Wall clock time and date at job start Mon Mar 30 2020 00:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34780 * 126.58847 * 2 1 4 4 C 1.36668 * 106.84078 * 179.97438 * 3 2 1 5 5 C 1.47382 * 125.78218 * 180.26552 * 4 3 2 6 6 O 1.21514 * 120.00001 * 359.71336 * 5 4 3 7 7 O 1.34752 * 120.00067 * 179.71384 * 5 4 3 8 8 C 1.45200 * 117.00015 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46831 * 180.02562 * 8 7 5 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 8 7 11 11 S 1.81000 * 109.47191 * 179.97438 * 10 9 8 12 12 C 1.76196 * 99.99961 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00187 * 359.97438 * 12 11 10 14 14 C 1.38794 * 120.00057 * 180.02562 * 12 11 10 15 15 N 1.31627 * 120.00078 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00220 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47084 * 89.99796 * 16 14 12 18 18 H 1.48503 * 109.47384 * 209.99601 * 16 14 12 19 19 H 1.48502 * 109.47069 * 329.99622 * 16 14 12 20 20 N 1.34444 * 108.43273 * 359.97438 * 4 3 2 21 21 N 1.28758 * 109.51532 * 0.02562 * 20 4 3 22 22 H 1.09004 * 109.47227 * 270.02004 * 1 2 3 23 23 H 1.09000 * 109.47264 * 30.02142 * 1 2 3 24 24 H 1.09000 * 109.47375 * 150.01748 * 1 2 3 25 25 H 1.08004 * 126.57750 * 359.97438 * 3 2 1 26 26 H 1.08997 * 109.47072 * 299.99992 * 8 7 5 27 27 H 1.08998 * 109.46941 * 60.00152 * 8 7 5 28 28 H 1.09003 * 109.47341 * 300.00185 * 9 8 7 29 29 H 1.08998 * 109.47372 * 60.00246 * 9 8 7 30 30 H 1.09003 * 109.47018 * 300.00128 * 10 9 8 31 31 H 1.09006 * 109.46911 * 60.00083 * 10 9 8 32 32 H 0.97000 * 120.00310 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2683 1.0822 0.0000 4 6 3.5546 0.6204 0.0006 5 6 4.7697 1.4546 0.0063 6 8 4.6750 2.6660 0.0059 7 8 5.9856 0.8738 0.0121 8 6 7.1380 1.7571 0.0170 9 6 8.4203 0.9225 0.0226 10 6 9.6346 1.8532 0.0283 11 16 11.1516 0.8658 0.0357 12 6 12.3545 2.1532 0.0422 13 1 12.0399 3.1864 0.0405 14 6 13.7066 1.8396 0.0484 15 7 14.0901 0.5805 0.0499 16 14 14.9820 3.2044 0.0545 17 1 15.3134 3.5658 1.4562 18 1 16.2091 2.7384 -0.6399 19 1 14.4373 4.3940 -0.6479 20 7 3.5238 -0.7237 0.0015 21 7 2.3006 -1.1258 0.0010 22 1 -0.3634 0.0004 1.0277 23 1 -0.3634 0.8898 -0.5142 24 1 -0.3634 -0.8901 -0.5135 25 1 1.9555 2.1160 -0.0004 26 1 7.1178 2.3856 -0.8733 27 1 7.1097 2.3863 0.9066 28 1 8.4407 0.2936 0.9127 29 1 8.4483 0.2936 -0.8673 30 1 9.6144 2.4823 -0.8616 31 1 9.6063 2.4818 0.9185 32 1 15.0350 0.3612 0.0546 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808661745.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:01 Heat of formation + Delta-G solvation = -22.847962 kcal Electronic energy + Delta-G solvation = -17032.524482 eV Core-core repulsion = 13927.753421 eV Total energy + Delta-G solvation = -3104.771060 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.33072 -41.25944 -37.85001 -35.70804 -34.86640 -34.56841 -32.26117 -29.04051 -28.12537 -27.44244 -25.09319 -23.30121 -22.72750 -21.99058 -19.64595 -19.19242 -18.19545 -17.90374 -17.06616 -17.02790 -16.88881 -16.16146 -15.89679 -15.74245 -15.05517 -14.41042 -14.35918 -13.93183 -13.91434 -13.80166 -13.22314 -13.09199 -12.93823 -12.62093 -12.40581 -12.39702 -12.29965 -11.93595 -11.51688 -11.47771 -11.40631 -11.13842 -10.51171 -10.34182 -8.67558 -8.36741 -6.13716 -0.00735 0.34491 1.01961 1.30045 1.40979 1.44843 1.53369 1.83159 1.85954 2.28220 2.97646 3.07312 3.29970 3.44595 3.77878 3.80508 3.86662 3.97990 4.16600 4.32275 4.35339 4.39667 4.54925 4.67908 4.70158 4.72666 5.02647 5.09670 5.33532 5.37891 5.41016 6.19027 6.46785 6.86175 7.05353 8.72694 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.068434 B = 0.002555 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.055205 B =10957.986490 C =11335.980272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.348 5.348 3 C 0.130 3.870 4 C -0.119 4.119 5 C 0.558 3.442 6 O -0.521 6.521 7 O -0.350 6.350 8 C 0.081 3.919 9 C -0.088 4.088 10 C -0.089 4.089 11 S -0.191 6.191 12 C -0.538 4.538 13 H 0.076 0.924 14 C 0.013 3.987 15 N -0.908 5.908 16 Si 0.996 3.004 17 H -0.268 1.268 18 H -0.275 1.275 19 H -0.262 1.262 20 N -0.217 5.217 21 N -0.089 5.089 22 H 0.111 0.889 23 H 0.135 0.865 24 H 0.109 0.891 25 H 0.252 0.748 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.403 3.480 -0.155 30.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.132 5.132 3 C -0.029 4.029 4 C -0.257 4.257 5 C 0.401 3.599 6 O -0.409 6.409 7 O -0.265 6.265 8 C 0.006 3.994 9 C -0.127 4.127 10 C -0.237 4.237 11 S 0.037 5.963 12 C -0.686 4.686 13 H 0.094 0.906 14 C -0.192 4.192 15 N -0.544 5.544 16 Si 0.818 3.182 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.186 1.186 20 N -0.091 5.091 21 N -0.071 5.071 22 H 0.129 0.871 23 H 0.154 0.846 24 H 0.128 0.872 25 H 0.268 0.732 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -30.118 1.040 -0.157 30.137 hybrid contribution 0.857 2.762 0.026 2.892 sum -29.261 3.802 -0.131 29.508 Atomic orbital electron populations 1.22827 0.68680 1.08156 1.06928 1.50847 1.11042 1.04402 1.46874 1.23922 0.88036 0.96790 0.94133 1.20450 0.92916 0.90174 1.22161 1.19640 0.82831 0.85389 0.72050 1.90855 1.87703 1.14549 1.47814 1.86607 1.14863 1.41791 1.83251 1.23145 0.81083 0.91541 1.03647 1.21110 0.89593 0.97718 1.04266 1.23047 0.95931 1.00840 1.03927 1.84728 0.98584 1.15885 1.97067 1.23053 0.93146 0.93499 1.58887 0.90583 1.26102 1.00187 0.99101 0.93768 1.70157 1.17292 1.19024 1.47942 0.84980 0.76762 0.77601 0.78828 1.19271 1.19994 1.18616 1.74810 1.13662 1.11083 1.09582 1.82009 0.93367 1.08151 1.23533 0.87064 0.84638 0.87221 0.73175 0.90006 0.90001 0.90581 0.90572 0.91013 0.90997 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.05 11.51 127.77 1.47 1.42 16 2 N -0.35 -4.05 4.03 -368.56 -1.49 -5.54 16 3 C 0.13 1.63 11.31 83.87 0.95 2.58 16 4 C -0.12 -2.76 7.02 40.78 0.29 -2.48 16 5 C 0.56 15.29 7.96 70.23 0.56 15.85 16 6 O -0.52 -14.79 16.65 19.79 0.33 -14.46 16 7 O -0.35 -10.75 10.23 -56.62 -0.58 -11.33 16 8 C 0.08 2.36 5.48 71.98 0.39 2.75 16 9 C -0.09 -3.00 5.60 30.60 0.17 -2.83 16 10 C -0.09 -3.57 5.67 71.98 0.41 -3.17 16 11 S -0.19 -10.33 21.44 -56.49 -1.21 -11.54 16 12 C -0.54 -31.27 9.50 67.95 0.65 -30.62 16 13 H 0.08 4.22 7.80 -2.91 -0.02 4.20 16 14 C 0.01 0.76 5.49 84.86 0.47 1.23 16 15 N -0.91 -55.39 13.22 21.65 0.29 -55.11 16 16 Si 1.00 44.25 29.55 68.60 2.03 46.28 16 17 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 20 N -0.22 -5.96 12.39 -50.03 -0.62 -6.58 16 21 N -0.09 -1.98 13.78 37.02 0.51 -1.47 16 22 H 0.11 -0.40 8.14 -2.38 -0.02 -0.42 16 23 H 0.14 -0.98 8.14 -2.39 -0.02 -1.00 16 24 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 25 H 0.25 0.76 8.06 -2.91 -0.02 0.74 16 26 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 31 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -79.74 309.60 5.74 -74.00 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: 1.13 Total: 1.01 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 5.35 Total: -15.27 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: -1.31 Total: -68.70 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.25 Total: -25.78 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: -10.33 SS G_CDS: -1.21 Total: -11.54 kcal Total: -79.74 5.74 -74.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808661745.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.156 kcal (2) G-P(sol) polarization free energy of solvation -79.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds