Wall clock time and date at job start Mon Mar 30 2020 01:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31436 * 1 3 3 Si 1.86797 * 119.99962 * 2 1 4 4 H 1.48509 * 109.47362 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47193 * 299.99290 * 3 2 1 6 6 H 1.48501 * 109.47551 * 59.99545 * 3 2 1 7 7 C 1.38751 * 120.00224 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00395 * 180.02562 * 7 2 1 9 9 O 1.34924 * 119.99823 * 0.02562 * 7 2 1 10 10 C 1.34315 * 116.99802 * 180.02562 * 9 7 2 11 11 O 1.21212 * 120.00119 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99902 * 180.02562 * 10 9 7 13 13 C 1.53003 * 109.47508 * 179.97438 * 12 10 9 14 14 C 1.50695 * 109.47128 * 179.97438 * 13 12 10 15 15 C 1.39336 * 120.03313 * 270.19959 * 14 13 12 16 16 N 1.31090 * 121.74372 * 180.24753 * 15 14 13 17 17 C 1.33677 * 121.32490 * 359.79232 * 16 15 14 18 18 C 1.40602 * 121.07846 * 179.97438 * 17 16 15 19 19 C 1.36077 * 119.74756 * 180.02562 * 18 17 16 20 20 C 1.39365 * 121.06544 * 359.95101 * 19 18 17 21 21 C 1.36135 * 120.86733 * 0.02562 * 20 19 18 22 22 C 1.40427 * 119.61742 * 359.97438 * 21 20 19 23 23 C 1.36576 * 120.03152 * 90.00316 * 14 13 12 24 24 H 0.97003 * 120.00217 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.46999 * 59.99813 * 12 10 9 26 26 H 1.09001 * 109.47441 * 300.00037 * 12 10 9 27 27 H 1.09003 * 109.46563 * 60.00150 * 13 12 10 28 28 H 1.09001 * 109.46940 * 300.00515 * 13 12 10 29 29 H 1.07995 * 119.12636 * 0.02562 * 15 14 13 30 30 H 1.07996 * 120.12773 * 0.02822 * 18 17 16 31 31 H 1.07995 * 119.46463 * 179.97438 * 19 18 17 32 32 H 1.08002 * 119.56330 * 180.02562 * 20 19 18 33 33 H 1.08008 * 120.18851 * 179.97438 * 21 20 19 34 34 H 1.08002 * 120.92819 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.7084 1.3464 0.0006 5 1 1.8897 2.3964 -1.2126 6 1 1.8896 2.3966 1.2124 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0010 9 8 1.3336 -2.3701 0.0005 10 6 2.0651 -3.4965 0.0016 11 8 3.2756 -3.4330 0.0030 12 6 1.3810 -4.8392 0.0011 13 6 2.4347 -5.9486 0.0019 14 6 1.7505 -7.2913 0.0020 15 6 1.4297 -7.9103 1.2083 16 7 0.8389 -9.0799 1.2476 17 6 0.5129 -9.7318 0.1270 18 6 -0.1202 -10.9863 0.1752 19 6 -0.4395 -11.6263 -0.9825 20 6 -0.1502 -11.0582 -2.2217 21 6 0.4615 -9.8451 -2.3082 22 6 0.8055 -9.1560 -1.1340 23 6 1.4408 -7.9007 -1.1803 24 1 -0.4850 0.8401 -0.0004 25 1 0.7592 -4.9298 -0.8896 26 1 0.7572 -4.9296 0.8904 27 1 3.0568 -5.8581 0.8924 28 1 3.0582 -5.8581 -0.8876 29 1 1.6774 -7.4151 2.1355 30 1 -0.3522 -11.4402 1.1273 31 1 -0.9253 -12.5899 -0.9401 32 1 -0.4148 -11.5873 -3.1253 33 1 0.6810 -9.4152 -3.2744 34 1 1.6796 -7.4341 -2.1246 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795806566.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:48 Heat of formation + Delta-G solvation = -39.088038 kcal Electronic energy + Delta-G solvation = -18894.439328 eV Core-core repulsion = 15757.060437 eV Total energy + Delta-G solvation = -3137.378891 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.95887 -39.02232 -37.48530 -35.48106 -34.32861 -32.53241 -32.12881 -30.33425 -29.52538 -25.94444 -24.62889 -24.20214 -22.29892 -22.00417 -19.74399 -18.15503 -17.73034 -17.42516 -16.78477 -16.18579 -15.20324 -14.80270 -14.71364 -14.49957 -14.34578 -14.26771 -13.83937 -13.14672 -13.09303 -12.85789 -12.67002 -12.02401 -11.79420 -11.62904 -11.61688 -11.34908 -11.20142 -10.81394 -10.48246 -10.39877 -10.37365 -9.79596 -9.55268 -9.07264 -8.76071 -8.58306 -8.36809 -6.41006 -4.09056 0.27295 0.69118 1.88072 2.77458 3.09758 3.19137 3.26606 3.53451 3.90747 4.01568 4.17779 4.43061 4.50459 4.64998 4.74438 4.83133 4.98906 4.99537 5.11424 5.20063 5.26835 5.38061 5.51109 5.64706 5.80246 5.84704 5.92581 5.96463 6.14314 6.22753 6.32816 6.39145 6.45924 6.71622 6.79062 7.40160 7.81899 7.95663 8.71571 9.08010 9.86060 10.77119 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.043149 B = 0.003063 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.758461 B = 9138.525878 C = 9259.201452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.382 4.382 8 H 0.096 0.904 9 O -0.216 6.216 10 C 0.397 3.603 11 O -0.558 6.558 12 C -0.098 4.098 13 C -0.063 4.063 14 C -0.126 4.126 15 C 0.143 3.857 16 N -0.476 5.476 17 C 0.119 3.881 18 C -0.092 4.092 19 C -0.107 4.107 20 C -0.121 4.121 21 C -0.095 4.095 22 C -0.099 4.099 23 C -0.058 4.058 24 H 0.269 0.731 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.162 0.838 30 H 0.133 0.867 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.023 -20.037 -2.991 20.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.458 4.458 8 H 0.114 0.886 9 O -0.123 6.123 10 C 0.243 3.757 11 O -0.456 6.456 12 C -0.136 4.136 13 C -0.101 4.101 14 C -0.128 4.128 15 C -0.030 4.030 16 N -0.183 5.183 17 C -0.002 4.002 18 C -0.111 4.111 19 C -0.127 4.127 20 C -0.139 4.139 21 C -0.113 4.113 22 C -0.101 4.101 23 C -0.084 4.084 24 H 0.079 0.921 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.179 0.821 30 H 0.151 0.849 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.148 0.852 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.155 -20.342 -2.218 20.495 hybrid contribution 0.513 1.240 -0.825 1.576 sum -0.642 -19.101 -3.044 19.353 Atomic orbital electron populations 1.70001 1.06008 1.27557 1.46712 1.25339 0.95807 0.98888 0.96249 0.85628 0.79464 0.80122 0.78118 1.18955 1.20189 1.20171 1.21274 0.92380 0.79898 1.52295 0.88638 1.83883 1.39453 1.13458 1.75502 1.23141 0.86682 0.87294 0.78537 1.90554 1.15741 1.88183 1.51132 1.21059 0.98335 0.89474 1.04743 1.20346 0.96690 0.87937 1.05117 1.20761 0.99913 0.98120 0.93993 1.23003 0.91895 0.90261 0.97852 1.68075 1.11710 1.08643 1.29913 1.18921 0.97900 0.95190 0.88206 1.20799 0.98034 0.93077 0.99183 1.20880 0.99567 1.00088 0.92158 1.20901 0.99230 0.95875 0.97924 1.21021 0.98050 0.95031 0.97239 1.18872 1.00812 0.95904 0.94551 1.21435 0.95002 0.93004 0.98959 0.92142 0.89119 0.88943 0.89562 0.89785 0.82099 0.84894 0.85492 0.85664 0.85240 0.84155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.46 13.67 55.48 0.76 -24.70 16 2 C 0.04 1.16 5.49 -17.53 -0.10 1.06 16 3 Si 0.94 21.30 29.55 -169.99 -5.02 16.27 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.38 -11.31 9.64 30.92 0.30 -11.01 16 8 H 0.10 2.84 6.86 -52.48 -0.36 2.48 16 9 O -0.22 -6.16 9.75 -20.72 -0.20 -6.36 16 10 C 0.40 9.50 7.91 36.00 0.28 9.79 16 11 O -0.56 -14.51 15.22 -19.05 -0.29 -14.80 16 12 C -0.10 -1.68 5.79 -27.88 -0.16 -1.84 16 13 C -0.06 -0.90 4.63 -27.88 -0.13 -1.03 16 14 C -0.13 -1.61 5.12 -104.82 -0.54 -2.15 16 15 C 0.14 1.84 10.82 -17.46 -0.19 1.65 16 16 N -0.48 -6.65 10.34 -10.97 -0.11 -6.77 16 17 C 0.12 1.56 6.60 -84.86 -0.56 1.00 16 18 C -0.09 -0.99 9.98 -39.47 -0.39 -1.39 16 19 C -0.11 -0.92 9.94 -39.94 -0.40 -1.32 16 20 C -0.12 -1.03 9.96 -39.92 -0.40 -1.42 16 21 C -0.09 -0.92 9.77 -39.51 -0.39 -1.31 16 22 C -0.10 -1.21 5.74 -106.80 -0.61 -1.82 16 23 C -0.06 -0.70 9.54 -39.23 -0.37 -1.07 16 24 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.09 1.44 8.14 -51.92 -0.42 1.01 16 26 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 27 H 0.09 1.24 8.05 -51.93 -0.42 0.82 16 28 H 0.08 1.22 8.04 -51.93 -0.42 0.80 16 29 H 0.16 1.74 8.06 -52.49 -0.42 1.31 16 30 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 34 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 306.67 15.07 4.62 4.62 Total: -1.00 -34.42 306.67 -7.61 -42.04 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -3.71 Total: 0.56 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -3.65 Total: -10.86 kcal Atomic # 7 Polarization: -32.11 SS G_CDS: 0.64 Total: -31.46 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.49 Total: -21.16 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.42 -7.61 -42.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795806566.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.948 kcal (2) G-P(sol) polarization free energy of solvation -34.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds