Wall clock time and date at job start Mon Mar 30 2020 00:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31291 * 1 3 3 Si 1.86804 * 119.99717 * 2 1 4 4 H 1.48496 * 109.47255 * 269.99476 * 3 2 1 5 5 H 1.48497 * 109.47089 * 30.00021 * 3 2 1 6 6 H 1.48510 * 109.46865 * 149.99661 * 3 2 1 7 7 C 1.38984 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00056 * 180.02562 * 7 2 1 9 9 N 1.37323 * 119.99725 * 0.02562 * 7 2 1 10 10 C 1.36495 * 126.06816 * 179.97438 * 9 7 2 11 11 C 1.35678 * 107.51092 * 180.02562 * 10 9 7 12 12 N 1.40588 * 126.08563 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00370 * 180.02562 * 12 11 10 14 14 O 1.21306 * 120.00047 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00322 * 180.02562 * 13 12 11 16 16 C 1.53777 * 113.61036 * 279.13435 * 15 13 12 17 17 C 1.53955 * 87.02005 * 220.04512 * 16 15 13 18 18 F 1.39899 * 113.54310 * 270.81245 * 17 16 15 19 19 F 1.39904 * 113.66773 * 139.92831 * 17 16 15 20 20 C 1.53780 * 87.11022 * 25.36533 * 17 16 15 21 21 C 1.40653 * 107.83340 * 359.97438 * 11 10 9 22 22 N 1.30910 * 108.38789 * 0.02562 * 21 11 10 23 23 H 0.97003 * 119.99973 * 0.02562 * 1 2 3 24 24 H 1.07999 * 126.24260 * 359.75876 * 10 9 7 25 25 H 0.97001 * 119.99793 * 359.97438 * 12 11 10 26 26 H 1.08997 * 112.84814 * 50.32789 * 15 13 12 27 27 H 1.08995 * 113.61875 * 334.56491 * 16 15 13 28 28 H 1.09005 * 113.61765 * 105.47110 * 16 15 13 29 29 H 1.08996 * 113.61558 * 220.09219 * 20 17 16 30 30 H 1.08997 * 113.69237 * 89.19493 * 20 17 16 31 31 H 1.07997 * 125.80570 * 179.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.4945 2.0465 -1.4000 5 1 1.4443 2.6527 0.7000 6 1 3.5445 1.4403 0.7002 7 6 2.0079 -1.2036 0.0005 8 1 3.0879 -1.2036 0.0010 9 7 1.3213 -2.3929 0.0005 10 6 1.8750 -3.6405 0.0005 11 6 0.8579 -4.5385 0.0000 12 7 0.9891 -5.9382 -0.0007 13 6 -0.1100 -6.7182 -0.0018 14 8 -1.2126 -6.2125 -0.0017 15 6 0.0308 -8.2186 -0.0020 16 6 0.3121 -8.8107 -1.3930 17 6 -0.6490 -9.9518 -1.0132 18 9 -0.0176 -11.0255 -0.3764 19 9 -1.4841 -10.3548 -2.0609 20 6 -1.3141 -8.9635 -0.0408 21 6 -0.3512 -3.8199 0.0002 22 7 -0.0715 -2.5410 0.0003 23 1 -0.4850 0.8401 -0.0004 24 1 2.9301 -3.8707 -0.0031 25 1 1.8708 -6.3426 -0.0012 26 1 0.7081 -8.5803 0.7716 27 1 -0.0493 -8.1901 -2.2130 28 1 1.3439 -9.1347 -1.5292 29 1 -1.5932 -9.4106 0.9132 30 1 -2.1212 -8.3842 -0.4890 31 1 -1.3418 -4.2500 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753598376.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:02 Heat of formation + Delta-G solvation = -51.645661 kcal Electronic energy + Delta-G solvation = -19995.229396 eV Core-core repulsion = 16335.369187 eV Total energy + Delta-G solvation = -3659.860209 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.83229 -48.17647 -41.76840 -40.64889 -37.88234 -35.90245 -34.93980 -32.23649 -29.89717 -27.54383 -27.23956 -26.22940 -22.99499 -22.48858 -21.25492 -20.78698 -19.48009 -18.83578 -17.77392 -17.42423 -17.33514 -17.13599 -16.85154 -16.18546 -15.72092 -15.40520 -15.04772 -14.96781 -14.82516 -14.68384 -14.45217 -13.62022 -13.48840 -13.30460 -13.00122 -12.90842 -12.82554 -12.49125 -12.42036 -12.08007 -11.82466 -11.43622 -11.00222 -10.82561 -10.64813 -10.09222 -8.51644 -8.46007 -6.23394 1.21209 1.40922 1.50167 1.58625 1.86793 2.03897 2.25215 2.47196 2.50692 2.77650 2.92037 3.10139 3.20991 3.31788 3.49567 4.08825 4.30768 4.40912 4.46607 4.50499 4.62795 4.67222 4.76042 5.01558 5.08381 5.14550 5.31233 5.49370 5.97214 6.33122 6.75318 6.77195 7.40188 7.48551 7.70063 8.53400 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.063057 B = 0.003404 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.933464 B = 8222.682845 C = 8420.427508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C -0.006 4.006 3 Si 1.019 2.981 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.244 1.244 7 C -0.355 4.355 8 H 0.142 0.858 9 N -0.169 5.169 10 C -0.079 4.079 11 C -0.046 4.046 12 N -0.610 5.610 13 C 0.510 3.490 14 O -0.575 6.575 15 C -0.114 4.114 16 C -0.139 4.139 17 C 0.255 3.745 18 F -0.179 7.179 19 F -0.200 7.200 20 C -0.145 4.145 21 C -0.060 4.060 22 N -0.313 5.313 23 H 0.276 0.724 24 H 0.189 0.811 25 H 0.422 0.578 26 H 0.161 0.839 27 H 0.110 0.890 28 H 0.133 0.867 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.152 -15.993 -0.645 17.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.218 4.218 3 Si 0.838 3.162 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.167 1.167 7 C -0.486 4.486 8 H 0.159 0.841 9 N 0.062 4.938 10 C -0.229 4.229 11 C -0.153 4.153 12 N -0.255 5.255 13 C 0.298 3.702 14 O -0.455 6.455 15 C -0.135 4.135 16 C -0.177 4.177 17 C 0.219 3.781 18 F -0.160 7.160 19 F -0.181 7.181 20 C -0.183 4.183 21 C -0.235 4.235 22 N -0.145 5.145 23 H 0.085 0.915 24 H 0.206 0.794 25 H 0.260 0.740 26 H 0.178 0.822 27 H 0.128 0.872 28 H 0.151 0.849 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.714 -14.381 -0.650 15.148 hybrid contribution 0.457 -0.398 -0.062 0.609 sum 5.171 -14.778 -0.712 15.673 Atomic orbital electron populations 1.70399 1.08443 1.29043 1.37507 1.26865 0.96443 1.04329 0.94146 0.84598 0.78315 0.74123 0.79205 1.18935 1.20333 1.16667 1.20623 0.92979 0.80930 1.54075 0.84114 1.44842 1.03602 1.04874 1.40526 1.22034 0.98903 0.84156 1.17827 1.17353 0.92656 0.83994 1.21257 1.42438 1.09992 1.02138 1.70934 1.20733 0.83561 0.89516 0.76398 1.90610 1.27715 1.75839 1.51300 1.22529 1.00643 0.89138 1.01182 1.24064 1.02855 0.93770 0.97056 1.22081 0.89300 0.82538 0.84221 1.93020 1.82338 1.58915 1.81744 1.93000 1.73057 1.92634 1.59442 1.23991 0.98113 0.94851 1.01361 1.24180 0.99105 0.90935 1.09307 1.78153 0.92114 1.16731 1.27461 0.91461 0.79387 0.74030 0.82199 0.87203 0.84869 0.86852 0.87326 0.81571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.58 11.81 21.66 0.26 -47.32 16 2 C -0.01 -0.33 5.50 84.95 0.47 0.14 16 3 Si 1.02 38.19 29.55 68.60 2.03 40.21 16 4 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 5 H -0.28 -10.39 7.11 99.48 0.71 -9.68 16 6 H -0.24 -8.23 7.11 99.48 0.71 -7.53 16 7 C -0.36 -18.57 10.25 84.01 0.86 -17.71 16 8 H 0.14 6.33 7.83 -2.91 -0.02 6.31 16 9 N -0.17 -9.27 3.74 -190.01 -0.71 -9.98 16 10 C -0.08 -3.52 11.49 83.37 0.96 -2.56 16 11 C -0.05 -2.04 6.90 37.73 0.26 -1.78 16 12 N -0.61 -18.74 5.47 -303.93 -1.66 -20.40 16 13 C 0.51 15.36 7.32 87.66 0.64 16.00 16 14 O -0.58 -23.23 13.06 -3.11 -0.04 -23.27 16 15 C -0.11 -2.06 4.12 -11.01 -0.05 -2.11 16 16 C -0.14 -2.14 7.43 31.18 0.23 -1.91 16 17 C 0.25 4.67 3.28 31.18 0.10 4.77 16 18 F -0.18 -3.31 17.38 44.97 0.78 -2.52 16 19 F -0.20 -4.55 17.41 44.97 0.78 -3.76 16 20 C -0.14 -2.79 7.19 31.12 0.22 -2.57 16 21 C -0.06 -3.20 10.85 85.42 0.93 -2.28 16 22 N -0.31 -18.70 10.40 -56.46 -0.59 -19.29 16 23 H 0.28 14.62 8.31 -92.71 -0.77 13.85 16 24 H 0.19 6.47 8.06 -2.91 -0.02 6.44 16 25 H 0.42 8.75 8.83 -92.71 -0.82 7.93 16 26 H 0.16 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.11 1.95 8.09 -2.39 -0.02 1.93 16 28 H 0.13 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.11 2.57 7.45 -2.39 -0.02 2.55 16 31 H 0.17 8.98 5.92 -2.91 -0.02 8.96 16 Total: -1.00 -75.43 283.38 5.85 -69.58 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 0.37 Total: 26.75 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 4.63 Total: -9.99 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -2.70 Total: -96.99 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.04 Total: -23.27 kcal Atomic # 9 Polarization: -7.85 SS G_CDS: 1.56 Total: -6.29 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.21 kcal Total: -75.43 5.85 -69.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753598376.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.932 kcal (2) G-P(sol) polarization free energy of solvation -75.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds