Wall clock time and date at job start Mon Mar 30 2020 00:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28711 * 126.03744 * 2 1 4 4 N 1.28519 * 110.65489 * 179.68761 * 3 2 1 5 5 C 1.33293 * 109.45769 * 0.46233 * 4 3 2 6 6 C 1.37078 * 106.36540 * 359.55659 * 5 4 3 7 7 C 1.47085 * 127.20092 * 180.24332 * 6 5 4 8 8 O 1.21541 * 119.99775 * 0.03001 * 7 6 5 9 9 O 1.34804 * 120.00113 * 180.02562 * 7 6 5 10 10 C 1.45196 * 116.99914 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.46868 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.46880 * 179.97438 * 11 10 9 13 13 S 1.80998 * 109.46845 * 180.02562 * 12 11 10 14 14 C 1.76205 * 100.00090 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99402 * 0.02562 * 14 13 12 16 16 C 1.38788 * 120.00394 * 179.97438 * 14 13 12 17 17 N 1.31634 * 120.00443 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 120.00166 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47294 * 89.99303 * 18 16 14 20 20 H 1.48496 * 109.47254 * 209.99814 * 18 16 14 21 21 H 1.48502 * 109.46620 * 329.99675 * 18 16 14 22 22 H 1.09004 * 109.46850 * 270.03382 * 1 2 3 23 23 H 1.08996 * 109.47516 * 30.03933 * 1 2 3 24 24 H 1.09002 * 109.47295 * 150.04400 * 1 2 3 25 25 H 1.08002 * 126.82028 * 179.82593 * 5 4 3 26 26 H 1.08998 * 109.47245 * 300.00053 * 10 9 7 27 27 H 1.09004 * 109.47096 * 60.00329 * 10 9 7 28 28 H 1.08998 * 109.47335 * 300.00126 * 11 10 9 29 29 H 1.09003 * 109.47259 * 60.00714 * 11 10 9 30 30 H 1.08998 * 109.47296 * 300.00220 * 12 11 10 31 31 H 1.09004 * 109.47033 * 60.00488 * 12 11 10 32 32 H 0.96996 * 119.99988 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2222 1.0408 0.0000 4 7 3.4614 0.6999 0.0066 5 6 3.5561 -0.6296 0.0011 6 6 2.2717 -1.1084 0.0007 7 6 1.8476 -2.5168 0.0005 8 8 2.6803 -3.4022 0.0013 9 8 0.5354 -2.8256 -0.0005 10 6 0.1901 -4.2359 -0.0012 11 6 -1.3323 -4.3882 -0.0016 12 6 -1.6962 -5.8744 -0.0030 13 16 -3.4971 -6.0545 -0.0042 14 6 -3.6289 -7.8116 -0.0049 15 1 -2.7366 -8.4200 -0.0041 16 6 -4.8794 -8.4138 -0.0053 17 7 -4.9778 -9.7265 -0.0064 18 14 -6.4229 -7.3616 -0.0060 19 1 -6.8313 -7.0826 -1.4062 20 1 -7.5151 -8.0846 0.6936 21 1 -6.1490 -6.0810 0.6943 22 1 -0.3633 0.0006 1.0277 23 1 -0.3634 0.8896 -0.5144 24 1 -0.3634 -0.8904 -0.5132 25 1 4.4645 -1.2138 0.0017 26 1 0.6034 -4.7107 -0.8910 27 1 0.6022 -4.7113 0.8890 28 1 -1.7452 -3.9135 0.8885 29 1 -1.7448 -3.9128 -0.8915 30 1 -1.2833 -6.3487 -0.8933 31 1 -1.2837 -6.3503 0.8867 32 1 -5.8517 -10.1473 -0.0071 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805555590.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:59 Heat of formation + Delta-G solvation = -18.875816 kcal Electronic energy + Delta-G solvation = -17501.187132 eV Core-core repulsion = 14396.588317 eV Total energy + Delta-G solvation = -3104.598815 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.50309 -41.48292 -38.03917 -35.90977 -34.90671 -34.67688 -32.73226 -29.11130 -28.36558 -27.78042 -25.44388 -23.60463 -22.78002 -22.10878 -19.69799 -19.26352 -18.31151 -18.26275 -17.56227 -17.44637 -17.09649 -16.20461 -15.97601 -15.43491 -15.00863 -14.82336 -14.31840 -14.16499 -14.06518 -13.79286 -13.45011 -13.23957 -13.05096 -12.62626 -12.47700 -12.35807 -12.32984 -11.95720 -11.71954 -11.57771 -11.33704 -11.16089 -10.78163 -10.59360 -8.99075 -8.51576 -6.23417 -0.45282 0.89096 1.01424 1.10744 1.32510 1.33836 1.48905 1.58366 1.78761 2.24897 2.66239 2.86824 2.98683 3.46821 3.67248 3.83102 3.85387 3.91525 4.11163 4.27632 4.30511 4.45906 4.52476 4.65902 4.67704 4.84769 4.95875 5.00941 5.20495 5.25697 5.69701 6.11243 6.32391 6.92203 7.09123 8.61490 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.046406 B = 0.003067 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.222220 B = 9128.310792 C = 9700.480894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.247 5.247 3 N -0.061 5.061 4 N -0.302 5.302 5 C 0.043 3.957 6 C -0.072 4.072 7 C 0.555 3.445 8 O -0.507 6.507 9 O -0.345 6.345 10 C 0.079 3.921 11 C -0.088 4.088 12 C -0.077 4.077 13 S -0.204 6.204 14 C -0.525 4.525 15 H 0.051 0.949 16 C 0.036 3.964 17 N -0.924 5.924 18 Si 0.926 3.074 19 H -0.261 1.261 20 H -0.266 1.266 21 H -0.224 1.224 22 H 0.118 0.882 23 H 0.128 0.872 24 H 0.120 0.880 25 H 0.226 0.774 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.182 20.277 0.087 22.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.048 5.048 3 N -0.043 5.043 4 N -0.163 5.163 5 C -0.118 4.118 6 C -0.203 4.203 7 C 0.397 3.603 8 O -0.393 6.393 9 O -0.261 6.261 10 C 0.004 3.996 11 C -0.126 4.126 12 C -0.225 4.225 13 S 0.024 5.976 14 C -0.673 4.673 15 H 0.069 0.931 16 C -0.169 4.169 17 N -0.562 5.562 18 Si 0.747 3.253 19 H -0.186 1.186 20 H -0.191 1.191 21 H -0.147 1.147 22 H 0.136 0.864 23 H 0.146 0.854 24 H 0.139 0.861 25 H 0.243 0.757 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.452 22.106 0.094 24.042 hybrid contribution 0.272 -2.807 -0.031 2.821 sum 9.724 19.298 0.063 21.610 Atomic orbital electron populations 1.23056 0.68770 1.08335 1.07715 1.48238 1.11294 1.02963 1.42278 1.78229 0.97000 1.12136 1.16916 1.75015 1.09495 1.12963 1.18812 1.24343 0.97410 0.90978 0.99046 1.21197 0.92373 0.86993 1.19726 1.19330 0.81464 0.86594 0.72924 1.90941 1.53798 1.48246 1.46333 1.86475 1.24636 1.31298 1.83659 1.23196 0.96073 0.76491 1.03815 1.21171 0.92457 0.93433 1.05532 1.22990 0.95661 0.99550 1.04314 1.83757 1.07872 1.08355 1.97592 1.22371 0.96211 0.90348 1.58371 0.93103 1.25817 1.02317 0.96027 0.92736 1.70045 1.26480 1.10480 1.49184 0.85703 0.78517 0.80812 0.80249 1.18577 1.19104 1.14679 0.86356 0.85354 0.86145 0.75707 0.90181 0.90208 0.89091 0.89074 0.91056 0.91031 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.48 10.91 127.77 1.39 1.87 16 2 N -0.25 -4.05 3.80 -356.82 -1.35 -5.40 16 3 N -0.06 -1.26 13.14 37.02 0.49 -0.77 16 4 N -0.30 -6.67 12.35 -57.47 -0.71 -7.38 16 5 C 0.04 0.80 11.87 84.20 1.00 1.80 16 6 C -0.07 -1.33 6.98 40.37 0.28 -1.05 16 7 C 0.55 11.22 7.94 70.14 0.56 11.78 16 8 O -0.51 -12.79 16.72 19.70 0.33 -12.46 16 9 O -0.34 -6.19 7.85 -57.16 -0.45 -6.64 16 10 C 0.08 1.58 5.48 71.98 0.39 1.97 16 11 C -0.09 -1.98 5.60 30.60 0.17 -1.81 16 12 C -0.08 -2.53 5.67 71.98 0.41 -2.12 16 13 S -0.20 -8.95 19.41 -56.49 -1.10 -10.05 16 14 C -0.53 -29.66 10.04 67.95 0.68 -28.98 16 15 H 0.05 3.14 8.03 -2.91 -0.02 3.12 16 16 C 0.04 2.03 5.50 84.85 0.47 2.49 16 17 N -0.92 -55.71 13.97 21.65 0.30 -55.41 16 18 Si 0.93 42.11 27.74 68.60 1.90 44.01 16 19 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.22 -9.57 6.74 99.48 0.67 -8.90 16 22 H 0.12 0.61 8.14 -2.38 -0.02 0.59 16 23 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 24 H 0.12 0.92 6.29 -2.39 -0.02 0.90 16 25 H 0.23 2.91 8.06 -2.91 -0.02 2.89 16 26 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.07 2.39 8.14 -2.40 -0.02 2.37 16 31 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -70.27 301.73 5.86 -64.41 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: 1.10 Total: 3.73 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 5.36 Total: -14.04 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: -1.27 Total: -68.96 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.12 Total: -19.10 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 1.90 Total: 44.01 kcal Atomic # 16 Polarization: -8.95 SS G_CDS: -1.10 Total: -10.05 kcal Total: -70.27 5.86 -64.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805555590.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.530 kcal (2) G-P(sol) polarization free energy of solvation -70.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds