Wall clock time and date at job start Mon Mar 30 2020 01:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31436 * 1 3 3 Si 1.86797 * 119.99962 * 2 1 4 4 H 1.48509 * 109.47362 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47193 * 299.99290 * 3 2 1 6 6 H 1.48501 * 109.47551 * 59.99545 * 3 2 1 7 7 C 1.38751 * 120.00224 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00395 * 180.02562 * 7 2 1 9 9 O 1.34924 * 119.99823 * 0.02562 * 7 2 1 10 10 C 1.34315 * 116.99802 * 180.02562 * 9 7 2 11 11 O 1.21212 * 120.00119 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99902 * 180.02562 * 10 9 7 13 13 C 1.53003 * 109.47508 * 179.97438 * 12 10 9 14 14 C 1.50695 * 109.47128 * 179.97438 * 13 12 10 15 15 C 1.39336 * 120.03313 * 270.19959 * 14 13 12 16 16 N 1.31090 * 121.74372 * 180.24753 * 15 14 13 17 17 C 1.33677 * 121.32490 * 359.79232 * 16 15 14 18 18 C 1.40602 * 121.07846 * 179.97438 * 17 16 15 19 19 C 1.36077 * 119.74756 * 180.02562 * 18 17 16 20 20 C 1.39365 * 121.06544 * 359.95101 * 19 18 17 21 21 C 1.36135 * 120.86733 * 0.02562 * 20 19 18 22 22 C 1.40427 * 119.61742 * 359.97438 * 21 20 19 23 23 C 1.36576 * 120.03152 * 90.00316 * 14 13 12 24 24 H 0.97003 * 120.00217 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.46999 * 59.99813 * 12 10 9 26 26 H 1.09001 * 109.47441 * 300.00037 * 12 10 9 27 27 H 1.09003 * 109.46563 * 60.00150 * 13 12 10 28 28 H 1.09001 * 109.46940 * 300.00515 * 13 12 10 29 29 H 1.07995 * 119.12636 * 0.02562 * 15 14 13 30 30 H 1.07996 * 120.12773 * 0.02822 * 18 17 16 31 31 H 1.07995 * 119.46463 * 179.97438 * 19 18 17 32 32 H 1.08002 * 119.56330 * 180.02562 * 20 19 18 33 33 H 1.08008 * 120.18851 * 179.97438 * 21 20 19 34 34 H 1.08002 * 120.92819 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.7084 1.3464 0.0006 5 1 1.8897 2.3964 -1.2126 6 1 1.8896 2.3966 1.2124 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0010 9 8 1.3336 -2.3701 0.0005 10 6 2.0651 -3.4965 0.0016 11 8 3.2756 -3.4330 0.0030 12 6 1.3810 -4.8392 0.0011 13 6 2.4347 -5.9486 0.0019 14 6 1.7505 -7.2913 0.0020 15 6 1.4297 -7.9103 1.2083 16 7 0.8389 -9.0799 1.2476 17 6 0.5129 -9.7318 0.1270 18 6 -0.1202 -10.9863 0.1752 19 6 -0.4395 -11.6263 -0.9825 20 6 -0.1502 -11.0582 -2.2217 21 6 0.4615 -9.8451 -2.3082 22 6 0.8055 -9.1560 -1.1340 23 6 1.4408 -7.9007 -1.1803 24 1 -0.4850 0.8401 -0.0004 25 1 0.7592 -4.9298 -0.8896 26 1 0.7572 -4.9296 0.8904 27 1 3.0568 -5.8581 0.8924 28 1 3.0582 -5.8581 -0.8876 29 1 1.6774 -7.4151 2.1355 30 1 -0.3522 -11.4402 1.1273 31 1 -0.9253 -12.5899 -0.9401 32 1 -0.4148 -11.5873 -3.1253 33 1 0.6810 -9.4152 -3.2744 34 1 1.6796 -7.4341 -2.1246 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795806566.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:48 Heat of formation + Delta-G solvation = -59.349343 kcal Electronic energy + Delta-G solvation = -18895.317924 eV Core-core repulsion = 15757.060437 eV Total energy + Delta-G solvation = -3138.257487 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.84210 -40.98488 -38.38471 -37.36100 -35.51985 -34.29929 -33.52384 -31.17320 -30.62254 -27.75555 -26.01578 -25.16233 -23.29726 -22.94709 -21.48213 -19.87636 -19.00307 -18.55669 -18.22664 -17.26113 -16.90205 -16.57884 -16.21167 -15.56905 -15.39246 -15.30540 -14.75109 -14.57570 -14.43058 -13.97652 -13.83305 -13.53395 -13.28256 -13.08258 -12.60276 -12.48745 -12.39679 -12.28020 -12.16278 -11.98601 -11.95945 -11.39078 -11.02729 -10.69820 -10.48523 -9.64856 -9.19078 -8.53775 -6.33720 -0.55415 -0.17304 1.03120 1.30539 1.34816 1.53248 1.65820 1.95415 2.13894 2.77465 2.97602 3.13762 3.35737 3.65908 3.76169 3.81548 3.96400 4.05265 4.10245 4.21460 4.33201 4.41108 4.54515 4.56556 4.80596 4.84511 4.86917 5.07332 5.13344 5.15337 5.20237 5.23913 5.44762 5.51819 5.61543 5.84051 5.94669 6.68594 6.90059 6.91853 7.78338 8.67252 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.043149 B = 0.003063 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.758461 B = 9138.525878 C = 9259.201452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.006 4.006 3 Si 1.017 2.983 4 H -0.264 1.264 5 H -0.260 1.260 6 H -0.261 1.261 7 C -0.420 4.420 8 H 0.082 0.918 9 O -0.249 6.249 10 C 0.396 3.604 11 O -0.581 6.581 12 C -0.087 4.087 13 C -0.048 4.048 14 C -0.136 4.136 15 C 0.132 3.868 16 N -0.499 5.499 17 C 0.094 3.906 18 C -0.116 4.116 19 C -0.094 4.094 20 C -0.117 4.117 21 C -0.103 4.103 22 C -0.118 4.118 23 C -0.055 4.055 24 H 0.278 0.722 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.173 0.827 30 H 0.138 0.862 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.152 0.848 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.405 -21.124 -4.234 21.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.206 4.206 3 Si 0.836 3.164 4 H -0.188 1.188 5 H -0.184 1.184 6 H -0.185 1.185 7 C -0.496 4.496 8 H 0.100 0.900 9 O -0.158 6.158 10 C 0.245 3.755 11 O -0.479 6.479 12 C -0.125 4.125 13 C -0.086 4.086 14 C -0.138 4.138 15 C -0.040 4.040 16 N -0.207 5.207 17 C -0.027 4.027 18 C -0.135 4.135 19 C -0.113 4.113 20 C -0.135 4.135 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.080 4.080 24 H 0.088 0.912 25 H 0.126 0.874 26 H 0.126 0.874 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.190 0.810 30 H 0.156 0.844 31 H 0.177 0.823 32 H 0.177 0.823 33 H 0.169 0.831 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.542 -21.460 -3.461 21.792 hybrid contribution 0.589 1.349 -0.499 1.554 sum -0.953 -20.112 -3.959 20.520 Atomic orbital electron populations 1.70082 1.07667 1.29270 1.47185 1.26540 0.96873 1.02410 0.94770 0.84576 0.77812 0.74808 0.79211 1.18811 1.18442 1.18521 1.21457 0.92145 0.81268 1.54735 0.90006 1.83910 1.40557 1.14391 1.76902 1.24469 0.86723 0.88328 0.76015 1.90523 1.17099 1.88702 1.51598 1.21195 0.98996 0.86038 1.06221 1.20162 0.95789 0.87827 1.04837 1.20507 1.01277 0.97478 0.94529 1.23204 0.92013 0.90340 0.98492 1.68078 1.12612 1.09165 1.30845 1.19362 0.98605 0.96212 0.88500 1.21018 0.99077 0.92845 1.00542 1.21316 0.97721 1.00824 0.91465 1.21354 0.97626 0.95351 0.99123 1.21347 0.97951 0.95531 0.97283 1.19116 1.01418 0.96251 0.95222 1.21707 0.93945 0.93004 0.99366 0.91246 0.87392 0.87418 0.89975 0.90043 0.81016 0.84396 0.82286 0.82331 0.83054 0.82351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.75 13.67 21.62 0.30 -53.45 16 2 C -0.01 -0.34 5.49 84.87 0.47 0.12 16 3 Si 1.02 43.54 29.55 68.60 2.03 45.57 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 6 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 7 C -0.42 -25.57 9.64 67.94 0.66 -24.92 16 8 H 0.08 5.05 6.86 -2.91 -0.02 5.03 16 9 O -0.25 -14.65 9.75 14.79 0.14 -14.50 16 10 C 0.40 19.39 7.91 71.23 0.56 19.95 16 11 O -0.58 -30.92 15.22 20.77 0.32 -30.60 16 12 C -0.09 -2.95 5.79 29.85 0.17 -2.78 16 13 C -0.05 -1.36 4.63 29.85 0.14 -1.22 16 14 C -0.14 -3.42 5.12 -19.99 -0.10 -3.52 16 15 C 0.13 3.42 10.82 85.07 0.92 4.34 16 16 N -0.50 -14.06 10.34 -188.63 -1.95 -16.01 16 17 C 0.09 2.42 6.60 40.29 0.27 2.69 16 18 C -0.12 -2.36 9.98 22.34 0.22 -2.14 16 19 C -0.09 -1.34 9.94 22.04 0.22 -1.12 16 20 C -0.12 -1.56 9.96 22.05 0.22 -1.34 16 21 C -0.10 -1.73 9.77 22.31 0.22 -1.51 16 22 C -0.12 -2.73 5.74 -21.28 -0.12 -2.85 16 23 C -0.05 -1.25 9.54 22.50 0.21 -1.03 16 24 H 0.28 14.94 8.31 -92.71 -0.77 14.17 16 25 H 0.11 3.33 8.14 -2.38 -0.02 3.31 16 26 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 27 H 0.08 2.38 8.05 -2.39 -0.02 2.36 16 28 H 0.08 2.34 8.04 -2.39 -0.02 2.32 16 29 H 0.17 3.78 8.06 -2.91 -0.02 3.76 16 30 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 31 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 32 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 33 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 34 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -76.52 306.67 6.00 -70.53 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 1.11 Total: 13.82 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 4.05 Total: -15.34 kcal Atomic # 7 Polarization: -67.81 SS G_CDS: -1.66 Total: -69.46 kcal Atomic # 8 Polarization: -45.57 SS G_CDS: 0.46 Total: -45.11 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -76.52 6.00 -70.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795806566.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.176 kcal (2) G-P(sol) polarization free energy of solvation -76.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds