Wall clock time and date at job start Mon Mar 30 2020 01:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36879 * 126.40132 * 2 1 4 4 Cl 1.73602 * 126.59620 * 0.22078 * 3 2 1 5 5 C 1.34794 * 106.80268 * 179.97438 * 3 2 1 6 6 N 1.34162 * 108.01564 * 359.97438 * 5 3 2 7 7 C 1.30471 * 109.27129 * 0.02562 * 6 5 3 8 8 C 1.50704 * 125.64681 * 179.97438 * 7 6 5 9 9 N 1.46504 * 109.46714 * 90.02102 * 8 7 6 10 10 C 1.34775 * 119.99559 * 180.02562 * 9 8 7 11 11 O 1.21283 * 120.00061 * 359.97438 * 10 9 8 12 12 C 1.50694 * 120.00019 * 179.97438 * 10 9 8 13 13 C 1.53004 * 109.47468 * 179.97438 * 12 10 9 14 14 C 1.50694 * 109.47468 * 179.97438 * 13 12 10 15 15 H 1.07999 * 120.00138 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00210 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99873 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00180 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47111 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47184 * 119.99883 * 18 16 14 21 21 H 1.48503 * 109.46933 * 239.99849 * 18 16 14 22 22 H 1.08997 * 109.47331 * 90.02356 * 1 2 3 23 23 H 1.08997 * 109.47281 * 210.02850 * 1 2 3 24 24 H 1.09001 * 109.47031 * 330.02820 * 1 2 3 25 25 H 1.07999 * 125.99040 * 179.97438 * 5 3 2 26 26 H 1.08993 * 109.46868 * 210.01986 * 8 7 6 27 27 H 1.08995 * 109.46781 * 330.02415 * 8 7 6 28 28 H 0.96991 * 120.00441 * 359.97438 * 9 8 7 29 29 H 1.09001 * 109.47381 * 300.00093 * 12 10 9 30 30 H 1.08999 * 109.47393 * 60.00057 * 12 10 9 31 31 H 1.09009 * 109.46782 * 300.00136 * 13 12 10 32 32 H 1.09003 * 109.47219 * 59.99693 * 13 12 10 33 33 H 0.97007 * 120.00186 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1017 0.0000 4 17 1.7697 2.7618 0.0054 5 6 3.5472 0.6496 0.0006 6 7 3.5101 -0.6915 0.0015 7 6 2.2671 -1.0880 0.0010 8 6 1.8024 -2.5216 0.0011 9 7 1.6507 -2.9855 1.3824 10 6 1.2424 -4.2461 1.6288 11 8 1.0002 -4.9962 0.7071 12 6 1.0868 -4.7236 3.0496 13 6 0.6150 -6.1790 3.0499 14 6 0.4600 -6.6567 4.4707 15 1 0.6768 -5.9892 5.2915 16 6 0.0414 -7.9459 4.7228 17 7 -0.2231 -8.7587 3.7233 18 14 -0.1513 -8.5379 6.4841 19 1 0.2056 -7.4393 7.4173 20 1 -1.5594 -8.9482 6.7171 21 1 0.7472 -9.6969 6.7179 22 1 -0.3634 -0.0004 -1.0276 23 1 -0.3634 -0.8897 0.5143 24 1 -0.3633 0.8902 0.5134 25 1 4.4382 1.2599 0.0003 26 1 0.8443 -2.5929 -0.5135 27 1 2.5375 -3.1417 -0.5118 28 1 1.8447 -2.3858 2.1196 29 1 2.0451 -4.6519 3.5641 30 1 0.3517 -4.1037 3.5629 31 1 -0.3435 -6.2503 2.5356 32 1 1.3497 -6.7993 2.5365 33 1 -0.5172 -9.6659 3.9006 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812495970.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:26 Heat of formation + Delta-G solvation = -14.715053 kcal Electronic energy + Delta-G solvation = -17701.126993 eV Core-core repulsion = 14594.664896 eV Total energy + Delta-G solvation = -3106.462097 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.39442 -40.64319 -37.87918 -36.09656 -35.50881 -35.21964 -33.08423 -31.30168 -28.50958 -27.94846 -26.62541 -23.54707 -22.69948 -21.53037 -21.05456 -18.89631 -18.44725 -17.55952 -17.31414 -16.78467 -16.66507 -16.32602 -16.04754 -15.20065 -14.78405 -14.65132 -14.20554 -14.10951 -14.00697 -13.69165 -13.53036 -13.20665 -12.99917 -12.83079 -12.57103 -12.43615 -11.90341 -11.62388 -11.26783 -11.23562 -10.86535 -10.82655 -10.56073 -10.21545 -9.52528 -8.16432 -6.29816 0.45287 0.52086 1.43737 1.44772 1.57892 1.63772 1.68913 1.78032 2.36748 2.48569 3.08588 3.16941 3.66241 3.75339 4.02601 4.23730 4.32600 4.35587 4.48408 4.54305 4.58450 4.61908 4.90505 5.09081 5.27941 5.35065 5.53097 5.66750 5.75426 5.88160 6.20042 6.48636 6.73689 6.88919 7.26626 7.40351 8.96266 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.039735 B = 0.002991 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.498242 B = 9358.108948 C = 9558.040437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.440 5.440 3 C 0.018 3.982 4 Cl 0.013 6.987 5 C -0.006 4.006 6 N -0.491 5.491 7 C 0.202 3.798 8 C 0.211 3.789 9 N -0.716 5.716 10 C 0.520 3.480 11 O -0.580 6.580 12 C -0.119 4.119 13 C 0.041 3.959 14 C -0.542 4.542 15 H 0.075 0.925 16 C -0.007 4.007 17 N -0.937 5.937 18 Si 0.972 3.028 19 H -0.254 1.254 20 H -0.280 1.280 21 H -0.282 1.282 22 H 0.100 0.900 23 H 0.101 0.899 24 H 0.106 0.894 25 H 0.201 0.799 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.414 0.586 29 H 0.102 0.898 30 H 0.107 0.893 31 H -0.013 1.013 32 H -0.017 1.017 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.436 25.881 -6.371 26.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.124 5.124 3 C -0.124 4.124 4 Cl 0.041 6.959 5 C -0.156 4.156 6 N -0.211 5.211 7 C -0.060 4.060 8 C 0.086 3.914 9 N -0.371 5.371 10 C 0.309 3.691 11 O -0.459 6.459 12 C -0.158 4.158 13 C 0.004 3.996 14 C -0.579 4.579 15 H 0.093 0.907 16 C -0.204 4.204 17 N -0.577 5.577 18 Si 0.796 3.204 19 H -0.177 1.177 20 H -0.206 1.206 21 H -0.208 1.208 22 H 0.119 0.881 23 H 0.120 0.880 24 H 0.124 0.876 25 H 0.218 0.782 26 H 0.113 0.887 27 H 0.106 0.894 28 H 0.250 0.750 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.005 0.995 32 H 0.002 0.998 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.652 24.825 -7.086 25.953 hybrid contribution -0.806 0.275 0.713 1.110 sum 1.846 25.100 -6.373 25.962 Atomic orbital electron populations 1.22527 0.73707 1.06599 1.05887 1.45321 1.09244 1.04803 1.53038 1.21973 0.91232 0.83367 1.15807 1.98400 1.91535 1.08584 1.97348 1.22624 0.95822 0.90449 1.06734 1.70408 1.19168 1.12164 1.19330 1.22806 0.85738 0.90110 1.07364 1.19396 1.02315 0.84756 0.84910 1.45895 1.69621 1.13361 1.08235 1.21257 0.74693 0.80790 0.92374 1.90681 1.51421 1.55882 1.47882 1.21639 1.04215 0.98599 0.91393 1.18705 0.94543 0.90849 0.95544 1.21746 1.44971 0.97990 0.93241 0.90711 1.26105 0.95019 0.97246 1.02032 1.70175 1.46917 1.07128 1.33467 0.85302 0.77625 0.78483 0.79005 1.17703 1.20608 1.20781 0.88128 0.88042 0.87557 0.78231 0.88698 0.89356 0.75014 0.88005 0.87480 0.99471 0.99844 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.56 10.66 127.77 1.36 1.92 16 2 N -0.44 -7.44 3.16 -526.50 -1.66 -9.10 16 3 C 0.02 0.31 7.49 83.11 0.62 0.93 16 4 Cl 0.01 0.17 28.93 -2.72 -0.08 0.09 16 5 C -0.01 -0.11 11.86 83.55 0.99 0.88 16 6 N -0.49 -12.00 11.25 -187.94 -2.11 -14.12 16 7 C 0.20 4.34 7.27 138.10 1.00 5.35 16 8 C 0.21 4.97 5.76 85.63 0.49 5.46 16 9 N -0.72 -18.45 5.55 -466.79 -2.59 -21.04 16 10 C 0.52 18.95 7.83 87.66 0.69 19.64 16 11 O -0.58 -26.83 15.98 -3.04 -0.05 -26.88 16 12 C -0.12 -4.58 5.64 29.85 0.17 -4.41 16 13 C 0.04 2.25 4.26 29.85 0.13 2.37 16 14 C -0.54 -30.42 9.11 25.60 0.23 -30.19 16 15 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 16 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 17 N -0.94 -58.89 13.29 21.45 0.28 -58.60 16 18 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 19 H -0.25 -10.59 7.11 99.48 0.71 -9.89 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 23 H 0.10 1.05 7.66 -2.39 -0.02 1.03 16 24 H 0.11 0.80 7.92 -2.39 -0.02 0.78 16 25 H 0.20 2.84 8.06 -2.91 -0.02 2.82 16 26 H 0.09 2.03 7.71 -2.39 -0.02 2.01 16 27 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.41 8.64 8.46 -92.72 -0.78 7.86 16 29 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 30 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 31 H -0.01 -0.80 8.10 -2.38 -0.02 -0.82 16 32 H -0.02 -1.05 8.10 -2.39 -0.02 -1.07 16 33 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -76.18 308.98 2.32 -73.86 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 0.35 Total: 7.74 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 6.15 Total: 2.04 kcal Atomic # 7 Polarization: -96.78 SS G_CDS: -6.08 Total: -102.86 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.05 Total: -26.88 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 17 Polarization: 0.17 SS G_CDS: -0.08 Total: 0.09 kcal Total: -76.18 2.32 -73.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812495970.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.147 kcal (2) G-P(sol) polarization free energy of solvation -76.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds