Wall clock time and date at job start Mon Mar 30 2020 01:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21562 * 120.00255 * 359.97438 * 14 13 3 16 16 C 1.47711 * 119.99811 * 180.02562 * 14 13 3 17 17 C 1.41506 * 126.51207 * 179.71662 * 16 14 13 18 18 C 1.35510 * 105.48589 * 179.83971 * 17 16 14 19 19 Cl 1.73601 * 126.40458 * 180.10205 * 18 17 16 20 20 N 1.35069 * 107.19627 * 0.41557 * 18 17 16 21 21 C 1.46498 * 124.88416 * 179.72835 * 20 18 17 22 22 N 1.28463 * 110.23297 * 359.72028 * 20 18 17 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 28 28 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 29 29 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 30 30 H 1.08004 * 127.25506 * 359.96414 * 17 16 14 31 31 H 1.08998 * 109.46863 * 270.01888 * 21 20 18 32 32 H 1.09000 * 109.47226 * 30.02139 * 21 20 18 33 33 H 1.09005 * 109.47352 * 150.02178 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3410 2.6326 0.4320 16 6 0.0447 3.3252 2.6290 17 6 -1.1883 3.9654 2.8976 18 6 -1.0921 4.4155 4.1722 19 17 -2.3107 5.2830 5.0532 20 7 0.1318 4.0693 4.6266 21 6 0.6454 4.3726 5.9647 22 7 0.7806 3.4355 3.7169 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8292 -0.0604 -2.9503 29 1 2.2720 2.1231 1.9978 30 1 -2.0296 4.0711 2.2286 31 1 1.1531 5.3370 5.9489 32 1 -0.1831 4.4096 6.6721 33 1 1.3483 3.5969 6.2686 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828505093.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:54 Heat of formation + Delta-G solvation = 12.450916 kcal Electronic energy + Delta-G solvation = -18500.679711 eV Core-core repulsion = 15395.395619 eV Total energy + Delta-G solvation = -3105.284092 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.80898 -40.47790 -37.98825 -36.95065 -34.68568 -34.22756 -32.78668 -31.57974 -29.28473 -28.14954 -25.27396 -24.07831 -22.61606 -21.77894 -20.97733 -19.49768 -18.25315 -17.60098 -17.35949 -17.11005 -16.17812 -16.04749 -15.41149 -15.13471 -14.83719 -14.55331 -14.04498 -13.72780 -13.51820 -13.47716 -13.15352 -13.08585 -12.90792 -12.77169 -12.64021 -12.18102 -12.07873 -11.89169 -11.58109 -11.06489 -10.99191 -10.51267 -10.28653 -10.12162 -9.64501 -8.14167 -6.31462 0.36159 0.41197 0.81120 1.46284 1.48465 1.54088 1.56781 2.36157 2.42894 2.60617 3.14977 3.21420 3.93199 4.16760 4.30217 4.34430 4.48086 4.51768 4.59246 4.60625 4.77648 5.05518 5.11756 5.27481 5.43356 5.45366 5.54623 5.61118 5.80292 5.91394 6.17062 6.56816 6.74042 6.97386 7.31831 7.48625 8.91194 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.030755 B = 0.004354 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.193852 B = 6429.567862 C = 7032.990384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.120 4.120 3 C 0.277 3.723 4 H 0.005 0.995 5 C -0.551 4.551 6 H 0.068 0.932 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.971 3.029 10 H -0.265 1.265 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.690 5.690 14 C 0.587 3.413 15 O -0.571 6.571 16 C -0.024 4.024 17 C -0.170 4.170 18 C 0.055 3.945 19 Cl 0.030 6.970 20 N -0.266 5.266 21 C 0.067 3.933 22 N -0.247 5.247 23 H 0.030 0.970 24 H 0.039 0.961 25 H 0.048 0.952 26 H 0.039 0.961 27 H 0.076 0.924 28 H 0.266 0.734 29 H 0.404 0.596 30 H 0.174 0.826 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.841 8.359 18.806 21.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.023 0.977 5 C -0.589 4.589 6 H 0.086 0.914 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.795 3.205 10 H -0.190 1.190 11 H -0.209 1.209 12 H -0.198 1.198 13 N -0.338 5.338 14 C 0.371 3.629 15 O -0.450 6.450 16 C -0.182 4.182 17 C -0.199 4.199 18 C -0.097 4.097 19 Cl 0.058 6.942 20 N -0.057 5.057 21 C -0.071 4.071 22 N -0.086 5.086 23 H 0.049 0.951 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.238 0.762 30 H 0.192 0.808 31 H 0.128 0.872 32 H 0.139 0.861 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.371 8.058 18.598 21.246 hybrid contribution 0.186 0.226 -0.417 0.510 sum -6.185 8.284 18.181 20.914 Atomic orbital electron populations 1.21692 0.96881 0.99348 1.00310 1.21789 0.93867 0.98888 1.01411 1.18492 0.93891 0.89358 0.80822 0.97697 1.21509 0.91280 1.39305 1.06844 0.91383 1.25737 1.03320 0.94230 0.94874 1.70033 1.37117 1.38142 1.09768 0.85424 0.79056 0.78409 0.77595 1.19005 1.20943 1.19774 1.46177 1.14772 1.54933 1.17896 1.17178 0.82319 0.78204 0.85170 1.90740 1.52605 1.61536 1.40097 1.21790 0.95076 1.07186 0.94191 1.21580 0.99656 1.03491 0.95149 1.21867 0.87809 1.06167 0.93814 1.98402 1.48344 1.73109 1.74311 1.45956 1.08776 1.37494 1.13518 1.22779 1.03318 1.05448 0.75537 1.73682 1.22801 1.13957 0.98148 0.95062 0.94157 0.93322 0.94236 0.90531 0.92480 0.76179 0.80850 0.87233 0.86121 0.86650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.80 8.51 71.98 0.61 -5.19 16 2 C -0.12 -6.11 5.45 30.59 0.17 -5.95 16 3 C 0.28 14.73 2.24 44.24 0.10 14.83 16 4 H 0.01 0.32 7.58 -2.39 -0.02 0.30 16 5 C -0.55 -29.98 8.73 25.60 0.22 -29.76 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 1.02 5.29 84.65 0.45 1.47 16 8 N -0.91 -52.44 11.30 21.45 0.24 -52.20 16 9 Si 0.97 42.54 29.54 68.60 2.03 44.56 16 10 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 12 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 13 N -0.69 -31.25 5.02 -449.12 -2.25 -33.51 16 14 C 0.59 25.81 6.39 86.75 0.55 26.36 16 15 O -0.57 -28.51 14.06 -3.91 -0.05 -28.56 16 16 C -0.02 -0.86 7.13 42.46 0.30 -0.56 16 17 C -0.17 -5.06 10.79 22.44 0.24 -4.82 16 18 C 0.05 1.26 7.44 83.56 0.62 1.89 16 19 Cl 0.03 0.49 28.67 -2.72 -0.08 0.41 16 20 N -0.27 -5.98 3.70 -359.16 -1.33 -7.31 16 21 C 0.07 0.72 11.14 127.77 1.42 2.14 16 22 N -0.25 -7.53 11.67 -48.17 -0.56 -8.09 16 23 H 0.03 1.54 7.84 -2.39 -0.02 1.52 16 24 H 0.04 1.83 5.65 -2.39 -0.01 1.82 16 25 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 26 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.08 4.27 5.95 -2.39 -0.01 4.26 16 28 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.40 16.59 8.26 -92.71 -0.77 15.83 16 30 H 0.17 4.91 8.06 -2.91 -0.02 4.88 16 31 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.12 0.71 7.71 -2.39 -0.02 0.69 16 33 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 Total: -1.00 -68.15 298.06 3.06 -65.09 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.38 Total: 19.18 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 4.70 Total: 0.42 kcal Atomic # 7 Polarization: -97.19 SS G_CDS: -3.90 Total: -101.10 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.05 Total: -28.56 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 17 Polarization: 0.49 SS G_CDS: -0.08 Total: 0.41 kcal Total: -68.15 3.06 -65.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828505093.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.539 kcal (2) G-P(sol) polarization free energy of solvation -68.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds