Wall clock time and date at job start Mon Mar 30 2020 01:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47430 * 2 1 4 4 N 1.39922 * 125.74963 * 269.99821 * 3 2 1 5 5 C 1.30418 * 108.95789 * 179.73785 * 4 3 2 6 6 C 1.50703 * 125.97356 * 180.24292 * 5 4 3 7 7 C 1.41337 * 108.04890 * 0.40722 * 5 4 3 8 8 C 1.47299 * 126.43518 * 179.85209 * 7 5 4 9 9 O 1.21613 * 120.00190 * 269.71632 * 8 7 5 10 10 N 1.34777 * 119.99559 * 89.71317 * 8 7 5 11 11 C 1.46499 * 119.99665 * 179.72407 * 10 8 7 12 12 C 1.50703 * 109.47138 * 180.28062 * 11 10 8 13 13 H 1.08001 * 120.00037 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99824 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00502 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99575 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47237 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46786 * 120.00449 * 16 14 12 19 19 H 1.48502 * 109.47225 * 239.99913 * 16 14 12 20 20 C 1.34354 * 125.74823 * 89.99867 * 3 2 1 21 21 Cl 1.73591 * 126.32008 * 359.96626 * 20 3 2 22 22 H 1.08999 * 109.46563 * 59.99782 * 1 2 3 23 23 H 1.08991 * 109.47382 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47066 * 300.00234 * 1 2 3 25 25 H 1.09001 * 109.47066 * 239.99766 * 2 1 3 26 26 H 1.08999 * 109.46563 * 120.00218 * 2 1 3 27 27 H 1.09000 * 109.47044 * 270.19554 * 6 5 4 28 28 H 1.09004 * 109.47203 * 30.19447 * 6 5 4 29 29 H 1.09004 * 109.47245 * 150.19694 * 6 5 4 30 30 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 31 31 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 32 32 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 33 33 H 0.96997 * 120.00009 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2910 2.1519 -1.1356 5 6 2.7019 3.3309 -0.7588 6 6 3.0952 4.4644 -1.6707 7 6 2.7176 3.3583 0.6542 8 6 3.1186 4.4935 1.5028 9 8 4.2772 4.6114 1.8531 10 7 2.2014 5.4016 1.8909 11 6 2.5990 6.5274 2.7399 12 6 1.3950 7.3847 3.0338 13 1 0.4302 7.1180 2.6284 14 6 1.5254 8.5103 3.8194 15 7 2.7005 8.8360 4.3119 16 14 0.0330 9.5734 4.1831 17 1 -1.1611 8.9950 3.5162 18 1 -0.1945 9.6219 5.6498 19 1 0.2683 10.9480 3.6730 20 6 2.2801 2.1212 1.0904 21 17 2.1011 1.6176 2.7420 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 4.1598 4.3979 -1.8947 28 1 2.5243 4.4004 -2.5971 29 1 2.8859 5.4150 -1.1799 30 1 1.2772 5.3075 1.6118 31 1 3.0126 6.1492 3.6749 32 1 3.3521 7.1232 2.2242 33 1 2.7921 9.6276 4.8649 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787622913.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:10 Heat of formation + Delta-G solvation = 20.591603 kcal Electronic energy + Delta-G solvation = -18316.704290 eV Core-core repulsion = 15211.773204 eV Total energy + Delta-G solvation = -3104.931086 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.41354 -38.35426 -36.97310 -35.00848 -34.10305 -32.27398 -31.43783 -30.10357 -27.82964 -27.07733 -24.12598 -22.73253 -21.49022 -20.34382 -19.48169 -17.81405 -16.65937 -15.84957 -15.52813 -15.11681 -14.94524 -14.57916 -14.20518 -13.81977 -13.41577 -13.04475 -12.87154 -12.70499 -12.47952 -12.32848 -11.97637 -11.79906 -11.69503 -11.63226 -11.54063 -10.95148 -10.90004 -10.66848 -10.31208 -9.36422 -9.26543 -9.18445 -8.71079 -8.53551 -7.84899 -6.13993 -4.20336 1.32158 1.46261 2.41546 2.43715 3.25294 3.26756 3.32724 3.35875 4.07776 4.29917 4.46526 4.63401 4.71032 4.88097 4.97943 5.22315 5.23666 5.39457 5.46748 5.65314 5.69031 5.75140 5.84738 5.93181 6.40676 6.56350 7.34253 7.45853 7.46394 7.55229 7.70382 7.99698 8.66098 8.81119 9.12377 9.46148 10.96280 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022885 B = 0.004799 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.224541 B = 5832.778568 C = 6113.615314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 N -0.355 5.355 4 N -0.279 5.279 5 C 0.118 3.882 6 C -0.077 4.077 7 C -0.243 4.243 8 C 0.578 3.422 9 O -0.544 6.544 10 N -0.699 5.699 11 C 0.249 3.751 12 C -0.541 4.541 13 H 0.063 0.937 14 C 0.064 3.936 15 N -0.885 5.885 16 Si 0.902 3.098 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.152 3.848 21 Cl 0.010 6.990 22 H 0.068 0.932 23 H 0.079 0.921 24 H 0.064 0.936 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.391 0.609 31 H 0.028 0.972 32 H 0.029 0.971 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.634 -16.723 -9.288 19.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.002 3.998 3 N -0.139 5.139 4 N -0.102 5.102 5 C -0.048 4.048 6 C -0.136 4.136 7 C -0.259 4.259 8 C 0.360 3.640 9 O -0.422 6.422 10 N -0.346 5.346 11 C 0.128 3.872 12 C -0.579 4.579 13 H 0.082 0.918 14 C -0.139 4.139 15 N -0.523 5.523 16 Si 0.729 3.271 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.004 4.004 21 Cl 0.038 6.962 22 H 0.087 0.913 23 H 0.098 0.902 24 H 0.083 0.917 25 H 0.120 0.880 26 H 0.113 0.887 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.224 0.776 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.037 -17.407 -9.725 20.344 hybrid contribution -1.086 0.824 1.110 1.758 sum -5.123 -16.583 -8.615 19.377 Atomic orbital electron populations 1.22193 0.93674 1.03346 1.03673 1.21825 0.95770 0.77241 1.04945 1.48506 1.50912 1.12437 1.01996 1.77184 1.23720 1.04004 1.05285 1.22309 0.96530 0.94067 0.91925 1.20305 1.02398 0.93512 0.97360 1.20177 1.16137 0.95301 0.94254 1.17129 0.85754 0.81334 0.79779 1.90758 1.18697 1.76029 1.56750 1.46457 1.10874 1.26445 1.50871 1.19161 0.96343 0.82224 0.89423 1.21257 0.94605 1.09477 1.32555 0.91840 1.24933 0.96274 0.97352 0.95374 1.69982 1.22758 1.26087 1.33462 0.86384 0.82400 0.80151 0.78116 1.19649 1.20848 1.20798 1.21933 1.02752 0.92131 0.83545 1.98431 1.95987 1.90908 1.10882 0.91293 0.90179 0.91663 0.87981 0.88675 0.89739 0.90282 0.89530 0.77604 0.95364 0.95277 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 10.24 37.16 0.38 -0.90 16 2 C 0.12 1.08 6.97 -4.04 -0.03 1.05 16 3 N -0.36 -4.75 3.58 -57.57 -0.21 -4.95 16 4 N -0.28 -4.12 12.49 33.90 0.42 -3.70 16 5 C 0.12 1.85 7.26 -82.01 -0.60 1.25 16 6 C -0.08 -0.99 10.28 36.01 0.37 -0.62 16 7 C -0.24 -4.31 5.88 -105.02 -0.62 -4.93 16 8 C 0.58 12.39 7.20 -12.58 -0.09 12.30 16 9 O -0.54 -13.80 17.11 5.27 0.09 -13.71 16 10 N -0.70 -15.27 5.54 -62.60 -0.35 -15.62 16 11 C 0.25 6.61 5.43 -5.19 -0.03 6.58 16 12 C -0.54 -14.64 9.28 -34.44 -0.32 -14.96 16 13 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -25.98 13.29 55.43 0.74 -25.25 16 16 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 C 0.15 2.36 7.54 -16.43 -0.12 2.24 16 21 Cl 0.01 0.14 28.56 -51.86 -1.48 -1.34 16 22 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.10 0.70 7.77 -51.93 -0.40 0.30 16 27 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.09 1.18 8.01 -51.93 -0.42 0.76 16 30 H 0.39 7.62 8.30 -40.82 -0.34 7.28 16 31 H 0.03 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 312.09 15.07 4.70 4.70 Total: -1.00 -32.97 312.09 -6.33 -39.30 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -4.07 Total: 1.07 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -1.15 Total: 3.69 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 0.61 Total: -49.52 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.09 Total: -13.71 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 17 Polarization: 0.14 SS G_CDS: -1.48 Total: -1.34 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.97 -6.33 -39.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787622913.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.887 kcal (2) G-P(sol) polarization free energy of solvation -32.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds