Wall clock time and date at job start Mon Mar 30 2020 00:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99968 * 2 1 4 4 H 1.48493 * 109.47168 * 269.99788 * 3 2 1 5 5 H 1.48495 * 109.46980 * 30.00108 * 3 2 1 6 6 H 1.48506 * 109.46959 * 149.99758 * 3 2 1 7 7 C 1.37875 * 120.00169 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00146 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00155 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.47436 * 179.97438 * 9 7 2 11 11 C 1.34771 * 120.00507 * 179.97438 * 10 9 7 12 12 O 1.21589 * 119.99967 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00578 * 179.97438 * 11 10 9 14 14 N 1.40102 * 119.99802 * 0.02562 * 13 11 10 15 15 C 1.40016 * 120.00143 * 174.69012 * 14 13 11 16 16 C 1.38998 * 120.08458 * 144.65617 * 15 14 13 17 17 F 1.35094 * 120.04203 * 359.70001 * 16 15 14 18 18 C 1.38328 * 119.91431 * 179.97438 * 16 15 14 19 19 C 1.38279 * 120.08797 * 359.97438 * 18 16 15 20 20 C 1.38277 * 120.16833 * 0.02562 * 19 18 16 21 21 C 1.38332 * 120.08671 * 359.97438 * 20 19 18 22 22 F 1.35098 * 120.04475 * 180.02562 * 21 20 19 23 23 H 0.96998 * 119.99842 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47310 * 59.99999 * 9 7 2 25 25 H 1.08996 * 109.47532 * 299.99987 * 9 7 2 26 26 H 0.97006 * 119.99496 * 0.02562 * 10 9 7 27 27 H 0.97003 * 120.00573 * 180.02562 * 13 11 10 28 28 H 0.97000 * 120.00099 * 354.69031 * 14 13 11 29 29 H 1.07996 * 119.95798 * 179.97438 * 18 16 15 30 30 H 1.07997 * 119.91732 * 180.02562 * 19 18 16 31 31 H 1.08003 * 119.95612 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5752 -0.0001 11 6 5.3250 -2.8215 -0.0001 12 8 6.1151 -1.8973 0.0004 13 7 5.7743 -4.0921 0.0003 14 7 4.8639 -5.1570 0.0002 15 6 5.3267 -6.4738 -0.1116 16 6 4.6824 -7.4991 0.5708 17 9 3.6118 -7.2259 1.3481 18 6 5.1423 -8.7987 0.4574 19 6 6.2412 -9.0787 -0.3339 20 6 6.8848 -8.0614 -1.0143 21 6 6.4310 -6.7592 -0.9060 22 9 7.0601 -5.7660 -1.5715 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.6808 0.8905 25 1 3.8753 -0.6796 -0.8894 26 1 3.3695 -3.3125 -0.0009 27 1 6.7280 -4.2694 0.0006 28 1 3.9129 -4.9822 0.0776 29 1 4.6425 -9.5958 0.9876 30 1 6.5977 -10.0944 -0.4208 31 1 7.7431 -8.2839 -1.6310 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787366523.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:34 Heat of formation + Delta-G solvation = -68.509240 kcal Electronic energy + Delta-G solvation = -20075.622570 eV Core-core repulsion = 16415.031101 eV Total energy + Delta-G solvation = -3660.591468 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.00920 -49.94157 -41.26086 -39.85514 -37.39150 -36.31132 -34.43504 -33.07437 -31.25017 -29.88188 -28.96063 -24.67809 -23.87160 -23.66253 -22.07985 -20.56112 -19.58020 -18.82897 -18.68890 -17.99116 -17.24796 -17.02403 -16.68847 -16.58780 -16.54711 -16.27856 -16.12475 -15.72635 -15.17454 -15.08654 -14.55711 -14.43194 -13.80103 -13.51562 -13.09938 -12.85806 -12.74448 -12.70471 -12.44403 -11.94703 -11.71686 -11.62804 -10.94507 -10.55224 -10.05359 -9.76825 -8.52390 -8.41786 -6.49791 -0.01645 0.00476 0.89082 1.33524 1.35313 1.48422 1.93870 2.08291 2.27731 2.44030 2.79740 2.93706 3.48616 3.59908 3.85909 3.87622 4.27146 4.54356 4.71811 4.80432 4.99073 5.02561 5.14373 5.17073 5.18553 5.28934 5.34838 5.73103 5.89226 6.20750 6.29194 6.51968 7.04665 7.17450 7.38282 8.72880 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.029403 B = 0.004305 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.045299 B = 6502.844959 C = 7223.159550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.029 3.971 3 Si 0.939 3.061 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.259 1.259 7 C -0.550 4.550 8 H 0.058 0.942 9 C 0.249 3.751 10 N -0.717 5.717 11 C 0.705 3.295 12 O -0.624 6.624 13 N -0.520 5.520 14 N -0.559 5.559 15 C 0.116 3.884 16 C 0.061 3.939 17 F -0.141 7.141 18 C -0.116 4.116 19 C -0.084 4.084 20 C -0.118 4.118 21 C 0.047 3.953 22 F -0.144 7.144 23 H 0.274 0.726 24 H 0.017 0.983 25 H 0.015 0.985 26 H 0.399 0.601 27 H 0.434 0.566 28 H 0.429 0.571 29 H 0.172 0.828 30 H 0.185 0.815 31 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.199 -22.547 -0.575 26.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.171 4.171 3 Si 0.762 3.238 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.183 1.183 7 C -0.588 4.588 8 H 0.076 0.924 9 C 0.125 3.875 10 N -0.371 5.371 11 C 0.404 3.596 12 O -0.503 6.503 13 N -0.274 5.274 14 N -0.295 5.295 15 C 0.015 3.985 16 C 0.037 3.963 17 F -0.120 7.120 18 C -0.135 4.135 19 C -0.103 4.103 20 C -0.137 4.137 21 C 0.024 3.976 22 F -0.123 7.123 23 H 0.083 0.917 24 H 0.035 0.965 25 H 0.033 0.967 26 H 0.234 0.766 27 H 0.280 0.720 28 H 0.272 0.728 29 H 0.190 0.810 30 H 0.202 0.798 31 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 13.546 -21.469 -0.568 25.391 hybrid contribution -0.548 1.084 0.029 1.215 sum 12.998 -20.384 -0.539 24.182 Atomic orbital electron populations 1.69974 1.07703 1.28739 1.50365 1.25570 0.95549 1.02660 0.93356 0.85837 0.79289 0.79112 0.79545 1.18899 1.19682 1.18325 1.21227 0.89691 0.94680 1.53205 0.92409 1.19074 0.93321 0.79017 0.96090 1.45132 1.04154 1.10364 1.77495 1.15829 0.83446 0.81722 0.78569 1.90927 1.56103 1.41676 1.61605 1.44232 1.05573 0.96672 1.80879 1.42952 1.04079 0.95781 1.86723 1.17886 0.98564 0.83031 0.99049 1.17456 0.89720 0.93949 0.95196 1.91506 1.53253 1.94705 1.72553 1.21488 0.98027 0.93542 1.00422 1.21249 0.93580 1.00947 0.94532 1.21480 1.01997 0.88980 1.01219 1.17593 0.96379 0.86934 0.96733 1.91471 1.81191 1.60924 1.78667 0.91725 0.96513 0.96691 0.76554 0.72038 0.72778 0.81032 0.79805 0.81410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.78 13.96 21.45 0.30 -55.48 16 2 C 0.03 1.67 5.47 84.65 0.46 2.13 16 3 Si 0.94 44.35 27.47 68.60 1.88 46.23 16 4 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 6 H -0.26 -12.14 6.54 99.48 0.65 -11.49 16 7 C -0.55 -30.88 9.83 25.60 0.25 -30.63 16 8 H 0.06 3.41 7.84 -2.91 -0.02 3.38 16 9 C 0.25 12.58 4.50 85.63 0.38 12.96 16 10 N -0.72 -30.71 5.51 -482.31 -2.66 -33.36 16 11 C 0.71 29.17 8.68 179.06 1.55 30.73 16 12 O -0.62 -30.27 17.18 -4.00 -0.07 -30.33 16 13 N -0.52 -16.84 5.62 -184.75 -1.04 -17.88 16 14 N -0.56 -15.56 6.21 -51.05 -0.32 -15.87 16 15 C 0.12 2.65 6.54 38.20 0.25 2.90 16 16 C 0.06 1.18 7.31 22.47 0.16 1.35 16 17 F -0.14 -3.28 16.97 44.97 0.76 -2.51 16 18 C -0.12 -1.30 10.02 22.30 0.22 -1.08 16 19 C -0.08 -0.64 10.04 22.29 0.22 -0.41 16 20 C -0.12 -1.39 10.02 22.30 0.22 -1.17 16 21 C 0.05 0.96 7.09 22.47 0.16 1.11 16 22 F -0.14 -3.54 15.10 44.97 0.68 -2.87 16 23 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 24 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 25 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 26 H 0.40 15.30 6.25 -92.70 -0.58 14.72 16 27 H 0.43 12.94 7.28 -213.32 -1.55 11.39 16 28 H 0.43 11.93 6.71 -213.32 -1.43 10.50 16 29 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 30 H 0.18 -0.05 8.06 -2.91 -0.02 -0.08 16 31 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 Total: -1.00 -71.51 283.58 1.04 -70.47 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: -2.40 Total: 23.72 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: 3.90 Total: 17.89 kcal Atomic # 7 Polarization: -118.89 SS G_CDS: -3.71 Total: -122.60 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.07 Total: -30.33 kcal Atomic # 9 Polarization: -6.82 SS G_CDS: 1.44 Total: -5.38 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.88 Total: 46.23 kcal Total: -71.51 1.04 -70.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787366523.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.958 kcal (2) G-P(sol) polarization free energy of solvation -71.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds