Wall clock time and date at job start Mon Mar 30 2020 00:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31291 * 1 3 3 Si 1.86804 * 119.99717 * 2 1 4 4 H 1.48496 * 109.47255 * 269.99476 * 3 2 1 5 5 H 1.48497 * 109.47089 * 30.00021 * 3 2 1 6 6 H 1.48510 * 109.46865 * 149.99661 * 3 2 1 7 7 C 1.38984 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00056 * 180.02562 * 7 2 1 9 9 N 1.37323 * 119.99725 * 0.02562 * 7 2 1 10 10 C 1.36495 * 126.06816 * 179.97438 * 9 7 2 11 11 C 1.35678 * 107.51092 * 180.02562 * 10 9 7 12 12 N 1.40588 * 126.08563 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00370 * 180.02562 * 12 11 10 14 14 O 1.21306 * 120.00047 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00322 * 180.02562 * 13 12 11 16 16 C 1.53777 * 113.61036 * 279.13435 * 15 13 12 17 17 C 1.53955 * 87.02005 * 220.04512 * 16 15 13 18 18 F 1.39899 * 113.54310 * 270.81245 * 17 16 15 19 19 F 1.39904 * 113.66773 * 139.92831 * 17 16 15 20 20 C 1.53780 * 87.11022 * 25.36533 * 17 16 15 21 21 C 1.40653 * 107.83340 * 359.97438 * 11 10 9 22 22 N 1.30910 * 108.38789 * 0.02562 * 21 11 10 23 23 H 0.97003 * 119.99973 * 0.02562 * 1 2 3 24 24 H 1.07999 * 126.24260 * 359.75876 * 10 9 7 25 25 H 0.97001 * 119.99793 * 359.97438 * 12 11 10 26 26 H 1.08997 * 112.84814 * 50.32789 * 15 13 12 27 27 H 1.08995 * 113.61875 * 334.56491 * 16 15 13 28 28 H 1.09005 * 113.61765 * 105.47110 * 16 15 13 29 29 H 1.08996 * 113.61558 * 220.09219 * 20 17 16 30 30 H 1.08997 * 113.69237 * 89.19493 * 20 17 16 31 31 H 1.07997 * 125.80570 * 179.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.4945 2.0465 -1.4000 5 1 1.4443 2.6527 0.7000 6 1 3.5445 1.4403 0.7002 7 6 2.0079 -1.2036 0.0005 8 1 3.0879 -1.2036 0.0010 9 7 1.3213 -2.3929 0.0005 10 6 1.8750 -3.6405 0.0005 11 6 0.8579 -4.5385 0.0000 12 7 0.9891 -5.9382 -0.0007 13 6 -0.1100 -6.7182 -0.0018 14 8 -1.2126 -6.2125 -0.0017 15 6 0.0308 -8.2186 -0.0020 16 6 0.3121 -8.8107 -1.3930 17 6 -0.6490 -9.9518 -1.0132 18 9 -0.0176 -11.0255 -0.3764 19 9 -1.4841 -10.3548 -2.0609 20 6 -1.3141 -8.9635 -0.0408 21 6 -0.3512 -3.8199 0.0002 22 7 -0.0715 -2.5410 0.0003 23 1 -0.4850 0.8401 -0.0004 24 1 2.9301 -3.8707 -0.0031 25 1 1.8708 -6.3426 -0.0012 26 1 0.7081 -8.5803 0.7716 27 1 -0.0493 -8.1901 -2.2130 28 1 1.3439 -9.1347 -1.5292 29 1 -1.5932 -9.4106 0.9132 30 1 -2.1212 -8.3842 -0.4890 31 1 -1.3418 -4.2500 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753598376.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:03 Heat of formation + Delta-G solvation = -29.340825 kcal Electronic energy + Delta-G solvation = -19994.262185 eV Core-core repulsion = 16335.369187 eV Total energy + Delta-G solvation = -3658.892998 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.97765 -47.30867 -40.19157 -39.12697 -36.78457 -34.26907 -33.17734 -30.29023 -28.18972 -26.44442 -26.14793 -24.58681 -21.59881 -20.86061 -19.74813 -19.46618 -18.11450 -17.40086 -16.89105 -16.40147 -16.11007 -15.52324 -15.30943 -14.93700 -14.18654 -14.14828 -14.01655 -13.61571 -13.57722 -13.14519 -12.97005 -12.77086 -12.02134 -11.75472 -11.62081 -11.58307 -11.43343 -11.27446 -10.97311 -10.64720 -10.55446 -10.21630 -9.26803 -9.20218 -8.84189 -8.09641 -6.74933 -6.58447 -4.26094 2.68421 2.98257 3.03113 3.08533 3.22372 3.45089 3.58774 3.65570 3.84033 4.05346 4.16339 4.32677 4.41978 4.74705 4.99497 5.08267 5.20851 5.23152 5.29314 5.39451 5.56110 5.94740 6.20621 6.41445 6.85758 6.91672 7.06567 7.20304 7.82576 8.11649 8.24039 8.58313 8.78553 9.34387 9.63484 10.37509 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.063057 B = 0.003404 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.933464 B = 8222.682845 C = 8420.427508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.324 4.324 8 H 0.117 0.883 9 N -0.142 5.142 10 C -0.083 4.083 11 C -0.064 4.064 12 N -0.619 5.619 13 C 0.510 3.490 14 O -0.531 6.531 15 C -0.128 4.128 16 C -0.149 4.149 17 C 0.253 3.747 18 F -0.181 7.181 19 F -0.189 7.189 20 C -0.139 4.139 21 C -0.032 4.032 22 N -0.261 5.261 23 H 0.275 0.725 24 H 0.146 0.854 25 H 0.398 0.602 26 H 0.123 0.877 27 H 0.118 0.882 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.127 0.873 31 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.400 -14.603 -0.802 15.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.134 0.866 9 N 0.091 4.909 10 C -0.234 4.234 11 C -0.169 4.169 12 N -0.260 5.260 13 C 0.295 3.705 14 O -0.408 6.408 15 C -0.150 4.150 16 C -0.187 4.187 17 C 0.216 3.784 18 F -0.162 7.162 19 F -0.170 7.170 20 C -0.178 4.178 21 C -0.208 4.208 22 N -0.092 5.092 23 H 0.086 0.914 24 H 0.163 0.837 25 H 0.231 0.769 26 H 0.141 0.859 27 H 0.136 0.864 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.145 0.855 31 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.921 -12.925 -0.806 13.092 hybrid contribution 1.365 -0.624 -0.013 1.500 sum 3.286 -13.548 -0.818 13.965 Atomic orbital electron populations 1.70214 1.06146 1.28034 1.35193 1.25643 0.95705 1.00287 0.95448 0.85824 0.79391 0.79928 0.78988 1.19571 1.20065 1.18798 1.19883 0.91677 0.80556 1.53496 0.86590 1.44559 1.04051 1.03322 1.38988 1.21263 0.96840 0.85381 1.19941 1.17280 0.94335 0.81240 1.24075 1.42474 1.08176 1.04575 1.70791 1.19762 0.84655 0.87412 0.78638 1.90613 1.25836 1.74448 1.49943 1.22494 0.99707 0.93775 0.99003 1.24069 1.01294 0.94963 0.98420 1.22104 0.89180 0.82499 0.84586 1.93013 1.82465 1.58884 1.81795 1.93019 1.72551 1.92513 1.58898 1.23969 0.98460 0.94840 1.00503 1.24109 0.98007 0.90754 1.07916 1.78263 0.90124 1.15082 1.25716 0.91424 0.83692 0.76922 0.85882 0.86361 0.88095 0.88413 0.85456 0.80742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.33 11.81 55.49 0.66 -20.68 16 2 C 0.05 1.19 5.50 -17.51 -0.10 1.09 16 3 Si 0.93 18.68 29.55 -169.99 -5.02 13.66 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.04 7.11 56.52 0.40 -4.63 16 7 C -0.32 -8.47 10.25 -14.81 -0.15 -8.62 16 8 H 0.12 2.70 7.83 -52.48 -0.41 2.29 16 9 N -0.14 -3.84 3.74 -11.41 -0.04 -3.88 16 10 C -0.08 -1.91 11.49 -16.39 -0.19 -2.10 16 11 C -0.06 -1.42 6.90 -83.84 -0.58 -2.00 16 12 N -0.62 -10.22 5.47 -10.00 -0.05 -10.27 16 13 C 0.51 8.10 7.32 -10.99 -0.08 8.02 16 14 O -0.53 -10.63 13.06 5.54 0.07 -10.56 16 15 C -0.13 -1.36 4.12 -90.96 -0.37 -1.74 16 16 C -0.15 -1.39 7.43 -25.83 -0.19 -1.58 16 17 C 0.25 2.64 3.28 -25.83 -0.08 2.55 16 18 F -0.18 -1.96 17.38 2.25 0.04 -1.92 16 19 F -0.19 -2.28 17.41 2.25 0.04 -2.24 16 20 C -0.14 -1.47 7.19 -25.92 -0.19 -1.66 16 21 C -0.03 -0.84 10.85 -17.03 -0.18 -1.02 16 22 N -0.26 -7.51 10.40 30.80 0.32 -7.19 16 23 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 24 H 0.15 2.75 8.06 -52.49 -0.42 2.33 16 25 H 0.40 4.91 8.83 -40.82 -0.36 4.55 16 26 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.12 1.18 8.09 -51.93 -0.42 0.76 16 28 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.13 1.51 7.45 -51.93 -0.39 1.13 16 31 H 0.18 4.46 5.92 -52.49 -0.31 4.15 16 LS Contribution 283.38 15.07 4.27 4.27 Total: -1.00 -32.75 283.38 -4.56 -37.30 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -2.71 Total: 8.58 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -2.12 Total: -7.07 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.88 Total: -42.02 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.07 Total: -10.56 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.08 Total: -4.16 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.02 Total: 13.66 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.75 -4.56 -37.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753598376.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.964 kcal (2) G-P(sol) polarization free energy of solvation -32.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds