Wall clock time and date at job start Mon Mar 30 2020 01:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99990 * 2 1 4 4 H 1.48499 * 109.47181 * 269.99539 * 3 2 1 5 5 H 1.48496 * 109.47242 * 30.00096 * 3 2 1 6 6 H 1.48505 * 109.47026 * 150.00229 * 3 2 1 7 7 C 1.37876 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00027 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47408 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47440 * 180.02562 * 10 9 7 12 12 O 1.20826 * 119.99674 * 359.97438 * 11 10 9 13 13 O 1.34270 * 120.00329 * 179.97438 * 11 10 9 14 14 C 1.35806 * 117.00579 * 185.53072 * 13 11 10 15 15 C 1.37726 * 120.30448 * 261.85033 * 14 13 11 16 16 C 1.39155 * 120.64967 * 179.71792 * 15 14 13 17 17 C 1.36157 * 121.15039 * 0.58547 * 16 15 14 18 18 C 1.40518 * 120.01206 * 359.69753 * 17 16 15 19 19 N 1.33735 * 120.98884 * 180.02562 * 18 17 16 20 20 C 1.31109 * 121.31660 * 180.02562 * 19 18 17 21 21 C 1.39278 * 121.74274 * 359.97438 * 20 19 18 22 22 C 1.36647 * 119.91959 * 0.02562 * 21 20 19 23 23 C 1.40603 * 118.16984 * 0.02562 * 22 21 20 24 24 H 0.97002 * 119.99783 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46806 * 60.00609 * 9 7 2 26 26 H 1.08999 * 109.47405 * 300.00524 * 9 7 2 27 27 H 1.08993 * 109.47027 * 60.00048 * 10 9 7 28 28 H 1.09007 * 109.46914 * 300.00246 * 10 9 7 29 29 H 1.07996 * 119.67574 * 0.02562 * 15 14 13 30 30 H 1.08003 * 119.42560 * 180.28144 * 16 15 14 31 31 H 1.07992 * 119.99459 * 179.67728 * 17 16 15 32 32 H 1.07999 * 119.12693 * 180.02562 * 20 19 18 33 33 H 1.07993 * 120.03970 * 179.97438 * 21 20 19 34 34 H 1.08005 * 120.91551 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4917 -4.9672 -0.0012 12 8 0.2835 -4.9671 -0.0011 13 8 2.1630 -6.1301 -0.0018 14 6 1.4283 -7.2662 -0.1190 15 6 1.0952 -7.9969 1.0000 16 6 0.3377 -9.1589 0.8888 17 6 -0.0839 -9.6114 -0.3242 18 6 0.2392 -8.8988 -1.4913 19 7 -0.1652 -9.3252 -2.6926 20 6 0.1329 -8.6656 -3.7858 21 6 0.8823 -7.4921 -3.7521 22 6 1.3269 -7.0014 -2.5568 23 6 1.0060 -7.7121 -1.3869 24 1 -0.4850 0.8401 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 2.8718 -3.6044 0.8894 28 1 2.8719 -3.6043 -0.8906 29 1 1.4209 -7.6620 1.9737 30 1 0.0840 -9.7141 1.7797 31 1 -0.6665 -10.5184 -0.3893 32 1 -0.2123 -9.0418 -4.7374 33 1 1.1124 -6.9711 -4.6696 34 1 1.9095 -6.0930 -2.5121 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812905332.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:23 Heat of formation + Delta-G solvation = -31.035963 kcal Electronic energy + Delta-G solvation = -19553.863048 eV Core-core repulsion = 16416.833321 eV Total energy + Delta-G solvation = -3137.029726 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.50258 -40.07417 -37.41447 -36.31242 -33.69711 -33.17168 -31.29909 -30.73191 -29.62513 -26.29584 -24.50668 -23.81464 -23.27014 -21.46469 -20.05179 -18.60259 -17.83701 -17.33105 -17.12168 -16.28326 -15.72092 -15.57917 -14.81174 -14.54092 -14.41708 -14.37371 -13.57482 -13.21834 -13.18291 -12.84402 -12.37734 -12.12194 -11.86349 -11.75197 -11.34208 -11.02134 -10.86518 -10.70476 -10.57355 -10.17315 -10.14046 -9.76177 -9.66492 -9.26852 -8.94704 -8.44578 -8.23191 -6.08012 -4.13770 0.16667 0.66841 1.73589 2.53836 2.64968 3.16507 3.27522 3.34329 3.36972 3.98975 4.12214 4.38459 4.55943 4.58921 4.63548 4.82703 4.94087 5.07860 5.24612 5.27637 5.29449 5.64418 5.75636 5.81053 5.89413 5.96125 6.05792 6.17148 6.20543 6.30442 6.50425 6.67113 6.83420 7.57454 7.61935 7.73693 7.89451 8.12791 8.28436 8.92949 9.50976 11.02879 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.029282 B = 0.004000 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.985576 B = 6998.642825 C = 7495.810783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.531 4.531 8 H 0.060 0.940 9 C 0.033 3.967 10 C -0.100 4.100 11 C 0.451 3.549 12 O -0.481 6.481 13 O -0.304 6.304 14 C 0.118 3.882 15 C -0.122 4.122 16 C -0.085 4.085 17 C -0.098 4.098 18 C 0.137 3.863 19 N -0.476 5.476 20 C 0.135 3.865 21 C -0.175 4.175 22 C -0.045 4.045 23 C -0.110 4.110 24 H 0.263 0.737 25 H 0.026 0.974 26 H 0.027 0.973 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.161 0.839 33 H 0.141 0.859 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.394 -18.163 -3.243 18.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.569 4.569 8 H 0.078 0.922 9 C -0.004 4.004 10 C -0.138 4.138 11 C 0.295 3.705 12 O -0.364 6.364 13 O -0.221 6.221 14 C 0.075 3.925 15 C -0.140 4.140 16 C -0.105 4.105 17 C -0.117 4.117 18 C 0.016 3.984 19 N -0.184 5.184 20 C -0.038 4.038 21 C -0.195 4.195 22 C -0.071 4.071 23 C -0.113 4.113 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.155 0.845 30 H 0.156 0.844 31 H 0.157 0.843 32 H 0.179 0.821 33 H 0.159 0.841 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.330 -18.829 -3.151 19.233 hybrid contribution 0.845 1.745 0.003 1.938 sum 3.174 -17.085 -3.148 17.660 Atomic orbital electron populations 1.69989 1.06133 1.26895 1.49632 1.25015 0.94849 0.99379 0.94971 0.86529 0.79773 0.83133 0.78180 1.20555 1.21135 1.19734 1.21116 0.93085 0.90476 1.52220 0.92208 1.19051 0.93173 0.89170 0.99035 1.21862 1.00795 0.86672 1.04422 1.25406 0.88316 0.84847 0.71907 1.90691 1.15640 1.86722 1.43327 1.84701 1.39828 1.13355 1.84202 1.18475 0.94852 0.87109 0.92017 1.21271 0.98192 0.96405 0.98146 1.20729 0.96411 0.95403 0.97952 1.20792 1.00483 1.00139 0.90281 1.18721 0.95030 0.92001 0.92616 1.68106 1.20378 1.32092 0.97840 1.22985 0.92713 0.91151 0.96914 1.21891 1.00361 0.98205 0.99065 1.21435 0.95793 0.98276 0.91619 1.18970 1.00668 0.97638 0.93974 0.92753 0.95539 0.95463 0.88460 0.88602 0.84540 0.84442 0.84329 0.82146 0.84105 0.84398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.53 -14.44 9.11 -34.44 -0.31 -14.76 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.03 0.84 4.26 -27.88 -0.12 0.72 16 10 C -0.10 -1.95 5.75 -27.88 -0.16 -2.11 16 11 C 0.45 8.72 7.29 36.00 0.26 8.98 16 12 O -0.48 -10.96 15.73 -18.75 -0.29 -11.26 16 13 O -0.30 -5.10 9.41 -23.26 -0.22 -5.32 16 14 C 0.12 1.89 4.96 -38.77 -0.19 1.69 16 15 C -0.12 -1.63 9.95 -39.43 -0.39 -2.02 16 16 C -0.09 -0.95 9.93 -39.99 -0.40 -1.35 16 17 C -0.10 -1.20 9.97 -39.47 -0.39 -1.59 16 18 C 0.14 2.02 6.60 -84.87 -0.56 1.46 16 19 N -0.48 -6.60 10.34 -10.99 -0.11 -6.71 16 20 C 0.13 1.54 11.14 -17.47 -0.19 1.34 16 21 C -0.18 -2.03 10.03 -39.77 -0.40 -2.43 16 22 C -0.05 -0.65 9.45 -39.27 -0.37 -1.02 16 23 C -0.11 -1.72 5.75 -106.69 -0.61 -2.34 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 26 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 27 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 28 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 29 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 31 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.14 1.91 7.37 -52.48 -0.39 1.53 16 LS Contribution 305.46 15.07 4.60 4.60 Total: -1.00 -33.30 305.46 -7.98 -41.28 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -3.73 Total: -0.95 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -3.94 Total: -11.83 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.62 Total: -32.53 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.51 Total: -16.58 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.30 -7.98 -41.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812905332.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.244 kcal (2) G-P(sol) polarization free energy of solvation -33.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds