Wall clock time and date at job start Mon Mar 30 2020 01:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 120.00261 * 2 1 4 4 C 1.52999 * 109.47393 * 125.00132 * 3 2 1 5 5 F 1.39901 * 109.47077 * 59.99597 * 4 3 2 6 6 F 1.39899 * 109.47085 * 300.00118 * 4 3 2 7 7 C 1.50699 * 109.47393 * 180.02562 * 4 3 2 8 8 O 1.21304 * 120.00152 * 334.99909 * 7 4 3 9 9 N 1.34776 * 119.99798 * 155.27279 * 7 4 3 10 10 C 1.40595 * 119.99764 * 179.72414 * 9 7 4 11 11 C 1.40646 * 126.08311 * 359.69131 * 10 9 7 12 12 N 1.30914 * 108.38784 * 179.87895 * 11 10 9 13 13 N 1.40065 * 108.40439 * 0.38138 * 12 11 10 14 14 C 1.37327 * 126.06489 * 179.73676 * 13 12 11 15 15 H 1.08003 * 119.99416 * 174.15969 * 14 13 12 16 16 C 1.38979 * 120.00372 * 354.16004 * 14 13 12 17 17 N 1.31300 * 119.99795 * 5.93274 * 16 14 13 18 18 Si 1.86793 * 120.00339 * 185.93961 * 16 14 13 19 19 H 1.48508 * 109.47464 * 94.97550 * 18 16 14 20 20 H 1.48497 * 109.47452 * 214.97875 * 18 16 14 21 21 H 1.48508 * 109.47127 * 334.97858 * 18 16 14 22 22 C 1.35686 * 126.08204 * 180.02562 * 10 9 7 23 23 H 1.07995 * 120.00553 * 180.02562 * 1 2 3 24 24 H 1.08007 * 119.99648 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.00269 * 180.02562 * 2 1 3 26 26 H 1.09002 * 109.47167 * 4.99727 * 3 2 1 27 27 H 1.09004 * 109.47417 * 244.99890 * 3 2 1 28 28 H 0.97001 * 120.00137 * 359.73317 * 9 7 4 29 29 H 1.07998 * 125.80732 * 0.02562 * 11 10 9 30 30 H 0.96997 * 119.99732 * 180.02562 * 17 16 14 31 31 H 1.07995 * 126.24184 * 359.92839 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 9 3.9398 0.2721 1.0666 6 9 2.3192 1.2079 2.3770 7 6 3.7882 2.6384 1.1819 8 8 3.9333 3.2552 0.1476 9 7 4.3053 3.1177 2.3306 10 6 5.0129 4.3326 2.3299 11 6 5.2617 5.1456 1.2095 12 7 5.9460 6.1906 1.6014 13 7 6.1679 6.0823 2.9801 14 6 6.8533 6.9796 3.7616 15 1 6.8859 6.8478 4.8331 16 6 7.5049 8.0573 3.1739 17 7 7.3696 8.2842 1.8877 18 14 8.5733 9.1829 4.2135 19 1 9.9877 8.7378 4.1314 20 1 8.4624 10.5753 3.7094 21 1 8.1191 9.1304 5.6265 22 6 5.5827 4.9261 3.4088 23 1 -0.5401 -0.9352 0.0004 24 1 -0.5400 0.9354 0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3586 2.1316 0.0895 27 1 2.6214 1.4026 -0.9314 28 1 4.1894 2.6244 3.1577 29 1 4.9406 4.9435 0.1984 30 1 7.8247 9.0362 1.4774 31 1 5.5740 4.5523 4.4220 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815151619.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:07 Heat of formation + Delta-G solvation = -28.322507 kcal Electronic energy + Delta-G solvation = -20195.801556 eV Core-core repulsion = 16536.952716 eV Total energy + Delta-G solvation = -3658.848841 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.18474 -47.16054 -40.03242 -38.70581 -35.33761 -34.40126 -33.26888 -30.46321 -29.95280 -27.98405 -25.45482 -24.21074 -21.25165 -20.62530 -20.20653 -19.56974 -18.21321 -17.66580 -17.43354 -16.76636 -15.56633 -15.25575 -15.05904 -14.91719 -14.46409 -14.03645 -13.90309 -13.53197 -13.47511 -13.18012 -13.15587 -12.88385 -12.58645 -11.83282 -11.71663 -11.54906 -11.35108 -11.30513 -11.00570 -10.56849 -10.36430 -9.80703 -9.36146 -9.27013 -8.91952 -8.16426 -6.85448 -6.63774 -4.31699 1.95404 2.32709 2.90433 2.94407 3.03228 3.07501 3.55549 3.72826 3.81480 4.06849 4.25352 4.41196 4.54035 4.75255 4.94087 4.97260 4.99988 5.43817 5.62978 5.66462 6.15097 6.30089 6.34765 6.45924 6.70129 6.85092 6.87977 7.12557 7.75152 7.90326 8.12327 8.33775 8.63083 9.27612 9.55598 10.32343 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.056855 B = 0.003717 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.364201 B = 7530.595414 C = 7733.458369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.161 4.161 3 C -0.120 4.120 4 C 0.292 3.708 5 F -0.183 7.183 6 F -0.190 7.190 7 C 0.465 3.535 8 O -0.504 6.504 9 N -0.597 5.597 10 C -0.071 4.071 11 C -0.027 4.027 12 N -0.260 5.260 13 N -0.138 5.138 14 C -0.323 4.323 15 H 0.118 0.882 16 C 0.047 3.953 17 N -0.767 5.767 18 Si 0.937 3.063 19 H -0.270 1.270 20 H -0.275 1.275 21 H -0.263 1.263 22 C -0.077 4.077 23 H 0.102 0.898 24 H 0.100 0.900 25 H 0.117 0.883 26 H 0.103 0.897 27 H 0.117 0.883 28 H 0.404 0.596 29 H 0.177 0.823 30 H 0.276 0.724 31 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.549 -11.967 0.555 14.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.179 4.179 3 C -0.158 4.158 4 C 0.252 3.748 5 F -0.165 7.165 6 F -0.171 7.171 7 C 0.246 3.754 8 O -0.380 6.380 9 N -0.238 5.238 10 C -0.176 4.176 11 C -0.203 4.203 12 N -0.091 5.091 13 N 0.095 4.905 14 C -0.455 4.455 15 H 0.136 0.864 16 C -0.171 4.171 17 N -0.393 5.393 18 Si 0.760 3.240 19 H -0.196 1.196 20 H -0.200 1.200 21 H -0.187 1.187 22 C -0.228 4.228 23 H 0.120 0.880 24 H 0.118 0.882 25 H 0.135 0.865 26 H 0.121 0.879 27 H 0.135 0.865 28 H 0.238 0.762 29 H 0.193 0.807 30 H 0.087 0.913 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.801 -10.272 -0.694 12.917 hybrid contribution 0.031 -0.811 1.365 1.588 sum -7.769 -11.083 0.670 13.552 Atomic orbital electron populations 1.23907 0.95629 1.02270 0.99406 1.22759 0.96242 0.97566 1.01335 1.21594 0.98264 0.98413 0.97535 1.21347 0.84696 0.84450 0.84305 1.93058 1.68766 1.58443 1.96183 1.93035 1.78931 1.96430 1.48707 1.20359 0.82911 0.86954 0.85199 1.90670 1.58177 1.57743 1.31374 1.42433 1.50345 1.21392 1.09664 1.17261 1.13002 0.91905 0.95476 1.24099 1.03332 0.93943 0.98894 1.78280 1.21167 1.20124 0.89521 1.44594 1.28985 1.11365 1.05572 1.19938 1.29678 1.04890 0.91017 0.86400 1.25672 0.97316 0.97889 0.96230 1.70219 1.33720 1.25353 1.10000 0.85779 0.79732 0.78810 0.79656 1.19563 1.20034 1.18706 1.21277 1.10370 0.93382 0.97771 0.87967 0.88198 0.86508 0.87859 0.86514 0.76178 0.80672 0.91324 0.83370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 14.32 29.02 0.42 -1.08 16 2 C -0.16 -1.60 9.00 -36.03 -0.32 -1.92 16 3 C -0.12 -1.41 4.79 -27.88 -0.13 -1.54 16 4 C 0.29 4.07 2.00 -27.88 -0.06 4.01 16 5 F -0.18 -2.62 16.74 2.25 0.04 -2.58 16 6 F -0.19 -2.55 16.22 2.25 0.04 -2.51 16 7 C 0.46 8.22 7.20 -10.99 -0.08 8.14 16 8 O -0.50 -10.29 13.25 5.54 0.07 -10.21 16 9 N -0.60 -10.93 5.40 -10.00 -0.05 -10.98 16 10 C -0.07 -1.63 6.90 -83.84 -0.58 -2.21 16 11 C -0.03 -0.70 10.85 -17.03 -0.18 -0.89 16 12 N -0.26 -7.46 10.42 30.80 0.32 -7.14 16 13 N -0.14 -3.75 3.74 -11.41 -0.04 -3.79 16 14 C -0.32 -8.41 10.24 -14.82 -0.15 -8.56 16 15 H 0.12 2.73 7.84 -52.48 -0.41 2.32 16 16 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 17 N -0.77 -21.08 11.84 55.49 0.66 -20.42 16 18 Si 0.94 18.59 29.55 -169.99 -5.02 13.56 16 19 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.28 -5.42 7.11 56.52 0.40 -5.01 16 21 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 22 C -0.08 -1.79 11.49 -16.39 -0.19 -1.97 16 23 H 0.10 0.71 8.06 -52.49 -0.42 0.28 16 24 H 0.10 0.80 7.84 -52.48 -0.41 0.39 16 25 H 0.12 1.09 8.04 -52.49 -0.42 0.67 16 26 H 0.10 1.15 7.79 -51.93 -0.40 0.75 16 27 H 0.12 1.37 7.87 -51.93 -0.41 0.96 16 28 H 0.40 6.05 8.38 -40.82 -0.34 5.70 16 29 H 0.18 4.43 5.92 -52.49 -0.31 4.12 16 30 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.15 2.87 8.06 -52.49 -0.42 2.44 16 LS Contribution 288.87 15.07 4.35 4.35 Total: -1.00 -31.23 288.87 -3.71 -34.94 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -2.69 Total: 9.71 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -1.38 Total: -4.93 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.88 Total: -42.34 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.07 Total: -10.21 kcal Atomic # 9 Polarization: -5.16 SS G_CDS: 0.07 Total: -5.09 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.02 Total: 13.56 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.23 -3.71 -34.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815151619.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.620 kcal (2) G-P(sol) polarization free energy of solvation -31.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds