Wall clock time and date at job start Mon Mar 30 2020 00:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00559 * 2 1 4 4 H 1.48494 * 109.47574 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47211 * 300.00858 * 3 2 1 6 6 H 1.48505 * 109.46918 * 60.00341 * 3 2 1 7 7 C 1.37884 * 119.99800 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00365 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99618 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46910 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47433 * 180.02562 * 10 9 7 12 12 C 1.34771 * 120.00308 * 179.97438 * 11 10 9 13 13 O 1.21595 * 119.99960 * 0.02562 * 12 11 10 14 14 N 1.34783 * 120.00026 * 180.02562 * 12 11 10 15 15 C 1.40212 * 119.99845 * 184.20847 * 14 12 11 16 16 C 1.39148 * 120.46704 * 325.90978 * 15 14 12 17 17 C 1.38545 * 118.42223 * 180.27190 * 16 15 14 18 18 C 1.38468 * 119.26222 * 359.74198 * 17 16 15 19 19 F 1.35099 * 119.55857 * 180.02562 * 18 17 16 20 20 N 1.32081 * 120.87261 * 0.02562 * 18 17 16 21 21 C 1.32037 * 121.72637 * 359.97438 * 20 18 17 22 22 F 1.35097 * 119.67451 * 179.97438 * 21 20 18 23 23 H 0.97006 * 119.99339 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46926 * 60.00682 * 9 7 2 25 25 H 1.08990 * 109.47489 * 300.00427 * 9 7 2 26 26 H 1.08996 * 109.47119 * 60.00242 * 10 9 7 27 27 H 1.09004 * 109.47382 * 300.00441 * 10 9 7 28 28 H 0.97001 * 119.99373 * 0.02562 * 11 10 9 29 29 H 0.96996 * 119.99989 * 4.20580 * 14 12 11 30 30 H 1.08004 * 120.78702 * 359.97438 * 16 15 14 31 31 H 1.08000 * 120.36990 * 179.76797 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 7 1.5126 -4.9309 -0.0012 12 6 2.1863 -6.0981 -0.0018 13 8 3.4023 -6.0982 -0.0014 14 7 1.5124 -7.2653 -0.0029 15 6 2.2105 -8.4780 0.0856 16 6 3.4638 -8.6152 -0.5032 17 6 4.1135 -9.8340 -0.3947 18 6 3.5028 -10.8675 0.2954 19 9 4.1312 -12.0584 0.4054 20 7 2.3140 -10.7044 0.8475 21 6 1.6622 -9.5590 0.7667 22 9 0.4480 -9.4381 1.3466 23 1 -0.4849 0.8402 0.0004 24 1 0.6240 -2.5567 -0.8904 25 1 0.6245 -2.5571 0.8895 26 1 2.8717 -3.6045 0.8894 27 1 2.8718 -3.6045 -0.8905 28 1 0.5426 -4.9308 -0.0019 29 1 0.5444 -7.2663 -0.0648 30 1 3.9171 -7.7926 -1.0364 31 1 5.0858 -9.9763 -0.8429 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844677753.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:04 Heat of formation + Delta-G solvation = -98.226754 kcal Electronic energy + Delta-G solvation = -19495.657702 eV Core-core repulsion = 15833.777585 eV Total energy + Delta-G solvation = -3661.880116 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.30665 -50.16805 -41.96404 -40.53531 -36.99450 -36.11551 -34.88737 -33.51549 -31.81201 -30.26683 -26.81036 -25.35906 -24.73496 -22.94822 -22.20269 -20.27855 -19.66342 -18.94612 -18.75954 -18.36880 -17.75000 -17.12087 -16.77939 -16.59080 -16.47824 -16.25995 -15.83441 -15.28979 -15.12513 -14.59395 -14.35192 -14.28036 -14.21080 -13.85735 -13.19974 -12.96817 -12.50037 -12.36045 -12.11679 -11.77276 -11.59674 -11.37405 -11.17796 -10.80557 -10.59866 -10.14136 -9.40049 -8.22937 -6.32525 -0.51895 -0.23422 1.27330 1.42653 1.45038 1.56996 1.83420 1.86027 2.26520 2.41915 2.72434 3.06234 3.12899 3.33455 3.62401 3.94045 4.38113 4.45792 4.54406 4.64167 4.76494 4.88718 4.98605 5.23726 5.44150 5.48176 5.61589 5.69710 5.83138 6.03369 6.17633 6.80322 6.83990 7.30849 7.37111 8.89033 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.047732 B = 0.003063 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.471516 B = 9139.340330 C = 9620.051041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.963 3.037 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.021 3.979 10 C 0.159 3.841 11 N -0.721 5.721 12 C 0.705 3.295 13 O -0.607 6.607 14 N -0.667 5.667 15 C 0.097 3.903 16 C -0.031 4.031 17 C -0.152 4.152 18 C 0.313 3.687 19 F -0.105 7.105 20 N -0.551 5.551 21 C 0.308 3.692 22 F -0.104 7.104 23 H 0.265 0.735 24 H 0.011 0.989 25 H 0.008 0.992 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.411 0.589 29 H 0.427 0.573 30 H 0.174 0.826 31 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.054 -19.221 -2.144 19.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.788 3.212 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.017 4.017 10 C 0.035 3.965 11 N -0.375 5.375 12 C 0.405 3.595 13 O -0.486 6.486 14 N -0.317 5.317 15 C -0.003 4.003 16 C -0.058 4.058 17 C -0.174 4.174 18 C 0.159 3.841 19 F -0.084 7.084 20 N -0.272 5.272 21 C 0.152 3.848 22 F -0.083 7.083 23 H 0.074 0.926 24 H 0.029 0.971 25 H 0.027 0.973 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.247 0.753 29 H 0.267 0.733 30 H 0.191 0.809 31 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 4.567 -19.702 -1.669 20.293 hybrid contribution -0.767 1.274 -0.049 1.488 sum 3.800 -18.428 -1.718 18.894 Atomic orbital electron populations 1.70063 1.07532 1.27863 1.51234 1.25848 0.95745 1.03052 0.94568 0.85424 0.79129 0.78955 0.77716 1.18753 1.20417 1.20542 1.21503 0.93717 0.91797 1.51138 0.92011 1.19156 0.94347 0.91668 0.96513 1.21198 0.94596 0.80235 1.00440 1.45246 1.10846 1.04151 1.77229 1.15944 0.85249 0.80572 0.77714 1.90876 1.12609 1.86537 1.58605 1.42290 1.11138 1.01682 1.76592 1.18222 0.96059 0.85754 1.00303 1.21805 0.91825 0.97875 0.94326 1.22109 1.03937 0.90431 1.00878 1.17669 0.87198 0.82831 0.96439 1.91662 1.79155 1.43536 1.94046 1.65933 1.10965 1.25768 1.24518 1.17130 0.83585 0.89170 0.94917 1.91652 1.39270 1.95475 1.81894 0.92636 0.97074 0.97350 0.93197 0.92691 0.75329 0.73349 0.80889 0.78710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.81 13.29 21.45 0.28 -52.53 16 2 C 0.01 0.36 5.46 84.66 0.46 0.82 16 3 Si 0.96 42.25 29.54 68.60 2.03 44.28 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.54 -28.86 9.11 25.60 0.23 -28.63 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 9 C 0.02 0.97 5.09 29.85 0.15 1.13 16 10 C 0.16 6.13 5.61 86.38 0.48 6.61 16 11 N -0.72 -21.62 5.56 -478.53 -2.66 -24.28 16 12 C 0.70 20.31 8.43 179.05 1.51 21.82 16 13 O -0.61 -21.01 13.78 -4.01 -0.06 -21.06 16 14 N -0.67 -14.33 5.25 -316.61 -1.66 -15.99 16 15 C 0.10 2.11 6.35 38.21 0.24 2.36 16 16 C -0.03 -0.60 8.81 22.56 0.20 -0.41 16 17 C -0.15 -2.37 10.07 22.40 0.23 -2.14 16 18 C 0.31 6.25 8.40 84.71 0.71 6.97 16 19 F -0.10 -2.05 17.29 44.97 0.78 -1.27 16 20 N -0.55 -13.33 10.38 -197.58 -2.05 -15.38 16 21 C 0.31 7.04 8.43 84.85 0.72 7.76 16 22 F -0.10 -2.34 16.98 44.97 0.76 -1.58 16 23 H 0.26 14.21 8.31 -92.70 -0.77 13.43 16 24 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 25 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 28 H 0.41 10.27 8.49 -92.71 -0.79 9.48 16 29 H 0.43 6.73 8.68 -92.71 -0.81 5.93 16 30 H 0.17 3.68 6.26 -2.91 -0.02 3.66 16 31 H 0.20 1.63 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -64.18 289.25 1.97 -62.20 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -0.38 Total: 9.33 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 4.93 Total: 16.28 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -6.09 Total: -108.17 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.06 Total: -21.06 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 1.54 Total: -2.85 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -64.18 1.97 -62.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844677753.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.025 kcal (2) G-P(sol) polarization free energy of solvation -64.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds