Wall clock time and date at job start Mon Mar 30 2020 00:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28711 * 126.03744 * 2 1 4 4 N 1.28519 * 110.65489 * 179.68761 * 3 2 1 5 5 C 1.33293 * 109.45769 * 0.46233 * 4 3 2 6 6 C 1.37078 * 106.36540 * 359.55659 * 5 4 3 7 7 C 1.47085 * 127.20092 * 180.24332 * 6 5 4 8 8 O 1.21541 * 119.99775 * 0.03001 * 7 6 5 9 9 O 1.34804 * 120.00113 * 180.02562 * 7 6 5 10 10 C 1.45196 * 116.99914 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.46868 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.46880 * 179.97438 * 11 10 9 13 13 S 1.80998 * 109.46845 * 180.02562 * 12 11 10 14 14 C 1.76205 * 100.00090 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99402 * 0.02562 * 14 13 12 16 16 C 1.38788 * 120.00394 * 179.97438 * 14 13 12 17 17 N 1.31634 * 120.00443 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 120.00166 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47294 * 89.99303 * 18 16 14 20 20 H 1.48496 * 109.47254 * 209.99814 * 18 16 14 21 21 H 1.48502 * 109.46620 * 329.99675 * 18 16 14 22 22 H 1.09004 * 109.46850 * 270.03382 * 1 2 3 23 23 H 1.08996 * 109.47516 * 30.03933 * 1 2 3 24 24 H 1.09002 * 109.47295 * 150.04400 * 1 2 3 25 25 H 1.08002 * 126.82028 * 179.82593 * 5 4 3 26 26 H 1.08998 * 109.47245 * 300.00053 * 10 9 7 27 27 H 1.09004 * 109.47096 * 60.00329 * 10 9 7 28 28 H 1.08998 * 109.47335 * 300.00126 * 11 10 9 29 29 H 1.09003 * 109.47259 * 60.00714 * 11 10 9 30 30 H 1.08998 * 109.47296 * 300.00220 * 12 11 10 31 31 H 1.09004 * 109.47033 * 60.00488 * 12 11 10 32 32 H 0.96996 * 119.99988 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2222 1.0408 0.0000 4 7 3.4614 0.6999 0.0066 5 6 3.5561 -0.6296 0.0011 6 6 2.2717 -1.1084 0.0007 7 6 1.8476 -2.5168 0.0005 8 8 2.6803 -3.4022 0.0013 9 8 0.5354 -2.8256 -0.0005 10 6 0.1901 -4.2359 -0.0012 11 6 -1.3323 -4.3882 -0.0016 12 6 -1.6962 -5.8744 -0.0030 13 16 -3.4971 -6.0545 -0.0042 14 6 -3.6289 -7.8116 -0.0049 15 1 -2.7366 -8.4200 -0.0041 16 6 -4.8794 -8.4138 -0.0053 17 7 -4.9778 -9.7265 -0.0064 18 14 -6.4229 -7.3616 -0.0060 19 1 -6.8313 -7.0826 -1.4062 20 1 -7.5151 -8.0846 0.6936 21 1 -6.1490 -6.0810 0.6943 22 1 -0.3633 0.0006 1.0277 23 1 -0.3634 0.8896 -0.5144 24 1 -0.3634 -0.8904 -0.5132 25 1 4.4645 -1.2138 0.0017 26 1 0.6034 -4.7107 -0.8910 27 1 0.6022 -4.7113 0.8890 28 1 -1.7452 -3.9135 0.8885 29 1 -1.7448 -3.9128 -0.8915 30 1 -1.2833 -6.3487 -0.8933 31 1 -1.2837 -6.3503 0.8867 32 1 -5.8517 -10.1473 -0.0071 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805555590.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:59 Heat of formation + Delta-G solvation = 2.502657 kcal Electronic energy + Delta-G solvation = -17500.260092 eV Core-core repulsion = 14396.588317 eV Total energy + Delta-G solvation = -3103.671775 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.74855 -40.58266 -37.11265 -35.20803 -33.79604 -32.53136 -31.93516 -28.53448 -27.17094 -25.75950 -24.52516 -22.86802 -21.65932 -21.29057 -18.61386 -17.59783 -17.47820 -17.33771 -16.77752 -16.60412 -15.10092 -14.87975 -14.81874 -14.70684 -13.82923 -13.74130 -13.22267 -13.09582 -12.92193 -12.72789 -12.47523 -11.72271 -11.60250 -11.44686 -11.21576 -11.15052 -11.09181 -10.66057 -10.60156 -10.40057 -9.99813 -9.91069 -9.10101 -8.71967 -7.07776 -6.37131 -4.11670 0.32962 1.64791 1.81378 2.07506 2.40204 2.89587 3.22453 3.36273 3.45203 3.73038 4.16769 4.22364 4.38642 4.53172 4.62073 4.67838 4.83908 4.90447 5.01127 5.01646 5.09720 5.18686 5.49431 5.50873 5.55253 5.78544 5.88342 6.05287 6.16721 6.39102 7.19989 7.86137 7.86358 8.35624 9.07886 10.72250 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.046406 B = 0.003067 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.222220 B = 9128.310792 C = 9700.480894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.258 5.258 3 N -0.048 5.048 4 N -0.276 5.276 5 C 0.041 3.959 6 C -0.061 4.061 7 C 0.546 3.454 8 O -0.482 6.482 9 O -0.356 6.356 10 C 0.073 3.927 11 C -0.101 4.101 12 C -0.086 4.086 13 S -0.205 6.205 14 C -0.506 4.506 15 H 0.089 0.911 16 C 0.093 3.907 17 N -0.879 5.879 18 Si 0.862 3.138 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.238 1.238 22 H 0.101 0.899 23 H 0.108 0.892 24 H 0.117 0.883 25 H 0.207 0.793 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.739 18.181 0.038 21.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.058 5.058 3 N -0.030 5.030 4 N -0.138 5.138 5 C -0.120 4.120 6 C -0.192 4.192 7 C 0.386 3.614 8 O -0.367 6.367 9 O -0.273 6.273 10 C -0.001 4.001 11 C -0.140 4.140 12 C -0.234 4.234 13 S 0.023 5.977 14 C -0.653 4.653 15 H 0.107 0.893 16 C -0.116 4.116 17 N -0.516 5.516 18 Si 0.686 3.314 19 H -0.193 1.193 20 H -0.200 1.200 21 H -0.162 1.162 22 H 0.120 0.880 23 H 0.126 0.874 24 H 0.135 0.865 25 H 0.223 0.777 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.012 19.984 0.044 22.352 hybrid contribution -0.004 -2.149 -0.011 2.149 sum 10.008 17.835 0.033 20.451 Atomic orbital electron populations 1.22676 0.70829 1.07140 1.06264 1.47931 1.10194 1.03706 1.43921 1.78279 0.96802 1.11558 1.16337 1.75033 1.09022 1.12089 1.17670 1.23936 0.96549 0.91351 1.00150 1.21268 0.92029 0.87229 1.18689 1.19308 0.81720 0.86539 0.73793 1.90944 1.53243 1.47509 1.44985 1.86492 1.24928 1.32026 1.83813 1.23393 0.97308 0.75944 1.03480 1.21359 0.91277 0.96893 1.04439 1.22948 0.99960 0.96101 1.04401 1.84152 1.02814 1.13196 1.97577 1.22101 0.97321 0.87048 1.58877 0.89256 1.24794 0.98799 0.94764 0.93258 1.69931 1.25313 1.08460 1.47850 0.86675 0.82832 0.82101 0.79750 1.19302 1.19989 1.16179 0.88014 0.87365 0.86488 0.77655 0.90404 0.90397 0.90127 0.90173 0.90891 0.90849 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.38 10.91 59.85 0.65 1.04 16 2 N -0.26 -2.37 3.80 -64.13 -0.24 -2.62 16 3 N -0.05 -0.53 13.14 60.35 0.79 0.26 16 4 N -0.28 -3.20 12.35 30.48 0.38 -2.82 16 5 C 0.04 0.40 11.87 -17.34 -0.21 0.20 16 6 C -0.06 -0.62 6.98 -82.35 -0.58 -1.20 16 7 C 0.55 6.06 7.94 34.32 0.27 6.33 16 8 O -0.48 -6.45 16.72 -19.30 -0.32 -6.77 16 9 O -0.36 -3.68 7.85 -40.78 -0.32 -4.00 16 10 C 0.07 0.82 5.48 37.16 0.20 1.03 16 11 C -0.10 -1.29 5.60 -26.73 -0.15 -1.44 16 12 C -0.09 -1.48 5.67 37.16 0.21 -1.27 16 13 S -0.21 -4.65 19.41 -107.50 -2.09 -6.74 16 14 C -0.51 -14.08 10.04 30.94 0.31 -13.77 16 15 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 16 C 0.09 2.62 5.50 -17.43 -0.10 2.52 16 17 N -0.88 -25.98 13.97 55.49 0.78 -25.21 16 18 Si 0.86 20.67 27.74 -169.99 -4.72 15.95 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.24 -5.53 6.74 56.52 0.38 -5.15 16 22 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.12 0.62 6.29 -51.93 -0.33 0.30 16 25 H 0.21 1.47 8.06 -52.49 -0.42 1.05 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 31 H 0.07 1.27 8.14 -51.91 -0.42 0.85 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 301.73 15.07 4.55 4.55 Total: -1.00 -32.44 301.73 -4.28 -36.72 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: -3.71 Total: -2.77 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 0.62 Total: -6.56 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: 1.70 Total: -30.38 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -0.64 Total: -10.77 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.72 Total: 15.95 kcal Atomic # 16 Polarization: -4.65 SS G_CDS: -2.09 Total: -6.74 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.44 -4.28 -36.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805555590.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.226 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds