Wall clock time and date at job start Mon Mar 30 2020 01:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00073 * 2 1 4 4 H 1.48506 * 109.47187 * 239.99781 * 3 2 1 5 5 H 1.48505 * 109.46936 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47296 * 119.99846 * 3 2 1 7 7 C 1.37887 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99857 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99694 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46923 * 179.97438 * 9 7 2 11 11 O 1.45196 * 109.47161 * 180.02562 * 10 9 7 12 12 C 1.34780 * 117.00126 * 179.97438 * 11 10 9 13 13 O 1.21518 * 120.00026 * 359.97438 * 12 11 10 14 14 C 1.47299 * 120.00219 * 179.97438 * 12 11 10 15 15 C 1.39023 * 121.17715 * 0.25085 * 14 12 11 16 16 N 1.32174 * 121.31059 * 180.29438 * 15 14 12 17 17 C 1.31207 * 123.70076 * 359.71913 * 16 15 14 18 18 C 1.40383 * 120.93019 * 359.97438 * 17 16 15 19 19 C 1.40398 * 122.14438 * 179.97438 * 18 17 16 20 20 C 1.36232 * 119.48649 * 180.02562 * 19 18 17 21 21 C 1.39285 * 121.10218 * 0.02562 * 20 19 18 22 22 C 1.36441 * 120.94943 * 0.02562 * 21 20 19 23 23 C 1.39675 * 119.43869 * 359.97438 * 22 21 20 24 24 H 0.96994 * 120.00302 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47472 * 59.99499 * 9 7 2 26 26 H 1.09003 * 109.47165 * 299.99533 * 9 7 2 27 27 H 1.08997 * 109.47437 * 59.99501 * 10 9 7 28 28 H 1.09003 * 109.46838 * 299.99757 * 10 9 7 29 29 H 1.08011 * 119.34598 * 359.97438 * 15 14 12 30 30 H 1.08004 * 119.53291 * 180.02562 * 17 16 15 31 31 H 1.08003 * 120.25225 * 0.04497 * 19 18 17 32 32 H 1.08002 * 119.44542 * 179.97438 * 20 19 18 33 33 H 1.08004 * 119.52128 * 180.02562 * 21 20 19 34 34 H 1.08004 * 120.28517 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5194 -4.9195 -0.0001 12 6 2.2534 -6.0499 -0.0007 13 8 3.4669 -5.9863 -0.0012 14 6 1.5847 -7.3624 -0.0008 15 6 0.1982 -7.4637 -0.0054 16 7 -0.4046 -8.6399 0.0003 17 6 0.2348 -9.7856 0.0053 18 6 1.6380 -9.8289 0.0042 19 6 2.3480 -11.0400 0.0099 20 6 3.7102 -11.0188 0.0091 21 6 4.4110 -9.8151 0.0032 22 6 3.7528 -8.6200 -0.0014 23 6 2.3561 -8.6054 -0.0007 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8721 -3.6043 0.8904 28 1 2.8720 -3.6043 -0.8895 29 1 -0.3983 -6.5632 -0.0086 30 1 -0.3263 -10.7085 0.0094 31 1 1.8184 -11.9813 0.0147 32 1 4.2557 -11.9509 0.0139 33 1 5.4910 -9.8281 0.0023 34 1 4.3070 -7.6929 -0.0056 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783420116.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:59 Heat of formation + Delta-G solvation = -56.954860 kcal Electronic energy + Delta-G solvation = -19157.140893 eV Core-core repulsion = 16018.987239 eV Total energy + Delta-G solvation = -3138.153654 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.07001 -40.93442 -38.42341 -37.75663 -35.48181 -33.96675 -32.41029 -32.22248 -30.83542 -27.40647 -26.06089 -24.56634 -24.06976 -22.94184 -22.14878 -19.53888 -18.78679 -18.45798 -18.24802 -17.61449 -17.53929 -16.86722 -16.53028 -15.78444 -15.52671 -15.20574 -14.85241 -14.70276 -14.43935 -14.29142 -13.73487 -13.22078 -13.19970 -13.12462 -12.97336 -12.66680 -12.61574 -12.51277 -11.81517 -11.54932 -11.51910 -11.31089 -11.21166 -10.62780 -10.58986 -10.13878 -9.24661 -8.28674 -6.42464 -1.10927 -0.18325 0.52886 1.39050 1.43056 1.43831 1.50085 1.57943 2.06545 2.38525 2.97990 3.05616 3.20844 3.41761 3.57303 3.63304 3.82366 3.93326 4.17491 4.17592 4.25159 4.29331 4.52667 4.55505 4.65074 4.69301 5.01069 5.02562 5.21739 5.36999 5.39824 5.42919 5.45580 5.58112 5.71137 5.87718 6.03562 6.56912 6.70749 6.77054 7.27309 8.83858 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.037368 B = 0.003464 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.116104 B = 8080.701161 C = 8809.362832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.975 3.025 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.553 4.553 8 H 0.066 0.934 9 C 0.031 3.969 10 C 0.092 3.908 11 O -0.359 6.359 12 C 0.510 3.490 13 O -0.531 6.531 14 C -0.203 4.203 15 C 0.159 3.841 16 N -0.526 5.526 17 C 0.207 3.793 18 C -0.142 4.142 19 C -0.063 4.063 20 C -0.125 4.125 21 C -0.077 4.077 22 C -0.159 4.159 23 C -0.002 4.002 24 H 0.269 0.731 25 H 0.007 0.993 26 H 0.007 0.993 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.167 0.833 30 H 0.219 0.781 31 H 0.184 0.816 32 H 0.168 0.832 33 H 0.150 0.850 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.607 -26.454 0.023 26.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.590 4.590 8 H 0.084 0.916 9 C -0.006 4.006 10 C 0.019 3.981 11 O -0.275 6.275 12 C 0.357 3.643 13 O -0.423 6.423 14 C -0.207 4.207 15 C 0.015 3.985 16 N -0.234 5.234 17 C 0.037 3.963 18 C -0.144 4.144 19 C -0.083 4.083 20 C -0.142 4.142 21 C -0.096 4.096 22 C -0.177 4.177 23 C -0.006 4.006 24 H 0.077 0.923 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.184 0.816 30 H 0.236 0.764 31 H 0.202 0.798 32 H 0.186 0.814 33 H 0.168 0.832 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.887 -26.107 0.023 26.395 hybrid contribution 1.266 1.700 -0.005 2.120 sum 5.153 -24.406 0.017 24.945 Atomic orbital electron populations 1.70086 1.07852 1.28423 1.50191 1.25982 0.95854 1.03459 0.93977 0.85358 0.78182 0.77317 0.79342 1.19014 1.20409 1.19003 1.21339 0.93739 0.91158 1.52811 0.91603 1.18984 0.94321 0.90482 0.96785 1.23237 0.95177 0.78472 1.01193 1.86565 1.42089 1.15591 1.83266 1.21188 0.85489 0.85320 0.72335 1.90645 1.15694 1.88032 1.47935 1.21025 0.95507 0.89690 1.14473 1.23113 0.90356 0.96809 0.88173 1.67354 1.41684 0.98433 1.15939 1.24277 0.90247 0.97309 0.84499 1.19323 0.95696 0.93645 1.05730 1.21529 0.94661 0.96862 0.95202 1.21453 0.94801 0.98966 0.98994 1.21549 1.01954 0.91789 0.94290 1.21645 0.93100 1.01137 1.01838 1.19112 0.94427 0.90914 0.96167 0.92266 0.97438 0.97430 0.91966 0.91978 0.81597 0.76446 0.79850 0.81418 0.83243 0.84796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.22 13.29 21.45 0.28 -55.93 16 2 C 0.01 0.37 5.46 84.66 0.46 0.83 16 3 Si 0.97 44.09 29.54 68.60 2.03 46.11 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.55 -31.88 9.11 25.60 0.23 -31.65 16 8 H 0.07 3.62 7.74 -2.91 -0.02 3.59 16 9 C 0.03 1.73 5.35 29.85 0.16 1.89 16 10 C 0.09 4.31 5.42 71.98 0.39 4.70 16 11 O -0.36 -15.46 9.53 -56.92 -0.54 -16.00 16 12 C 0.51 20.08 7.90 70.21 0.55 20.63 16 13 O -0.53 -22.24 13.53 19.78 0.27 -21.97 16 14 C -0.20 -6.66 6.06 -18.61 -0.11 -6.78 16 15 C 0.16 4.72 10.79 84.83 0.91 5.64 16 16 N -0.53 -13.08 10.22 -193.66 -1.98 -15.06 16 17 C 0.21 3.51 11.00 85.31 0.94 4.45 16 18 C -0.14 -2.70 5.74 -21.33 -0.12 -2.82 16 19 C -0.06 -0.68 9.82 22.33 0.22 -0.46 16 20 C -0.12 -1.38 9.94 22.05 0.22 -1.16 16 21 C -0.08 -1.33 9.96 22.10 0.22 -1.11 16 22 C -0.16 -4.23 9.32 22.20 0.21 -4.03 16 23 C 0.00 -0.05 5.91 -19.94 -0.12 -0.17 16 24 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 25 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 28 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 29 H 0.17 4.99 7.63 -2.90 -0.02 4.97 16 30 H 0.22 1.30 8.06 -2.91 -0.02 1.28 16 31 H 0.18 0.25 8.06 -2.91 -0.02 0.23 16 32 H 0.17 0.59 8.06 -2.91 -0.02 0.57 16 33 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 34 H 0.13 4.30 5.24 -2.91 -0.02 4.28 16 Total: -1.00 -73.69 302.91 5.34 -68.35 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: 1.12 Total: 4.52 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 4.17 Total: -10.03 kcal Atomic # 7 Polarization: -69.30 SS G_CDS: -1.69 Total: -70.99 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -0.27 Total: -37.97 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -73.69 5.34 -68.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783420116.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.397 kcal (2) G-P(sol) polarization free energy of solvation -73.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds