Wall clock time and date at job start Mon Mar 30 2020 01:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00073 * 2 1 4 4 H 1.48506 * 109.47187 * 239.99781 * 3 2 1 5 5 H 1.48505 * 109.46936 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47296 * 119.99846 * 3 2 1 7 7 C 1.37887 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99857 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99694 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46923 * 179.97438 * 9 7 2 11 11 O 1.45196 * 109.47161 * 180.02562 * 10 9 7 12 12 C 1.34780 * 117.00126 * 179.97438 * 11 10 9 13 13 O 1.21518 * 120.00026 * 359.97438 * 12 11 10 14 14 C 1.47299 * 120.00219 * 179.97438 * 12 11 10 15 15 C 1.39023 * 121.17715 * 0.25085 * 14 12 11 16 16 N 1.32174 * 121.31059 * 180.29438 * 15 14 12 17 17 C 1.31207 * 123.70076 * 359.71913 * 16 15 14 18 18 C 1.40383 * 120.93019 * 359.97438 * 17 16 15 19 19 C 1.40398 * 122.14438 * 179.97438 * 18 17 16 20 20 C 1.36232 * 119.48649 * 180.02562 * 19 18 17 21 21 C 1.39285 * 121.10218 * 0.02562 * 20 19 18 22 22 C 1.36441 * 120.94943 * 0.02562 * 21 20 19 23 23 C 1.39675 * 119.43869 * 359.97438 * 22 21 20 24 24 H 0.96994 * 120.00302 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47472 * 59.99499 * 9 7 2 26 26 H 1.09003 * 109.47165 * 299.99533 * 9 7 2 27 27 H 1.08997 * 109.47437 * 59.99501 * 10 9 7 28 28 H 1.09003 * 109.46838 * 299.99757 * 10 9 7 29 29 H 1.08011 * 119.34598 * 359.97438 * 15 14 12 30 30 H 1.08004 * 119.53291 * 180.02562 * 17 16 15 31 31 H 1.08003 * 120.25225 * 0.04497 * 19 18 17 32 32 H 1.08002 * 119.44542 * 179.97438 * 20 19 18 33 33 H 1.08004 * 119.52128 * 180.02562 * 21 20 19 34 34 H 1.08004 * 120.28517 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5194 -4.9195 -0.0001 12 6 2.2534 -6.0499 -0.0007 13 8 3.4669 -5.9863 -0.0012 14 6 1.5847 -7.3624 -0.0008 15 6 0.1982 -7.4637 -0.0054 16 7 -0.4046 -8.6399 0.0003 17 6 0.2348 -9.7856 0.0053 18 6 1.6380 -9.8289 0.0042 19 6 2.3480 -11.0400 0.0099 20 6 3.7102 -11.0188 0.0091 21 6 4.4110 -9.8151 0.0032 22 6 3.7528 -8.6200 -0.0014 23 6 2.3561 -8.6054 -0.0007 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8721 -3.6043 0.8904 28 1 2.8720 -3.6043 -0.8895 29 1 -0.3983 -6.5632 -0.0086 30 1 -0.3263 -10.7085 0.0094 31 1 1.8184 -11.9813 0.0147 32 1 4.2557 -11.9509 0.0139 33 1 5.4910 -9.8281 0.0023 34 1 4.3070 -7.6929 -0.0056 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783420116.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:59 Heat of formation + Delta-G solvation = -38.519403 kcal Electronic energy + Delta-G solvation = -19156.341472 eV Core-core repulsion = 16018.987239 eV Total energy + Delta-G solvation = -3137.354233 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.02864 -39.59195 -37.56194 -36.20122 -33.39966 -32.96670 -31.39905 -30.57420 -29.74438 -25.78760 -24.63105 -23.68404 -23.04014 -21.19605 -20.72921 -18.39601 -17.67415 -17.41060 -16.49427 -16.07866 -16.02216 -15.85136 -14.95434 -14.57687 -14.40296 -14.19462 -13.84293 -13.24578 -12.93534 -12.87127 -12.38180 -12.36368 -12.11733 -11.69840 -11.29552 -11.10921 -10.77766 -10.72548 -10.27879 -10.27391 -9.74892 -9.69902 -9.53096 -9.32601 -9.32365 -8.45696 -8.35431 -6.11649 -4.16385 -0.17329 0.67584 1.42675 2.60129 2.97152 3.01969 3.29411 3.33608 3.36840 3.87488 4.13108 4.32081 4.37160 4.44914 4.52089 4.63425 4.87002 5.00052 5.10288 5.24884 5.36604 5.47784 5.52124 5.75208 5.88160 6.02016 6.04971 6.16067 6.24884 6.34208 6.58438 6.59268 6.93204 7.52697 7.59673 7.68098 7.84073 8.09370 8.21924 8.88823 9.48061 10.99799 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.037368 B = 0.003464 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.116104 B = 8080.701161 C = 8809.362832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.076 3.924 11 O -0.350 6.350 12 C 0.512 3.488 13 O -0.511 6.511 14 C -0.166 4.166 15 C 0.152 3.848 16 N -0.500 5.500 17 C 0.181 3.819 18 C -0.127 4.127 19 C -0.086 4.086 20 C -0.123 4.123 21 C -0.095 4.095 22 C -0.116 4.116 23 C 0.016 3.984 24 H 0.264 0.736 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.176 0.824 30 H 0.167 0.833 31 H 0.135 0.865 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.843 -23.210 0.011 23.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.004 3.996 11 O -0.266 6.266 12 C 0.357 3.643 13 O -0.403 6.403 14 C -0.169 4.169 15 C 0.009 3.991 16 N -0.207 5.207 17 C 0.009 3.991 18 C -0.129 4.129 19 C -0.106 4.106 20 C -0.141 4.141 21 C -0.114 4.114 22 C -0.133 4.133 23 C 0.011 3.989 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.193 0.807 30 H 0.184 0.816 31 H 0.153 0.847 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.114 -22.839 0.011 23.051 hybrid contribution 1.496 0.980 -0.002 1.789 sum 4.610 -21.859 0.009 22.340 Atomic orbital electron populations 1.69956 1.06094 1.27165 1.49552 1.24981 0.94919 0.99386 0.94812 0.86524 0.79484 0.82455 0.78788 1.20057 1.21103 1.20051 1.20927 0.93148 0.90076 1.52495 0.92278 1.19180 0.94186 0.88902 0.98988 1.23723 0.96482 0.78226 1.01155 1.86586 1.41904 1.15560 1.82525 1.20596 0.85501 0.85042 0.73185 1.90655 1.14986 1.87835 1.46803 1.21162 0.94895 0.90677 1.10201 1.23186 0.90904 0.95988 0.89066 1.67252 1.41565 0.98190 1.13696 1.23396 0.90093 0.96664 0.88910 1.18992 0.95194 0.93621 1.05062 1.20956 0.94461 0.96475 0.98677 1.20985 0.94425 0.98445 1.00225 1.21186 1.00669 0.92156 0.97372 1.21820 0.93048 1.00727 0.97705 1.18901 0.93957 0.90519 0.95535 0.92603 0.95256 0.95246 0.92066 0.92075 0.80687 0.81556 0.84676 0.85478 0.85300 0.81828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.79 9.11 -34.44 -0.31 -15.10 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 10 C 0.08 1.68 5.42 37.16 0.20 1.88 16 11 O -0.35 -6.98 9.53 -40.71 -0.39 -7.37 16 12 C 0.51 9.32 7.90 34.41 0.27 9.59 16 13 O -0.51 -9.92 13.53 -19.28 -0.26 -10.18 16 14 C -0.17 -2.56 6.06 -102.68 -0.62 -3.18 16 15 C 0.15 2.16 10.79 -17.11 -0.18 1.97 16 16 N -0.50 -6.46 10.22 -12.56 -0.13 -6.58 16 17 C 0.18 1.83 11.00 -17.01 -0.19 1.65 16 18 C -0.13 -1.38 5.74 -106.89 -0.61 -2.00 16 19 C -0.09 -0.69 9.82 -39.49 -0.39 -1.08 16 20 C -0.12 -0.98 9.94 -39.91 -0.40 -1.38 16 21 C -0.09 -0.92 9.96 -39.84 -0.40 -1.32 16 22 C -0.12 -1.50 9.32 -39.69 -0.37 -1.87 16 23 C 0.02 0.22 5.91 -104.74 -0.62 -0.40 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 29 H 0.18 2.39 7.63 -52.48 -0.40 1.99 16 30 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 31 H 0.14 0.63 8.06 -52.48 -0.42 0.20 16 32 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 34 H 0.16 2.40 5.24 -52.48 -0.28 2.13 16 LS Contribution 302.91 15.07 4.56 4.56 Total: -1.00 -31.81 302.91 -7.96 -39.77 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -3.60 Total: -1.86 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -3.87 Total: -9.11 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.61 Total: -32.14 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.65 Total: -17.55 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.81 -7.96 -39.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783420116.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.251 kcal (2) G-P(sol) polarization free energy of solvation -31.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds