Wall clock time and date at job start Mon Mar 30 2020 01:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00197 * 2 1 4 4 H 1.48497 * 109.46913 * 270.00250 * 3 2 1 5 5 H 1.48505 * 109.46915 * 29.99992 * 3 2 1 6 6 H 1.48494 * 109.47367 * 149.99831 * 3 2 1 7 7 C 1.37870 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00022 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00099 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47435 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47624 * 180.02562 * 10 9 7 12 12 O 1.20831 * 119.99757 * 359.97438 * 11 10 9 13 13 O 1.34275 * 120.00406 * 180.02562 * 11 10 9 14 14 C 1.35865 * 117.00162 * 175.12793 * 13 11 10 15 15 C 1.39870 * 119.52352 * 256.96400 * 14 13 11 16 16 C 1.36006 * 120.80400 * 179.68876 * 15 14 13 17 17 C 1.40509 * 119.68993 * 0.59572 * 16 15 14 18 18 C 1.40702 * 121.31089 * 179.66013 * 17 16 15 19 19 C 1.36622 * 118.17231 * 180.02562 * 18 17 16 20 20 C 1.39279 * 119.94780 * 359.97438 * 19 18 17 21 21 N 1.31112 * 121.74277 * 0.02818 * 20 19 18 22 22 C 1.33731 * 121.31448 * 359.97393 * 21 20 19 23 23 C 1.36579 * 119.53283 * 77.22966 * 14 13 11 24 24 H 0.97008 * 119.99608 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47062 * 60.00335 * 9 7 2 26 26 H 1.08998 * 109.47444 * 299.99729 * 9 7 2 27 27 H 1.09008 * 109.46631 * 300.00279 * 10 9 7 28 28 H 1.09000 * 109.46949 * 59.99695 * 10 9 7 29 29 H 1.07994 * 119.59477 * 359.97438 * 15 14 13 30 30 H 1.08000 * 120.15614 * 180.27575 * 16 15 14 31 31 H 1.07999 * 120.91262 * 0.02562 * 18 17 16 32 32 H 1.07997 * 120.02504 * 179.97438 * 19 18 17 33 33 H 1.07996 * 119.13177 * 180.02562 * 20 19 18 34 34 H 1.08000 * 120.14100 * 359.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4917 -4.9672 0.0020 12 8 0.2834 -4.9672 0.0030 13 8 2.1631 -6.1301 0.0024 14 6 1.4269 -7.2673 0.1057 15 6 1.3705 -7.9432 1.3289 16 6 0.6366 -9.0803 1.4632 17 6 -0.0643 -9.5909 0.3576 18 6 -0.8282 -10.7684 0.4563 19 6 -1.4834 -11.2076 -0.6591 20 6 -1.3840 -10.4930 -1.8505 21 7 -0.6714 -9.3961 -1.9395 22 6 -0.0057 -8.9122 -0.8853 23 6 0.7568 -7.7372 -0.9878 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5574 -0.8881 26 1 0.6247 -2.5563 0.8920 27 1 2.8712 -3.6047 -0.8891 28 1 2.8726 -3.6040 0.8909 29 1 1.9127 -7.5548 2.1783 30 1 0.5969 -9.5913 2.4138 31 1 -0.8947 -11.3100 1.3883 32 1 -2.0779 -12.1083 -0.6172 33 1 -1.9077 -10.8519 -2.7241 34 1 0.8126 -7.2071 -1.9271 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813095475.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:21 Heat of formation + Delta-G solvation = -31.111893 kcal Electronic energy + Delta-G solvation = -19094.030430 eV Core-core repulsion = 15956.997411 eV Total energy + Delta-G solvation = -3137.033019 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.36779 -40.35815 -37.49063 -35.96985 -33.67060 -33.56464 -31.28245 -30.48487 -29.85647 -26.32968 -24.58069 -23.87981 -22.57691 -22.06419 -20.18312 -18.63785 -17.66281 -17.38029 -17.05216 -16.14429 -15.73439 -15.62764 -14.71577 -14.51653 -14.47755 -14.27902 -13.98495 -13.26421 -13.21436 -12.80518 -12.37563 -12.19234 -11.96115 -11.70648 -11.29416 -10.99104 -10.87639 -10.69962 -10.64972 -10.11227 -10.09907 -9.71690 -9.65916 -9.22728 -8.83461 -8.42018 -8.40570 -6.04192 -4.09625 0.17017 0.54481 1.76979 2.49945 2.60989 3.22193 3.30450 3.36900 3.39690 3.94454 4.13208 4.34351 4.42334 4.54276 4.63483 4.73088 4.83501 5.04953 5.18022 5.31350 5.31817 5.59881 5.66712 5.73531 5.84768 6.02526 6.08097 6.08864 6.15506 6.29463 6.43940 6.71319 6.88517 7.62287 7.67515 7.72203 7.93952 8.18215 8.33524 8.97187 9.54771 11.06734 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.042436 B = 0.003240 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.662939 B = 8639.498955 C = 8907.049392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.530 4.530 8 H 0.060 0.940 9 C 0.032 3.968 10 C -0.099 4.099 11 C 0.454 3.546 12 O -0.483 6.483 13 O -0.306 6.306 14 C 0.115 3.885 15 C -0.114 4.114 16 C -0.084 4.084 17 C -0.108 4.108 18 C -0.054 4.054 19 C -0.180 4.180 20 C 0.131 3.869 21 N -0.471 5.471 22 C 0.141 3.859 23 C -0.099 4.099 24 H 0.262 0.738 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.160 0.840 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.773 -23.120 1.651 23.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.568 4.568 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.137 4.137 11 C 0.298 3.702 12 O -0.366 6.366 13 O -0.223 6.223 14 C 0.072 3.928 15 C -0.133 4.133 16 C -0.103 4.103 17 C -0.110 4.110 18 C -0.080 4.080 19 C -0.200 4.200 20 C -0.042 4.042 21 N -0.179 5.179 22 C 0.020 3.980 23 C -0.118 4.118 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.156 0.844 30 H 0.156 0.844 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.177 0.823 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.334 -22.443 0.879 22.463 hybrid contribution 0.212 0.378 0.743 0.860 sum 0.547 -22.065 1.622 22.131 Atomic orbital electron populations 1.69996 1.06113 1.26838 1.49734 1.25023 0.94865 0.99381 0.95046 0.86525 0.79744 0.83148 0.78168 1.20563 1.21172 1.19761 1.21124 0.93094 0.90507 1.52057 0.92208 1.19057 0.93211 0.89181 0.99046 1.21846 1.00771 0.86633 1.04426 1.25362 0.88268 0.84847 0.71684 1.90692 1.15654 1.86659 1.43601 1.84743 1.40017 1.13308 1.84232 1.18242 0.94336 0.87122 0.93118 1.20995 0.99530 0.96183 0.96551 1.20819 0.95863 0.95841 0.97786 1.18884 1.00194 0.96920 0.95011 1.21452 0.93527 0.93867 0.99127 1.21881 1.01853 1.02077 0.94155 1.22986 0.93852 0.89936 0.97418 1.68064 1.07184 1.12405 1.30206 1.18555 0.95921 0.94576 0.88934 1.20927 0.95806 0.95443 0.99617 0.92790 0.95457 0.95497 0.88505 0.88502 0.84370 0.84351 0.84266 0.84463 0.82300 0.84031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.53 -14.65 9.11 -34.44 -0.31 -14.97 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.84 4.26 -27.88 -0.12 0.72 16 10 C -0.10 -1.99 5.75 -27.88 -0.16 -2.15 16 11 C 0.45 9.01 7.82 36.00 0.28 9.29 16 12 O -0.48 -11.21 15.46 -18.75 -0.29 -11.50 16 13 O -0.31 -5.24 9.99 -23.46 -0.23 -5.47 16 14 C 0.12 1.84 5.10 -39.57 -0.20 1.64 16 15 C -0.11 -1.48 9.89 -39.77 -0.39 -1.87 16 16 C -0.08 -0.92 9.77 -39.53 -0.39 -1.31 16 17 C -0.11 -1.32 5.74 -106.77 -0.61 -1.93 16 18 C -0.05 -0.48 9.89 -39.24 -0.39 -0.87 16 19 C -0.18 -1.47 10.03 -39.78 -0.40 -1.87 16 20 C 0.13 1.33 11.14 -17.47 -0.19 1.14 16 21 N -0.47 -6.67 10.35 -10.99 -0.11 -6.79 16 22 C 0.14 2.10 6.60 -84.87 -0.56 1.54 16 23 C -0.10 -1.60 9.43 -39.35 -0.37 -1.97 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16 26 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 27 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 28 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 29 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 31 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 33 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.14 2.33 8.06 -52.49 -0.42 1.90 16 LS Contribution 306.81 15.07 4.62 4.62 Total: -1.00 -34.03 306.81 -7.98 -42.01 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -3.77 Total: -1.98 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -3.92 Total: -11.03 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: 0.62 Total: -32.95 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.52 Total: -16.98 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.03 -7.98 -42.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813095475.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.900 kcal (2) G-P(sol) polarization free energy of solvation -34.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds