Wall clock time and date at job start Mon Mar 30 2020 00:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.36362 * 125.84086 * 273.03627 * 3 2 1 5 5 C 1.41423 * 107.01190 * 180.26377 * 4 3 2 6 6 C 1.47368 * 126.46440 * 179.75890 * 5 4 3 7 7 O 1.21635 * 120.00424 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00197 * 180.02562 * 6 5 4 9 9 C 1.40555 * 120.00464 * 180.02562 * 8 6 5 10 10 C 1.40659 * 126.08136 * 359.69611 * 9 8 6 11 11 N 1.30911 * 108.38964 * 179.81455 * 10 9 8 12 12 N 1.40076 * 108.40628 * 0.44041 * 11 10 9 13 13 C 1.37311 * 126.06773 * 179.69771 * 12 11 10 14 14 H 1.08006 * 120.00218 * 174.16060 * 13 12 11 15 15 C 1.38989 * 119.99997 * 354.15339 * 13 12 11 16 16 N 1.31293 * 120.00025 * 5.94224 * 15 13 12 17 17 Si 1.86801 * 119.99879 * 185.93698 * 15 13 12 18 18 H 1.48505 * 109.46840 * 94.98196 * 17 15 13 19 19 H 1.48500 * 109.47175 * 214.98386 * 17 15 13 20 20 H 1.48504 * 109.47483 * 334.98841 * 17 15 13 21 21 C 1.35686 * 126.08558 * 179.97438 * 9 8 6 22 22 C 1.38122 * 107.06775 * 359.61768 * 5 4 3 23 23 N 1.34452 * 108.38464 * 0.38394 * 22 5 4 24 24 H 0.96996 * 125.39394 * 179.77076 * 23 22 5 25 25 H 1.08003 * 126.49269 * 0.02562 * 4 3 2 26 26 H 0.97006 * 119.99668 * 0.02562 * 8 6 5 27 27 H 1.07996 * 125.80729 * 359.97166 * 10 9 8 28 28 H 0.97006 * 119.99819 * 179.97438 * 16 15 13 29 29 H 1.08001 * 126.24471 * 359.97438 * 21 9 8 30 30 H 1.08003 * 125.81611 * 180.14458 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3665 -0.0576 1.1039 5 6 4.7050 -0.0266 0.6484 6 6 5.9165 -0.0632 1.4867 7 8 5.8168 -0.1269 2.6973 8 7 7.1351 -0.0262 0.9120 9 6 8.2906 -0.0617 1.7115 10 6 8.3244 -0.1293 3.1160 11 7 9.5762 -0.1485 3.4986 12 7 10.3880 -0.0840 2.3589 13 6 11.7610 -0.0751 2.3438 14 1 12.2911 -0.1180 1.4037 15 6 12.4687 -0.0107 3.5382 16 7 11.8305 -0.0761 4.6838 17 14 14.3280 0.1687 3.5138 18 1 14.6883 1.6044 3.6333 19 1 14.9130 -0.5850 4.6517 20 1 14.8606 -0.3705 2.2367 21 6 9.5719 -0.0316 1.2660 22 6 4.6626 0.0413 -0.7305 23 7 3.3743 0.0607 -1.1147 24 1 3.0622 0.1091 -2.0318 25 1 3.0388 -0.1126 2.1315 26 1 7.2147 0.0249 -0.0534 27 1 7.4640 -0.1625 3.7679 28 1 12.3246 -0.0315 5.5174 29 1 9.8882 0.0235 0.2348 30 1 5.5185 0.0770 -1.3882 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776961544.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:22 Heat of formation + Delta-G solvation = 129.887544 kcal Electronic energy + Delta-G solvation = -18625.672372 eV Core-core repulsion = 15424.373220 eV Total energy + Delta-G solvation = -3201.299152 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.68650 -39.72781 -38.22077 -36.71871 -34.17089 -33.14580 -31.66761 -30.34226 -29.94463 -27.64479 -25.00014 -23.08054 -22.75906 -20.89166 -20.30717 -19.54924 -19.14644 -17.39817 -16.22698 -16.05257 -15.40642 -15.32599 -15.08463 -14.39159 -14.25255 -14.06261 -13.52842 -13.29921 -13.28059 -12.97829 -12.89160 -12.75175 -12.43233 -11.66403 -11.39477 -11.26240 -10.91487 -10.51593 -10.12994 -9.35461 -9.24702 -9.13522 -8.76871 -8.63495 -8.02166 -6.65620 -6.53933 -4.20114 1.09063 1.77489 1.98407 2.85302 2.96585 3.06238 3.11655 3.12659 3.47482 3.54184 3.80199 3.89432 3.97897 4.52005 4.62945 4.73023 4.90533 5.03570 5.10575 5.62365 5.73265 6.21505 6.27434 6.36818 6.52603 6.83036 6.94602 7.00510 7.13727 7.17883 7.28010 7.89131 8.24266 8.32430 8.67822 8.93210 9.41139 9.70546 10.42336 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.071445 B = 0.003143 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.813915 B = 8906.741882 C = 9284.065383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C 0.283 3.717 3 C 0.037 3.963 4 C -0.047 4.047 5 C -0.206 4.206 6 C 0.570 3.430 7 O -0.534 6.534 8 N -0.621 5.621 9 C -0.057 4.057 10 C -0.032 4.032 11 N -0.262 5.262 12 N -0.144 5.144 13 C -0.324 4.324 14 H 0.116 0.884 15 C 0.046 3.954 16 N -0.769 5.769 17 Si 0.934 3.066 18 H -0.271 1.271 19 H -0.276 1.276 20 H -0.264 1.264 21 C -0.084 4.084 22 C 0.076 3.924 23 N -0.522 5.522 24 H 0.424 0.576 25 H 0.161 0.839 26 H 0.394 0.606 27 H 0.177 0.823 28 H 0.274 0.726 29 H 0.145 0.855 30 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.459 0.657 -13.481 16.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.032 4.032 3 C -0.075 4.075 4 C -0.075 4.075 5 C -0.216 4.216 6 C 0.357 3.643 7 O -0.412 6.412 8 N -0.262 5.262 9 C -0.163 4.163 10 C -0.207 4.207 11 N -0.093 5.093 12 N 0.088 4.912 13 C -0.456 4.456 14 H 0.133 0.867 15 C -0.171 4.171 16 N -0.396 5.396 17 Si 0.758 3.242 18 H -0.197 1.197 19 H -0.201 1.201 20 H -0.188 1.188 21 C -0.235 4.235 22 C -0.066 4.066 23 N -0.116 5.116 24 H 0.263 0.737 25 H 0.179 0.821 26 H 0.226 0.774 27 H 0.194 0.806 28 H 0.085 0.915 29 H 0.163 0.837 30 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -10.531 0.559 -11.496 15.600 hybrid contribution 0.638 0.175 -1.841 1.956 sum -9.893 0.734 -13.337 16.622 Atomic orbital electron populations 1.81320 1.11307 1.10682 1.05513 1.24303 0.90818 0.93189 0.94902 1.15150 0.83209 1.21443 0.87653 1.21132 0.90424 0.98101 0.97886 1.19768 0.94188 1.15558 0.92095 1.17141 0.81663 0.78334 0.87180 1.90691 1.86108 1.50475 1.13929 1.42310 1.03868 1.71444 1.08614 1.17234 0.84421 1.23520 0.91098 1.24149 0.96293 1.07747 0.92556 1.78257 0.98965 1.25524 1.06511 1.44542 1.05035 1.39161 1.02429 1.19852 0.76879 1.53415 0.95471 0.86662 1.25635 1.01238 0.95537 0.94663 1.70224 1.36469 1.35202 0.97689 0.85831 0.80706 0.78885 0.78823 1.19678 1.20140 1.18827 1.21248 0.89224 1.19975 0.93058 1.22539 0.86145 1.02136 0.95738 1.41514 1.05668 1.55942 1.08495 0.73739 0.82132 0.77356 0.80606 0.91492 0.83745 0.79578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.94 18.54 41.84 0.78 -4.17 16 2 C 0.28 2.81 15.88 -22.47 -0.36 2.45 16 3 C 0.04 0.32 6.90 -83.98 -0.58 -0.26 16 4 C -0.05 -0.51 10.59 -39.05 -0.41 -0.92 16 5 C -0.21 -2.37 6.13 -105.01 -0.64 -3.02 16 6 C 0.57 9.46 7.78 -12.54 -0.10 9.36 16 7 O -0.53 -11.24 14.07 5.25 0.07 -11.17 16 8 N -0.62 -10.14 5.45 -10.98 -0.06 -10.20 16 9 C -0.06 -1.27 6.90 -83.85 -0.58 -1.85 16 10 C -0.03 -0.82 10.85 -17.03 -0.18 -1.01 16 11 N -0.26 -7.53 10.42 30.80 0.32 -7.21 16 12 N -0.14 -3.88 3.74 -11.41 -0.04 -3.92 16 13 C -0.32 -8.44 10.24 -14.82 -0.15 -8.59 16 14 H 0.12 2.67 7.84 -52.48 -0.41 2.26 16 15 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 16 N -0.77 -21.37 11.84 55.50 0.66 -20.71 16 17 Si 0.93 18.70 29.56 -169.99 -5.02 13.67 16 18 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 19 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 20 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 21 C -0.08 -1.91 11.49 -16.39 -0.19 -2.09 16 22 C 0.08 0.51 11.43 -16.45 -0.19 0.33 16 23 N -0.52 -2.96 6.02 -10.28 -0.06 -3.02 16 24 H 0.42 0.95 8.96 -40.82 -0.37 0.59 16 25 H 0.16 1.75 8.06 -52.48 -0.42 1.32 16 26 H 0.39 4.51 7.73 -40.82 -0.32 4.19 16 27 H 0.18 4.54 5.91 -52.49 -0.31 4.23 16 28 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.15 2.66 8.06 -52.49 -0.42 2.24 16 30 H 0.19 0.57 7.44 -52.48 -0.39 0.18 16 LS Contribution 286.95 15.07 4.32 4.32 Total: -1.00 -35.69 286.95 -4.29 -39.98 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -1.77 Total: 6.93 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -3.48 Total: -4.51 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: 1.59 Total: -49.23 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.07 Total: -11.17 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -35.69 -4.29 -39.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776961544.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.869 kcal (2) G-P(sol) polarization free energy of solvation -35.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds