Wall clock time and date at job start Mon Mar 30 2020 01:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50704 * 109.47196 * 2 1 4 4 N 1.30417 * 125.97475 * 270.21570 * 3 2 1 5 5 N 1.39922 * 108.95537 * 180.25815 * 4 3 2 6 6 C 1.46505 * 125.74411 * 179.71371 * 5 4 3 7 7 C 1.34346 * 108.50602 * 359.71632 * 5 4 3 8 8 Cl 1.73600 * 126.31964 * 179.97438 * 7 5 4 9 9 C 1.38277 * 107.35887 * 359.97438 * 7 5 4 10 10 C 1.47299 * 126.43480 * 180.02562 * 9 7 5 11 11 O 1.21613 * 120.00190 * 90.02347 * 10 9 7 12 12 N 1.34777 * 119.99559 * 270.02032 * 10 9 7 13 13 C 1.46499 * 119.99665 * 179.72407 * 12 10 9 14 14 C 1.50703 * 109.47138 * 180.28062 * 13 12 10 15 15 H 1.08001 * 120.00037 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99824 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00502 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99575 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47245 * 60.00392 * 18 16 14 20 20 H 1.48504 * 109.46709 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47176 * 299.99915 * 18 16 14 22 22 H 1.09001 * 109.47429 * 60.00342 * 1 2 3 23 23 H 1.09005 * 109.47443 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47699 * 299.99966 * 1 2 3 25 25 H 1.09006 * 109.47129 * 240.00118 * 2 1 3 26 26 H 1.09001 * 109.47429 * 119.99658 * 2 1 3 27 27 H 1.09000 * 109.46861 * 269.99774 * 6 5 4 28 28 H 1.08997 * 109.47254 * 30.00107 * 6 5 4 29 29 H 1.09000 * 109.46913 * 150.00205 * 6 5 4 30 30 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 31 31 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 32 32 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 33 33 H 0.96997 * 120.00009 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2839 2.1445 -1.0554 5 7 2.7370 3.4034 -0.6459 6 6 3.1300 4.5015 -1.5325 7 6 2.7509 3.4354 0.6971 8 17 3.2349 4.7757 1.6886 9 6 2.3085 2.2038 1.1438 10 6 2.1595 1.7844 2.5479 11 8 1.1069 1.9673 3.1288 12 7 3.1899 1.1979 3.1889 13 6 3.0437 0.7862 4.5872 14 6 4.3319 0.1679 5.0661 15 1 5.1750 0.0890 4.3958 16 6 4.4337 -0.2981 6.3598 17 7 3.4066 -0.2035 7.1757 18 14 6.0303 -1.0653 6.9531 19 1 7.1282 -0.0715 6.8424 20 1 5.8817 -1.4836 8.3703 21 1 6.3499 -2.2512 6.1184 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 4.1946 4.4263 -1.7539 28 1 2.5607 4.4412 -2.4600 29 1 2.9272 5.4540 -1.0429 30 1 4.0296 1.0523 2.7257 31 1 2.8090 1.6569 5.1997 32 1 2.2381 0.0566 4.6689 33 1 3.4785 -0.5310 8.0858 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787623252.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:07 Heat of formation + Delta-G solvation = -2.630351 kcal Electronic energy + Delta-G solvation = -18405.540087 eV Core-core repulsion = 15299.602021 eV Total energy + Delta-G solvation = -3105.938065 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.62220 -40.11845 -38.17526 -36.11865 -35.82649 -34.31880 -32.88197 -31.50686 -29.33371 -27.83503 -25.34974 -24.45956 -23.09410 -21.61932 -20.86678 -19.35453 -18.10858 -17.32617 -17.17381 -16.75739 -16.49242 -16.10534 -15.55179 -15.18364 -14.73958 -14.59187 -14.09343 -14.00925 -13.75170 -13.68130 -13.59568 -12.95020 -12.88245 -12.77359 -12.66537 -12.53680 -12.24043 -12.20022 -11.73622 -11.49400 -10.98874 -10.76796 -10.38885 -9.85347 -9.80783 -8.25614 -6.41769 0.12233 0.25134 1.14647 1.44542 1.46081 1.49079 1.57318 1.57656 2.35182 2.60057 3.09180 3.24023 3.65455 4.04274 4.13456 4.18233 4.31430 4.36020 4.43289 4.57882 4.59946 4.98866 5.04228 5.12330 5.19531 5.27886 5.32896 5.47842 5.49237 5.67958 5.86804 6.26786 6.66656 6.85707 7.24571 7.41670 8.86246 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.020265 B = 0.005213 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.339494 B = 5369.755851 C = 6014.349203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.049 4.049 3 C 0.120 3.880 4 N -0.276 5.276 5 N -0.345 5.345 6 C 0.080 3.920 7 C 0.155 3.845 8 Cl 0.022 6.978 9 C -0.276 4.276 10 C 0.587 3.413 11 O -0.588 6.588 12 N -0.692 5.692 13 C 0.268 3.732 14 C -0.555 4.555 15 H 0.081 0.919 16 C 0.008 3.992 17 N -0.929 5.929 18 Si 0.982 3.018 19 H -0.264 1.264 20 H -0.285 1.285 21 H -0.262 1.262 22 H 0.065 0.935 23 H 0.086 0.914 24 H 0.033 0.967 25 H 0.111 0.889 26 H 0.076 0.924 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.106 0.894 30 H 0.405 0.595 31 H -0.009 1.009 32 H -0.005 1.005 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.961 7.056 -19.268 20.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.088 4.088 3 C -0.046 4.046 4 N -0.100 5.100 5 N -0.127 5.127 6 C -0.058 4.058 7 C -0.003 4.003 8 Cl 0.050 6.950 9 C -0.292 4.292 10 C 0.372 3.628 11 O -0.468 6.468 12 N -0.340 5.340 13 C 0.146 3.854 14 C -0.593 4.593 15 H 0.099 0.901 16 C -0.192 4.192 17 N -0.567 5.567 18 Si 0.805 3.195 19 H -0.189 1.189 20 H -0.210 1.210 21 H -0.187 1.187 22 H 0.084 0.916 23 H 0.105 0.895 24 H 0.052 0.948 25 H 0.130 0.870 26 H 0.095 0.905 27 H 0.123 0.877 28 H 0.135 0.865 29 H 0.124 0.876 30 H 0.240 0.760 31 H 0.009 0.991 32 H 0.013 0.987 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.278 7.443 -19.957 21.338 hybrid contribution 0.792 0.010 1.644 1.825 sum 2.069 7.453 -18.313 19.879 Atomic orbital electron populations 1.21670 0.93239 1.03373 1.01569 1.20186 0.97118 0.86775 1.04732 1.22531 0.96579 0.97791 0.87692 1.77172 1.21683 0.90024 1.21082 1.48721 1.48954 1.12731 1.02278 1.22534 1.03679 0.85083 0.94509 1.21908 1.01976 0.91354 0.85077 1.98440 1.89349 1.41704 1.65514 1.19819 1.19527 0.95473 0.94413 1.17527 0.83322 0.77066 0.84864 1.90722 1.29524 1.57631 1.68968 1.46203 1.15008 1.58712 1.14110 1.18623 0.96762 0.93162 0.76892 1.21539 0.98474 1.41012 0.98277 0.90091 1.25990 1.00810 0.95901 0.96471 1.70121 1.32703 1.46759 1.07140 0.85257 0.78158 0.78983 0.77119 1.18860 1.21020 1.18680 0.91615 0.89541 0.94758 0.87037 0.90498 0.87721 0.86512 0.87580 0.75998 0.99071 0.98719 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.89 71.98 0.71 -2.79 16 2 C -0.05 -1.28 6.33 29.85 0.19 -1.09 16 3 C 0.12 3.66 6.52 43.53 0.28 3.95 16 4 N -0.28 -7.61 12.49 -46.66 -0.58 -8.19 16 5 N -0.34 -8.35 3.98 -357.40 -1.42 -9.78 16 6 C 0.08 1.01 11.28 127.77 1.44 2.45 16 7 C 0.16 4.61 7.54 84.32 0.64 5.25 16 8 Cl 0.02 0.59 28.56 -2.72 -0.08 0.51 16 9 C -0.28 -9.77 5.88 -20.12 -0.12 -9.89 16 10 C 0.59 25.92 7.20 86.63 0.62 26.55 16 11 O -0.59 -31.04 17.11 -4.07 -0.07 -31.11 16 12 N -0.69 -31.10 5.54 -470.22 -2.61 -33.71 16 13 C 0.27 14.86 5.43 85.63 0.46 15.32 16 14 C -0.56 -30.33 9.28 25.60 0.24 -30.09 16 15 H 0.08 4.03 7.60 -2.91 -0.02 4.01 16 16 C 0.01 0.45 5.46 84.66 0.46 0.91 16 17 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 18 Si 0.98 42.29 29.54 68.60 2.03 44.32 16 19 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 20 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 22 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 24 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 26 H 0.08 2.21 8.01 -2.39 -0.02 2.19 16 27 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.11 1.04 7.77 -2.39 -0.02 1.02 16 30 H 0.40 15.84 8.30 -92.71 -0.77 15.07 16 31 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 32 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 33 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -73.13 311.76 2.85 -70.28 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.37 Total: 12.62 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 4.93 Total: 10.56 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -4.33 Total: -107.19 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.07 Total: -31.11 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 17 Polarization: 0.59 SS G_CDS: -0.08 Total: 0.51 kcal Total: -73.13 2.85 -70.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787623252.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.651 kcal (2) G-P(sol) polarization free energy of solvation -73.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds