Wall clock time and date at job start Mon Mar 30 2020 00:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28513 * 124.44299 * 2 1 4 4 C 1.31124 * 109.07525 * 180.02562 * 3 2 1 5 5 C 1.40965 * 105.77072 * 0.02562 * 4 3 2 6 6 C 1.47682 * 127.24388 * 179.97438 * 5 4 3 7 7 O 1.21477 * 119.99665 * 359.97438 * 6 5 4 8 8 O 1.34707 * 120.00178 * 179.97438 * 6 5 4 9 9 C 1.45202 * 117.00062 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47378 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47371 * 179.97438 * 10 9 8 12 12 S 1.81000 * 109.47118 * 180.02562 * 11 10 9 13 13 C 1.76202 * 99.99801 * 179.97438 * 12 11 10 14 14 H 1.07993 * 120.00227 * 359.97438 * 13 12 11 15 15 C 1.38801 * 119.99836 * 180.02562 * 13 12 11 16 16 N 1.31637 * 119.99897 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99870 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47225 * 89.99933 * 17 15 13 19 19 H 1.48500 * 109.47141 * 209.99661 * 17 15 13 20 20 H 1.48496 * 109.47183 * 329.99470 * 17 15 13 21 21 N 1.28593 * 124.43415 * 180.02562 * 2 1 3 22 22 H 1.08999 * 109.47168 * 90.02087 * 1 2 3 23 23 H 1.08998 * 109.47643 * 210.02648 * 1 2 3 24 24 H 1.09007 * 109.47061 * 330.02460 * 1 2 3 25 25 H 1.08000 * 127.11134 * 180.02562 * 4 3 2 26 26 H 1.09000 * 109.47097 * 300.00165 * 9 8 6 27 27 H 1.09000 * 109.47087 * 59.99465 * 9 8 6 28 28 H 1.09000 * 109.47303 * 300.00237 * 10 9 8 29 29 H 1.08997 * 109.46792 * 59.99785 * 10 9 8 30 30 H 1.09000 * 109.47105 * 300.00364 * 11 10 9 31 31 H 1.08997 * 109.47334 * 60.00122 * 11 10 9 32 32 H 0.96996 * 119.99387 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1918 1.0598 0.0000 4 6 3.4562 0.7123 -0.0006 5 6 3.4661 -0.6973 -0.0015 6 6 4.6480 -1.5828 -0.0029 7 8 5.7648 -1.1049 -0.0039 8 8 4.4876 -2.9202 -0.0032 9 6 5.6936 -3.7288 -0.0052 10 6 5.3140 -5.2110 -0.0046 11 6 6.5848 -6.0630 -0.0074 12 16 6.1356 -7.8164 -0.0074 13 6 7.7407 -8.5433 -0.0115 14 1 8.6184 -7.9142 -0.0135 15 6 7.8769 -9.9246 -0.0132 16 7 6.8070 -10.6915 -0.0112 17 14 9.5785 -10.6953 -0.0168 18 1 10.0317 -10.9010 1.3823 19 1 9.5280 -12.0033 -0.7180 20 1 10.5284 -9.7944 -0.7175 21 7 2.1921 -1.0606 -0.0005 22 1 -0.3633 -0.0004 -1.0276 23 1 -0.3634 -0.8897 0.5142 24 1 -0.3633 0.8903 0.5135 25 1 4.3127 1.3701 -0.0003 26 1 6.2803 -3.5040 -0.8959 27 1 6.2828 -3.5046 0.8840 28 1 4.7275 -5.4355 0.8863 29 1 4.7246 -5.4354 -0.8936 30 1 7.1709 -5.8384 -0.8985 31 1 7.1746 -5.8387 0.8814 32 1 6.9023 -11.6568 -0.0120 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805568843.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:16 Heat of formation + Delta-G solvation = 15.306596 kcal Electronic energy + Delta-G solvation = -17108.699118 eV Core-core repulsion = 14005.582564 eV Total energy + Delta-G solvation = -3103.116554 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.07283 -40.29634 -36.76812 -34.28617 -33.56573 -32.99967 -32.43472 -28.74332 -26.77925 -25.54141 -24.46756 -22.51566 -21.37655 -21.09967 -18.08179 -17.68351 -17.48163 -17.33574 -16.60684 -16.50536 -15.20538 -14.81359 -14.65285 -14.43009 -13.59990 -13.55049 -13.33554 -12.78332 -12.75448 -12.40942 -12.08220 -11.43003 -11.34126 -11.14929 -11.00602 -10.98876 -10.86680 -10.82588 -10.64666 -10.29197 -9.89686 -9.63610 -9.06963 -8.34594 -6.55593 -6.24129 -3.95044 0.81776 1.49934 1.66860 2.45920 2.74509 3.21745 3.22472 3.29356 3.47704 3.60738 4.20671 4.42667 4.51133 4.52267 4.76047 4.79726 5.10958 5.13405 5.16793 5.25644 5.38546 5.47667 5.52666 5.78559 5.88225 6.05133 6.14416 6.34907 6.46512 6.67990 7.49489 7.59850 7.74610 8.35619 9.22275 10.84064 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.050482 B = 0.002668 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.515162 B =10493.228464 C =11016.693230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.140 5.140 3 N -0.291 5.291 4 C 0.043 3.957 5 C -0.033 4.033 6 C 0.560 3.440 7 O -0.495 6.495 8 O -0.338 6.338 9 C 0.073 3.927 10 C -0.098 4.098 11 C -0.114 4.114 12 S -0.124 6.124 13 C -0.518 4.518 14 H 0.074 0.926 15 C 0.071 3.929 16 N -0.870 5.870 17 Si 0.920 3.080 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.272 1.272 21 N -0.219 5.219 22 H 0.096 0.904 23 H 0.109 0.891 24 H 0.108 0.892 25 H 0.213 0.787 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.535 21.900 0.083 24.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.044 5.044 3 N -0.130 5.130 4 C -0.141 4.141 5 C -0.194 4.194 6 C 0.401 3.599 7 O -0.380 6.380 8 O -0.253 6.253 9 C -0.002 4.002 10 C -0.136 4.136 11 C -0.263 4.263 12 S 0.104 5.896 13 C -0.666 4.666 14 H 0.092 0.908 15 C -0.138 4.138 16 N -0.505 5.505 17 Si 0.746 3.254 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.197 1.197 21 N -0.069 5.069 22 H 0.115 0.885 23 H 0.128 0.872 24 H 0.126 0.874 25 H 0.229 0.771 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.620 21.291 0.082 25.275 hybrid contribution 3.249 0.055 -0.017 3.249 sum -10.371 21.346 0.065 23.732 Atomic orbital electron populations 1.22339 0.69174 1.06544 1.05689 1.48174 1.09557 0.99218 1.47457 1.74050 1.03564 1.15543 1.19876 1.24890 0.94574 0.92947 1.01647 1.21947 0.90271 0.93401 1.13757 1.19176 0.86061 0.81592 0.73086 1.90887 1.24574 1.76719 1.45862 1.86602 1.38992 1.16753 1.82922 1.23390 0.83816 0.90101 1.02922 1.21288 0.98503 0.89360 1.04488 1.23179 0.98515 1.01183 1.03399 1.84671 1.14423 0.93603 1.96878 1.22699 0.91360 0.93913 1.58621 0.90818 1.25024 0.98060 0.96177 0.94546 1.70023 1.28431 1.04897 1.47171 0.86142 0.82404 0.78461 0.78384 1.20246 1.20753 1.19653 1.74631 1.02893 1.14965 1.14397 0.88510 0.87203 0.87358 0.77077 0.90767 0.90772 0.90244 0.90248 0.91662 0.91665 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.38 11.55 59.84 0.69 1.07 16 2 N -0.14 -1.29 4.34 -16.64 -0.07 -1.37 16 3 N -0.29 -2.87 12.00 30.90 0.37 -2.50 16 4 C 0.04 0.43 12.04 -16.82 -0.20 0.23 16 5 C -0.03 -0.41 7.26 -82.70 -0.60 -1.01 16 6 C 0.56 7.87 7.97 34.59 0.28 8.15 16 7 O -0.49 -7.58 16.74 -19.25 -0.32 -7.90 16 8 O -0.34 -5.02 10.23 -40.51 -0.41 -5.43 16 9 C 0.07 1.06 5.48 37.16 0.20 1.26 16 10 C -0.10 -1.62 5.60 -26.73 -0.15 -1.77 16 11 C -0.11 -2.27 5.67 37.16 0.21 -2.06 16 12 S -0.12 -3.23 21.44 -107.50 -2.30 -5.53 16 13 C -0.52 -14.79 9.50 30.94 0.29 -14.50 16 14 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 15 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 16 N -0.87 -25.94 13.22 55.49 0.73 -25.21 16 17 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 N -0.22 -2.61 12.10 33.41 0.40 -2.20 16 22 H 0.10 0.21 8.14 -51.93 -0.42 -0.22 16 23 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.11 0.18 8.14 -51.92 -0.42 -0.24 16 25 H 0.21 1.49 8.06 -52.49 -0.42 1.07 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 31 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 32 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 308.95 15.07 4.66 4.66 Total: -1.00 -34.54 308.95 -5.12 -39.66 By element: Atomic # 1 Polarization: -0.17 SS G_CDS: -3.77 Total: -3.95 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 0.63 Total: -6.72 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 1.44 Total: -31.28 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.74 Total: -13.33 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -3.23 SS G_CDS: -2.30 Total: -5.53 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.54 -5.12 -39.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805568843.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.966 kcal (2) G-P(sol) polarization free energy of solvation -34.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds