Wall clock time and date at job start Mon Mar 30 2020 00:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.36362 * 125.84086 * 273.03627 * 3 2 1 5 5 C 1.41423 * 107.01190 * 180.26377 * 4 3 2 6 6 C 1.47368 * 126.46440 * 179.75890 * 5 4 3 7 7 O 1.21635 * 120.00424 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00197 * 180.02562 * 6 5 4 9 9 C 1.40555 * 120.00464 * 180.02562 * 8 6 5 10 10 C 1.40659 * 126.08136 * 359.69611 * 9 8 6 11 11 N 1.30911 * 108.38964 * 179.81455 * 10 9 8 12 12 N 1.40076 * 108.40628 * 0.44041 * 11 10 9 13 13 C 1.37311 * 126.06773 * 179.69771 * 12 11 10 14 14 H 1.08006 * 120.00218 * 174.16060 * 13 12 11 15 15 C 1.38989 * 119.99997 * 354.15339 * 13 12 11 16 16 N 1.31293 * 120.00025 * 5.94224 * 15 13 12 17 17 Si 1.86801 * 119.99879 * 185.93698 * 15 13 12 18 18 H 1.48505 * 109.46840 * 94.98196 * 17 15 13 19 19 H 1.48500 * 109.47175 * 214.98386 * 17 15 13 20 20 H 1.48504 * 109.47483 * 334.98841 * 17 15 13 21 21 C 1.35686 * 126.08558 * 179.97438 * 9 8 6 22 22 C 1.38122 * 107.06775 * 359.61768 * 5 4 3 23 23 N 1.34452 * 108.38464 * 0.38394 * 22 5 4 24 24 H 0.96996 * 125.39394 * 179.77076 * 23 22 5 25 25 H 1.08003 * 126.49269 * 0.02562 * 4 3 2 26 26 H 0.97006 * 119.99668 * 0.02562 * 8 6 5 27 27 H 1.07996 * 125.80729 * 359.97166 * 10 9 8 28 28 H 0.97006 * 119.99819 * 179.97438 * 16 15 13 29 29 H 1.08001 * 126.24471 * 359.97438 * 21 9 8 30 30 H 1.08003 * 125.81611 * 180.14458 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3665 -0.0576 1.1039 5 6 4.7050 -0.0266 0.6484 6 6 5.9165 -0.0632 1.4867 7 8 5.8168 -0.1269 2.6973 8 7 7.1351 -0.0262 0.9120 9 6 8.2906 -0.0617 1.7115 10 6 8.3244 -0.1293 3.1160 11 7 9.5762 -0.1485 3.4986 12 7 10.3880 -0.0840 2.3589 13 6 11.7610 -0.0751 2.3438 14 1 12.2911 -0.1180 1.4037 15 6 12.4687 -0.0107 3.5382 16 7 11.8305 -0.0761 4.6838 17 14 14.3280 0.1687 3.5138 18 1 14.6883 1.6044 3.6333 19 1 14.9130 -0.5850 4.6517 20 1 14.8606 -0.3705 2.2367 21 6 9.5719 -0.0316 1.2660 22 6 4.6626 0.0413 -0.7305 23 7 3.3743 0.0607 -1.1147 24 1 3.0622 0.1091 -2.0318 25 1 3.0388 -0.1126 2.1315 26 1 7.2147 0.0249 -0.0534 27 1 7.4640 -0.1625 3.7679 28 1 12.3246 -0.0315 5.5174 29 1 9.8882 0.0235 0.2348 30 1 5.5185 0.0770 -1.3882 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776961544.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:22 Heat of formation + Delta-G solvation = 102.887800 kcal Electronic energy + Delta-G solvation = -18626.843169 eV Core-core repulsion = 15424.373220 eV Total energy + Delta-G solvation = -3202.469949 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.45361 -41.47772 -39.69987 -37.58060 -35.81068 -34.87823 -32.55385 -32.08062 -30.96036 -29.31581 -26.80636 -24.32080 -23.49307 -22.71909 -21.24513 -20.97646 -20.52286 -19.08633 -17.44992 -17.15501 -17.08499 -16.45160 -16.22760 -15.67764 -15.58731 -15.15600 -14.88091 -14.83014 -14.67326 -14.13366 -13.99256 -13.66464 -13.44254 -13.27988 -13.12968 -12.90668 -12.73789 -12.03031 -11.74430 -10.93973 -10.76139 -10.64947 -10.16148 -10.00579 -9.38265 -8.41398 -8.38407 -6.16375 0.38916 0.80812 1.25343 1.37154 1.44046 1.61793 1.83159 2.10947 2.15301 2.24698 2.41332 2.42954 2.89634 2.97794 3.15757 3.17696 3.92967 4.19009 4.30005 4.54375 4.66693 4.77900 4.97436 5.09254 5.22343 5.38143 5.45032 5.59949 5.61748 6.04608 6.28257 6.42081 6.46516 6.82679 6.96247 7.54559 7.61379 7.79330 8.59013 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.071445 B = 0.003143 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.813915 B = 8906.741882 C = 9284.065383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.306 3.694 3 C 0.041 3.959 4 C -0.061 4.061 5 C -0.247 4.247 6 C 0.571 3.429 7 O -0.589 6.589 8 N -0.609 5.609 9 C -0.039 4.039 10 C -0.063 4.063 11 N -0.314 5.314 12 N -0.173 5.173 13 C -0.353 4.353 14 H 0.142 0.858 15 C -0.008 4.008 16 N -0.828 5.828 17 Si 1.018 2.982 18 H -0.268 1.268 19 H -0.279 1.279 20 H -0.241 1.241 21 C -0.076 4.076 22 C 0.132 3.868 23 N -0.496 5.496 24 H 0.447 0.553 25 H 0.146 0.854 26 H 0.421 0.579 27 H 0.165 0.835 28 H 0.274 0.726 29 H 0.193 0.807 30 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.839 0.915 -17.782 19.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.009 4.009 3 C -0.071 4.071 4 C -0.089 4.089 5 C -0.257 4.257 6 C 0.361 3.639 7 O -0.470 6.470 8 N -0.254 5.254 9 C -0.145 4.145 10 C -0.238 4.238 11 N -0.146 5.146 12 N 0.058 4.942 13 C -0.484 4.484 14 H 0.160 0.840 15 C -0.219 4.219 16 N -0.456 5.456 17 Si 0.837 3.163 18 H -0.193 1.193 19 H -0.205 1.205 20 H -0.164 1.164 21 C -0.227 4.227 22 C -0.013 4.013 23 N -0.091 5.091 24 H 0.290 0.710 25 H 0.164 0.836 26 H 0.259 0.741 27 H 0.182 0.818 28 H 0.084 0.916 29 H 0.210 0.790 30 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -9.974 0.819 -15.902 18.788 hybrid contribution 0.250 0.090 -0.618 0.673 sum -9.724 0.908 -16.520 19.191 Atomic orbital electron populations 1.81349 1.12449 1.12116 1.06801 1.24314 0.90802 0.92084 0.93707 1.14793 0.82514 1.21738 0.88054 1.21106 0.90979 0.98678 0.98187 1.19268 0.91869 1.20684 0.93874 1.17886 0.82785 0.76197 0.87035 1.90671 1.86934 1.52634 1.16796 1.42161 1.02113 1.71589 1.09564 1.17294 0.86407 1.20659 0.90128 1.24195 0.95442 1.09359 0.94829 1.78149 1.00292 1.27302 1.08903 1.44833 1.05708 1.40750 1.02896 1.20591 0.77075 1.53827 0.96894 0.84038 1.26867 1.06836 0.94362 0.93877 1.70417 1.38848 1.37690 0.98627 0.84599 0.73487 0.78750 0.79488 1.19328 1.20478 1.16378 1.22055 0.88734 1.17597 0.94267 1.23103 0.87466 0.96662 0.94063 1.41506 1.04904 1.53773 1.08954 0.70966 0.83633 0.74052 0.81814 0.91597 0.78962 0.74559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.39 18.54 19.01 0.35 -10.03 16 2 C 0.31 5.55 15.88 88.33 1.40 6.96 16 3 C 0.04 0.60 6.90 39.03 0.27 0.87 16 4 C -0.06 -1.26 10.59 22.62 0.24 -1.02 16 5 C -0.25 -5.11 6.13 -20.12 -0.12 -5.23 16 6 C 0.57 18.50 7.78 86.65 0.67 19.17 16 7 O -0.59 -25.83 14.07 -4.14 -0.06 -25.88 16 8 N -0.61 -18.51 5.45 -306.90 -1.67 -20.18 16 9 C -0.04 -1.69 6.90 37.74 0.26 -1.42 16 10 C -0.06 -3.40 10.85 85.42 0.93 -2.47 16 11 N -0.31 -18.92 10.42 -56.46 -0.59 -19.51 16 12 N -0.17 -9.38 3.74 -190.00 -0.71 -10.09 16 13 C -0.35 -18.33 10.24 84.02 0.86 -17.47 16 14 H 0.14 6.28 7.84 -2.91 -0.02 6.26 16 15 C -0.01 -0.43 5.50 84.95 0.47 0.04 16 16 N -0.83 -47.96 11.84 21.66 0.26 -47.71 16 17 Si 1.02 38.25 29.56 68.60 2.03 40.28 16 18 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 19 H -0.28 -10.49 7.11 99.48 0.71 -9.79 16 20 H -0.24 -8.05 7.11 99.48 0.71 -7.34 16 21 C -0.08 -3.33 11.49 83.37 0.96 -2.37 16 22 C 0.13 1.07 11.43 84.26 0.96 2.03 16 23 N -0.50 -3.18 6.02 -186.45 -1.12 -4.30 16 24 H 0.45 -0.60 8.96 -92.71 -0.83 -1.43 16 25 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 26 H 0.42 7.67 7.73 -92.70 -0.72 6.96 16 27 H 0.16 9.10 5.91 -2.91 -0.02 9.08 16 28 H 0.27 14.66 8.31 -92.70 -0.77 13.89 16 29 H 0.19 6.25 8.06 -2.91 -0.02 6.23 16 30 H 0.24 -0.46 7.44 -2.91 -0.02 -0.48 16 Total: -1.00 -85.85 286.95 5.08 -80.77 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -0.31 Total: 17.58 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 6.90 Total: -0.92 kcal Atomic # 7 Polarization: -108.34 SS G_CDS: -3.49 Total: -111.83 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.06 Total: -25.88 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -85.85 5.08 -80.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776961544.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.662 kcal (2) G-P(sol) polarization free energy of solvation -85.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds