Wall clock time and date at job start Mon Mar 30 2020 01:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99990 * 2 1 4 4 H 1.48499 * 109.47181 * 269.99539 * 3 2 1 5 5 H 1.48496 * 109.47242 * 30.00096 * 3 2 1 6 6 H 1.48505 * 109.47026 * 150.00229 * 3 2 1 7 7 C 1.37876 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00027 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47408 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47440 * 180.02562 * 10 9 7 12 12 O 1.20826 * 119.99674 * 359.97438 * 11 10 9 13 13 O 1.34270 * 120.00329 * 179.97438 * 11 10 9 14 14 C 1.35806 * 117.00579 * 185.53072 * 13 11 10 15 15 C 1.37726 * 120.30448 * 261.85033 * 14 13 11 16 16 C 1.39155 * 120.64967 * 179.71792 * 15 14 13 17 17 C 1.36157 * 121.15039 * 0.58547 * 16 15 14 18 18 C 1.40518 * 120.01206 * 359.69753 * 17 16 15 19 19 N 1.33735 * 120.98884 * 180.02562 * 18 17 16 20 20 C 1.31109 * 121.31660 * 180.02562 * 19 18 17 21 21 C 1.39278 * 121.74274 * 359.97438 * 20 19 18 22 22 C 1.36647 * 119.91959 * 0.02562 * 21 20 19 23 23 C 1.40603 * 118.16984 * 0.02562 * 22 21 20 24 24 H 0.97002 * 119.99783 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46806 * 60.00609 * 9 7 2 26 26 H 1.08999 * 109.47405 * 300.00524 * 9 7 2 27 27 H 1.08993 * 109.47027 * 60.00048 * 10 9 7 28 28 H 1.09007 * 109.46914 * 300.00246 * 10 9 7 29 29 H 1.07996 * 119.67574 * 0.02562 * 15 14 13 30 30 H 1.08003 * 119.42560 * 180.28144 * 16 15 14 31 31 H 1.07992 * 119.99459 * 179.67728 * 17 16 15 32 32 H 1.07999 * 119.12693 * 180.02562 * 20 19 18 33 33 H 1.07993 * 120.03970 * 179.97438 * 21 20 19 34 34 H 1.08005 * 120.91551 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4917 -4.9672 -0.0012 12 8 0.2835 -4.9671 -0.0011 13 8 2.1630 -6.1301 -0.0018 14 6 1.4283 -7.2662 -0.1190 15 6 1.0952 -7.9969 1.0000 16 6 0.3377 -9.1589 0.8888 17 6 -0.0839 -9.6114 -0.3242 18 6 0.2392 -8.8988 -1.4913 19 7 -0.1652 -9.3252 -2.6926 20 6 0.1329 -8.6656 -3.7858 21 6 0.8823 -7.4921 -3.7521 22 6 1.3269 -7.0014 -2.5568 23 6 1.0060 -7.7121 -1.3869 24 1 -0.4850 0.8401 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 2.8718 -3.6044 0.8894 28 1 2.8719 -3.6043 -0.8906 29 1 1.4209 -7.6620 1.9737 30 1 0.0840 -9.7141 1.7797 31 1 -0.6665 -10.5184 -0.3893 32 1 -0.2123 -9.0418 -4.7374 33 1 1.1124 -6.9711 -4.6696 34 1 1.9095 -6.0930 -2.5121 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812905332.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:23 Heat of formation + Delta-G solvation = -50.418038 kcal Electronic energy + Delta-G solvation = -19554.703518 eV Core-core repulsion = 16416.833321 eV Total energy + Delta-G solvation = -3137.870196 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.71645 -41.27054 -38.71535 -37.47125 -35.70105 -34.21356 -33.20422 -31.69572 -30.72873 -28.16452 -25.62540 -24.90344 -24.67834 -22.95197 -21.54190 -19.72041 -19.17531 -18.71034 -18.36550 -17.78635 -17.19700 -16.91091 -16.49594 -15.72404 -15.57625 -15.45149 -14.89770 -14.61905 -14.34768 -14.24577 -14.05721 -13.36773 -13.11647 -13.09707 -12.84318 -12.71269 -12.52486 -12.07397 -12.01732 -11.82983 -11.70722 -11.50265 -11.32717 -10.70522 -10.59622 -9.91483 -9.28637 -8.21696 -6.35911 -0.86144 -0.30687 0.64602 1.02423 1.43356 1.45441 1.55769 1.59057 1.98822 2.42373 2.97473 3.12658 3.22440 3.50033 3.58332 3.68717 3.83810 3.88625 4.09927 4.26600 4.36619 4.37325 4.40307 4.61429 4.67805 4.86810 4.92968 4.96417 5.18004 5.22080 5.27154 5.42419 5.46973 5.49603 5.73355 5.77522 6.09785 6.70685 6.77040 6.82829 7.34939 8.90897 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.029282 B = 0.004000 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.985576 B = 6998.642825 C = 7495.810783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.974 3.026 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.255 1.255 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.039 3.961 10 C -0.090 4.090 11 C 0.462 3.538 12 O -0.525 6.525 13 O -0.291 6.291 14 C 0.070 3.930 15 C -0.117 4.117 16 C -0.082 4.082 17 C -0.095 4.095 18 C 0.111 3.889 19 N -0.491 5.491 20 C 0.134 3.866 21 C -0.163 4.163 22 C -0.079 4.079 23 C -0.131 4.131 24 H 0.264 0.736 25 H -0.010 1.010 26 H -0.010 1.010 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.152 0.848 30 H 0.180 0.820 31 H 0.163 0.837 32 H 0.202 0.798 33 H 0.173 0.827 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.693 -19.141 -3.584 20.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.179 1.179 7 C -0.582 4.582 8 H 0.098 0.902 9 C 0.002 3.998 10 C -0.127 4.127 11 C 0.308 3.692 12 O -0.411 6.411 13 O -0.206 6.206 14 C 0.028 3.972 15 C -0.136 4.136 16 C -0.101 4.101 17 C -0.114 4.114 18 C -0.009 4.009 19 N -0.199 5.199 20 C -0.039 4.039 21 C -0.182 4.182 22 C -0.105 4.105 23 C -0.133 4.133 24 H 0.073 0.927 25 H 0.008 0.992 26 H 0.008 0.992 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.169 0.831 30 H 0.197 0.803 31 H 0.181 0.819 32 H 0.219 0.781 33 H 0.191 0.809 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.673 -19.838 -3.488 20.474 hybrid contribution 0.389 1.899 0.054 1.939 sum 4.062 -17.939 -3.434 18.711 Atomic orbital electron populations 1.70159 1.08283 1.27975 1.51146 1.26078 0.95670 1.03833 0.94416 0.85319 0.78697 0.77690 0.78556 1.19686 1.21269 1.17881 1.21618 0.94172 0.91073 1.51300 0.90227 1.18808 0.93615 0.91844 0.95537 1.21615 0.99398 0.84870 1.06859 1.25190 0.87498 0.85790 0.70755 1.90669 1.17428 1.87495 1.45507 1.84659 1.39330 1.13096 1.83551 1.18843 0.97712 0.87256 0.93397 1.21664 0.97203 0.96648 0.98041 1.21156 0.95108 0.94632 0.99233 1.21206 0.99804 1.00474 0.89895 1.19126 0.95601 0.92288 0.93904 1.68175 1.20843 1.32697 0.98185 1.23699 0.91664 0.90661 0.97845 1.22298 0.98658 0.97971 0.99295 1.21596 0.97467 0.98795 0.92677 1.19197 1.01312 0.98508 0.94289 0.92742 0.99167 0.99158 0.85982 0.85988 0.83053 0.80312 0.81897 0.78103 0.80909 0.85102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.63 13.29 21.45 0.28 -57.34 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 3 Si 0.97 42.97 29.54 68.60 2.03 45.00 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 7 C -0.54 -29.72 9.11 25.60 0.23 -29.49 16 8 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 9 C 0.04 2.09 4.26 29.85 0.13 2.21 16 10 C -0.09 -3.54 5.75 29.85 0.17 -3.36 16 11 C 0.46 18.33 7.29 71.24 0.52 18.85 16 12 O -0.52 -25.11 15.73 21.96 0.35 -24.77 16 13 O -0.29 -9.91 9.41 5.80 0.05 -9.85 16 14 C 0.07 2.27 4.96 22.80 0.11 2.38 16 15 C -0.12 -3.06 9.95 22.37 0.22 -2.83 16 16 C -0.08 -1.66 9.93 22.01 0.22 -1.45 16 17 C -0.10 -2.18 9.97 22.34 0.22 -1.96 16 18 C 0.11 3.21 6.60 40.26 0.27 3.47 16 19 N -0.49 -12.99 10.34 -188.69 -1.95 -14.94 16 20 C 0.13 2.80 11.14 85.05 0.95 3.75 16 21 C -0.16 -3.58 10.03 22.15 0.22 -3.36 16 22 C -0.08 -2.31 9.45 22.47 0.21 -2.09 16 23 C -0.13 -4.15 5.75 -21.21 -0.12 -4.27 16 24 H 0.26 15.25 8.31 -92.71 -0.77 14.47 16 25 H -0.01 -0.60 8.10 -2.39 -0.02 -0.62 16 26 H -0.01 -0.60 8.10 -2.39 -0.02 -0.62 16 27 H 0.12 4.18 8.14 -2.39 -0.02 4.16 16 28 H 0.12 4.14 8.14 -2.38 -0.02 4.12 16 29 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 30 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 31 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 32 H 0.20 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 34 H 0.13 3.81 7.37 -2.91 -0.02 3.79 16 Total: -1.00 -75.70 305.46 5.69 -70.01 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 1.11 Total: 9.69 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: 3.82 Total: -17.80 kcal Atomic # 7 Polarization: -70.61 SS G_CDS: -1.67 Total: -72.28 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: 0.40 Total: -34.62 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -75.70 5.69 -70.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812905332.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.592 kcal (2) G-P(sol) polarization free energy of solvation -75.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds