Wall clock time and date at job start Mon Mar 30 2020 00:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34780 * 126.58847 * 2 1 4 4 C 1.36668 * 106.84078 * 179.97438 * 3 2 1 5 5 C 1.47382 * 125.78218 * 180.26552 * 4 3 2 6 6 O 1.21514 * 120.00001 * 359.71336 * 5 4 3 7 7 O 1.34752 * 120.00067 * 179.71384 * 5 4 3 8 8 C 1.45200 * 117.00015 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46831 * 180.02562 * 8 7 5 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 8 7 11 11 S 1.81000 * 109.47191 * 179.97438 * 10 9 8 12 12 C 1.76196 * 99.99961 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00187 * 359.97438 * 12 11 10 14 14 C 1.38794 * 120.00057 * 180.02562 * 12 11 10 15 15 N 1.31627 * 120.00078 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00220 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47084 * 89.99796 * 16 14 12 18 18 H 1.48503 * 109.47384 * 209.99601 * 16 14 12 19 19 H 1.48502 * 109.47069 * 329.99622 * 16 14 12 20 20 N 1.34444 * 108.43273 * 359.97438 * 4 3 2 21 21 N 1.28758 * 109.51532 * 0.02562 * 20 4 3 22 22 H 1.09004 * 109.47227 * 270.02004 * 1 2 3 23 23 H 1.09000 * 109.47264 * 30.02142 * 1 2 3 24 24 H 1.09000 * 109.47375 * 150.01748 * 1 2 3 25 25 H 1.08004 * 126.57750 * 359.97438 * 3 2 1 26 26 H 1.08997 * 109.47072 * 299.99992 * 8 7 5 27 27 H 1.08998 * 109.46941 * 60.00152 * 8 7 5 28 28 H 1.09003 * 109.47341 * 300.00185 * 9 8 7 29 29 H 1.08998 * 109.47372 * 60.00246 * 9 8 7 30 30 H 1.09003 * 109.47018 * 300.00128 * 10 9 8 31 31 H 1.09006 * 109.46911 * 60.00083 * 10 9 8 32 32 H 0.97000 * 120.00310 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2683 1.0822 0.0000 4 6 3.5546 0.6204 0.0006 5 6 4.7697 1.4546 0.0063 6 8 4.6750 2.6660 0.0059 7 8 5.9856 0.8738 0.0121 8 6 7.1380 1.7571 0.0170 9 6 8.4203 0.9225 0.0226 10 6 9.6346 1.8532 0.0283 11 16 11.1516 0.8658 0.0357 12 6 12.3545 2.1532 0.0422 13 1 12.0399 3.1864 0.0405 14 6 13.7066 1.8396 0.0484 15 7 14.0901 0.5805 0.0499 16 14 14.9820 3.2044 0.0545 17 1 15.3134 3.5658 1.4562 18 1 16.2091 2.7384 -0.6399 19 1 14.4373 4.3940 -0.6479 20 7 3.5238 -0.7237 0.0015 21 7 2.3006 -1.1258 0.0010 22 1 -0.3634 0.0004 1.0277 23 1 -0.3634 0.8898 -0.5142 24 1 -0.3634 -0.8901 -0.5135 25 1 1.9555 2.1160 -0.0004 26 1 7.1178 2.3856 -0.8733 27 1 7.1097 2.3863 0.9066 28 1 8.4407 0.2936 0.9127 29 1 8.4483 0.2936 -0.8673 30 1 9.6144 2.4823 -0.8616 31 1 9.6063 2.4818 0.9185 32 1 15.0350 0.3612 0.0546 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808661745.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:01 Heat of formation + Delta-G solvation = 1.838445 kcal Electronic energy + Delta-G solvation = -17031.453999 eV Core-core repulsion = 13927.753421 eV Total energy + Delta-G solvation = -3103.700577 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.60300 -40.16650 -36.69902 -35.12644 -33.43089 -32.41258 -31.48883 -28.54836 -26.67754 -25.48319 -24.08946 -22.67573 -21.31454 -21.06386 -18.49363 -17.43257 -17.10309 -16.92398 -16.30836 -16.25496 -15.08463 -14.79230 -14.63324 -14.46867 -13.86427 -13.81711 -13.37045 -12.79995 -12.72947 -12.42946 -12.08313 -11.61977 -11.29917 -11.11280 -10.96223 -10.93412 -10.84790 -10.77534 -10.62035 -10.24120 -9.75586 -9.60691 -9.04634 -8.30864 -6.52392 -6.21411 -3.92163 0.64506 1.25571 1.54724 2.49472 2.80744 3.23541 3.24287 3.31049 3.56148 3.82978 3.92537 4.23020 4.32421 4.41385 4.54499 4.70361 4.93150 5.14144 5.17413 5.21736 5.26469 5.44862 5.54015 5.82457 5.82807 5.93738 6.19590 6.39921 6.51190 6.72685 7.43959 7.62110 7.72503 8.37993 9.24743 10.86714 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.068434 B = 0.002555 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.055205 B =10957.986490 C =11335.980272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.365 5.365 3 C 0.101 3.899 4 C -0.085 4.085 5 C 0.556 3.444 6 O -0.508 6.508 7 O -0.334 6.334 8 C 0.073 3.927 9 C -0.099 4.099 10 C -0.114 4.114 11 S -0.123 6.123 12 C -0.518 4.518 13 H 0.073 0.927 14 C 0.071 3.929 15 N -0.869 5.869 16 Si 0.920 3.080 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 N -0.176 5.176 21 N -0.062 5.062 22 H 0.092 0.908 23 H 0.099 0.901 24 H 0.103 0.897 25 H 0.210 0.790 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.363 1.504 -0.147 28.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.148 5.148 3 C -0.056 4.056 4 C -0.222 4.222 5 C 0.398 3.602 6 O -0.396 6.396 7 O -0.249 6.249 8 C -0.002 4.002 9 C -0.137 4.137 10 C -0.262 4.262 11 S 0.105 5.895 12 C -0.666 4.666 13 H 0.092 0.908 14 C -0.138 4.138 15 N -0.505 5.505 16 Si 0.746 3.254 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.197 1.197 20 N -0.051 5.051 21 N -0.044 5.044 22 H 0.110 0.890 23 H 0.118 0.882 24 H 0.122 0.878 25 H 0.226 0.774 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -28.031 -0.908 -0.150 28.046 hybrid contribution 0.462 3.391 0.021 3.423 sum -27.569 2.483 -0.129 27.681 Atomic orbital electron populations 1.22251 0.72135 1.06022 1.05021 1.50455 1.09383 1.05635 1.49360 1.23339 0.89750 0.95259 0.97271 1.20363 0.92192 0.90406 1.19233 1.19355 0.82928 0.85218 0.72723 1.90877 1.87638 1.14180 1.46896 1.86627 1.14140 1.41321 1.82827 1.23361 0.81904 0.92179 1.02748 1.21291 0.89624 0.98205 1.04586 1.23179 0.98379 1.01352 1.03317 1.84695 0.94795 1.13165 1.96862 1.22698 0.92153 0.93155 1.58593 0.90848 1.25021 0.97854 0.96361 0.94594 1.70019 1.16600 1.16695 1.47152 0.86148 0.79933 0.80970 0.78364 1.20267 1.20765 1.19676 1.74844 1.12230 1.09899 1.08114 1.82123 0.93396 1.06333 1.22502 0.88961 0.88212 0.87822 0.77362 0.90901 0.90898 0.90195 0.90189 0.91717 0.91720 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.12 11.51 59.84 0.69 0.81 16 2 N -0.36 -2.57 4.03 -67.85 -0.27 -2.85 16 3 C 0.10 0.77 11.31 -16.82 -0.19 0.58 16 4 C -0.08 -1.02 7.02 -83.57 -0.59 -1.60 16 5 C 0.56 7.80 7.96 34.45 0.27 8.07 16 6 O -0.51 -7.57 16.65 -19.28 -0.32 -7.89 16 7 O -0.33 -5.15 10.23 -40.63 -0.42 -5.57 16 8 C 0.07 1.09 5.48 37.16 0.20 1.30 16 9 C -0.10 -1.68 5.60 -26.73 -0.15 -1.83 16 10 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 11 S -0.12 -3.26 21.44 -107.50 -2.30 -5.56 16 12 C -0.52 -14.93 9.50 30.94 0.29 -14.63 16 13 H 0.07 2.04 7.80 -52.48 -0.41 1.63 16 14 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 15 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 16 Si 0.92 21.67 29.55 -169.99 -5.02 16.65 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 20 N -0.18 -2.40 12.39 32.83 0.41 -2.00 16 21 N -0.06 -0.71 13.78 60.35 0.83 0.12 16 22 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 23 H 0.10 -0.12 8.14 -51.93 -0.42 -0.54 16 24 H 0.10 0.09 8.14 -51.93 -0.42 -0.34 16 25 H 0.21 0.78 8.06 -52.48 -0.42 0.36 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 31 H 0.06 1.28 8.14 -51.91 -0.42 0.86 16 32 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 309.60 15.07 4.67 4.67 Total: -1.00 -35.76 309.60 -4.82 -40.58 By element: Atomic # 1 Polarization: -1.50 SS G_CDS: -3.77 Total: -5.27 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 0.65 Total: -7.47 kcal Atomic # 7 Polarization: -31.83 SS G_CDS: 1.70 Total: -30.13 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.74 Total: -13.46 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -3.26 SS G_CDS: -2.30 Total: -5.56 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.76 -4.82 -40.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808661745.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.420 kcal (2) G-P(sol) polarization free energy of solvation -35.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds