1.11271 1.07126 1.08491 1.24358 0.90859 0.94414 0.93977 1.15549 0.83022 0.98477 1.07234 1.21253 0.91663 0.99813 1.02202 1.21275 0.97620 0.96006 0.99895 1.20938 0.82056 1.01048 1.05882 1.16888 0.87127 0.80707 0.80262 1.90768 1.23258 1.66030 1.58743 1.42357 1.07890 1.27848 1.47733 1.17193 0.86663 1.01100 1.12164 1.24145 0.89369 1.02109 1.04676 1.78288 1.15608 1.02230 1.12949 1.44565 1.01803 1.17275 1.26934 1.19854 0.93056 1.05208 1.27443 0.86576 1.25655 0.95662 0.98628 0.97162 1.70199 1.02362 1.32953 1.33810 0.85882 0.78292 0.80089 0.79827 1.19122 1.20054 1.19121 1.21240 0.89334 1.02371 1.10525 1.41933 1.05381 1.25188 1.38951 0.73918 0.82572 0.82039 0.77680 0.80523 0.91260 0.83690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.71 18.54 41.84 0.78 -3.93 16 2 C 0.28 2.68 15.89 -22.47 -0.36 2.32 16 3 C 0.07 0.64 6.93 -83.80 -0.58 0.06 16 4 C -0.12 -1.00 10.80 -39.23 -0.42 -1.42 16 5 C -0.12 -1.26 10.60 -39.25 -0.42 -1.67 16 6 C 0.02 0.23 7.04 -82.05 -0.58 -0.35 16 7 C 0.56 9.00 7.77 -12.70 -0.10 8.90 16 8 O -0.51 -10.15 14.02 5.21 0.07 -10.08 16 9 N -0.62 -9.85 5.46 -11.08 -0.06 -9.92 16 10 C -0.07 -1.42 6.90 -83.87 -0.58 -2.00 16 11 C -0.03 -0.69 10.85 -17.03 -0.18 -0.87 16 12 N -0.26 -7.30 10.39 30.81 0.32 -6.98 16 13 N -0.14 -3.67 3.74 -11.40 -0.04 -3.72 16 14 C -0.32 -8.27 10.25 -14.82 -0.15 -8.42 16 15 H 0.12 2.63 7.83 -52.49 -0.41 2.22 16 16 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 17 N -0.77 -20.86 11.81 55.50 0.66 -20.21 16 18 Si 0.94 18.35 29.55 -169.99 -5.02 13.32 16 19 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 20 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 22 C -0.08 -1.86 11.49 -16.38 -0.19 -2.05 16 23 N -0.52 -4.46 6.02 -6.96 -0.04 -4.50 16 24 H 0.42 2.58 8.15 -40.82 -0.33 2.24 16 25 H 0.16 0.89 8.06 -52.48 -0.42 0.47 16 26 H 0.16 1.57 8.06 -52.49 -0.42 1.14 16 27 H 0.39 4.51 7.92 -40.82 -0.32 4.19 16 28 H 0.18 4.36 5.91 -52.49 -0.31 4.05 16 29 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.15 2.65 8.06 -52.48 -0.42 2.22 16 LS Contribution 287.17 15.07 4.33 4.33 Total: -1.00 -32.89 287.17 -4.45 -37.34 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -1.78 Total: 8.78 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -3.65 Total: -4.43 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 1.61 Total: -49.26 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.07 Total: -10.08 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.02 Total: 13.32 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.89 -4.45 -37.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751793539.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.870 kcal (2) G-P(sol) polarization free energy of solvation -32.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds