Wall clock time and date at job start Mon Mar 30 2020 01:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46503 * 119.99741 * 2 1 4 4 C 1.50701 * 109.47000 * 270.00530 * 3 2 1 5 5 H 1.07993 * 120.00266 * 359.97438 * 4 3 2 6 6 C 1.37883 * 119.99516 * 180.02562 * 4 3 2 7 7 N 1.31508 * 120.00558 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99571 * 179.97438 * 6 4 3 9 9 H 1.48511 * 109.47161 * 60.00027 * 8 6 4 10 10 H 1.48501 * 109.47231 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47534 * 300.00116 * 8 6 4 12 12 C 1.34771 * 120.00292 * 180.02562 * 2 1 3 13 13 O 1.21595 * 119.99960 * 180.02562 * 12 2 1 14 14 N 1.34783 * 120.00026 * 359.97438 * 12 2 1 15 15 C 1.40212 * 119.99774 * 184.21787 * 14 12 2 16 16 C 1.39142 * 120.47048 * 325.81523 * 15 14 12 17 17 C 1.38541 * 118.42890 * 180.26824 * 16 15 14 18 18 C 1.38467 * 119.26133 * 359.74865 * 17 16 15 19 19 F 1.35094 * 119.56596 * 179.97438 * 18 17 16 20 20 N 1.32099 * 120.86960 * 359.97438 * 18 17 16 21 21 C 1.32032 * 121.72394 * 0.02562 * 20 18 17 22 22 F 1.35100 * 119.67481 * 179.97438 * 21 20 18 23 23 H 1.09007 * 109.47353 * 269.99593 * 1 2 3 24 24 H 1.08995 * 109.47589 * 30.00171 * 1 2 3 25 25 H 1.09000 * 109.47127 * 150.00181 * 1 2 3 26 26 H 1.08999 * 109.47005 * 30.00174 * 3 2 1 27 27 H 1.08998 * 109.47280 * 149.99973 * 3 2 1 28 28 H 0.96991 * 120.00469 * 180.02562 * 7 6 4 29 29 H 0.96996 * 119.99432 * 4.21298 * 14 12 2 30 30 H 1.08005 * 120.78404 * 0.02562 * 16 15 14 31 31 H 1.07996 * 120.37393 * 179.77067 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0979 1.0959 -2.2417 6 6 3.1267 2.8777 -1.6727 7 7 3.5540 3.6177 -0.6732 8 14 3.4384 3.4166 -3.4339 9 1 2.1410 3.5945 -4.1342 10 1 4.1808 4.7028 -3.4339 11 1 4.2408 2.3814 -4.1337 12 6 2.1389 -1.1671 -0.0005 13 8 3.3548 -1.1670 -0.0001 14 7 1.4650 -2.3344 -0.0005 15 6 2.1634 -3.5470 0.0882 16 6 3.4154 -3.6850 -0.5028 17 6 4.0655 -4.9036 -0.3938 18 6 3.4562 -5.9362 0.2989 19 9 4.0843 -7.1272 0.4085 20 7 2.2688 -5.7720 0.8539 21 6 1.6168 -4.6268 0.7727 22 9 0.4041 -4.5047 1.3556 23 1 -0.3634 -0.0001 1.0277 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6083 2.0284 0.5139 27 1 3.1498 1.1385 0.5138 28 1 4.0308 4.4436 -0.8503 29 1 0.4970 -2.3355 -0.0619 30 1 3.8681 -2.8629 -1.0374 31 1 5.0368 -5.0465 -0.8438 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844678441.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:23 Heat of formation + Delta-G solvation = -78.495351 kcal Electronic energy + Delta-G solvation = -20283.187056 eV Core-core repulsion = 16622.162558 eV Total energy + Delta-G solvation = -3661.024499 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.29645 -50.16596 -41.95473 -40.53522 -36.96369 -36.21883 -34.69768 -33.44623 -30.93807 -29.45481 -27.42461 -25.63029 -25.14762 -24.10604 -21.30881 -20.02995 -19.64439 -18.81704 -18.58586 -18.43686 -17.73473 -17.08989 -16.85699 -16.66622 -16.47972 -16.00834 -15.74542 -14.91845 -14.64498 -14.57485 -14.28447 -14.22219 -13.96656 -13.75236 -13.48360 -13.14497 -12.80347 -12.52008 -12.20210 -12.14279 -11.71699 -11.53638 -11.13345 -10.75551 -10.60598 -9.68845 -9.27278 -8.19238 -6.33739 -0.50647 -0.23693 1.37792 1.42038 1.44503 1.52236 1.86261 1.93472 2.29908 2.42046 2.72096 2.90326 3.11538 3.33678 3.62607 3.91962 4.26642 4.39030 4.61825 4.68095 4.78997 4.82894 4.95543 5.03794 5.22966 5.47168 5.52247 5.70969 5.91577 6.02537 6.06978 6.74487 6.88208 7.31286 7.48151 8.87353 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.028028 B = 0.004522 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.766364 B = 6190.221380 C = 6842.950772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.614 5.614 3 C 0.274 3.726 4 C -0.542 4.542 5 H 0.056 0.944 6 C 0.011 3.989 7 N -0.928 5.928 8 Si 0.965 3.035 9 H -0.263 1.263 10 H -0.282 1.282 11 H -0.276 1.276 12 C 0.698 3.302 13 O -0.609 6.609 14 N -0.668 5.668 15 C 0.099 3.901 16 C -0.036 4.036 17 C -0.152 4.152 18 C 0.314 3.686 19 F -0.103 7.103 20 N -0.546 5.546 21 C 0.310 3.690 22 F -0.101 7.101 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.030 0.970 27 H 0.005 0.995 28 H 0.267 0.733 29 H 0.424 0.576 30 H 0.164 0.836 31 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.492 -15.140 -0.362 16.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.347 5.347 3 C 0.153 3.847 4 C -0.581 4.581 5 H 0.074 0.926 6 C -0.188 4.188 7 N -0.567 5.567 8 Si 0.790 3.210 9 H -0.187 1.187 10 H -0.207 1.207 11 H -0.202 1.202 12 C 0.400 3.600 13 O -0.488 6.488 14 N -0.320 5.320 15 C -0.002 4.002 16 C -0.064 4.064 17 C -0.174 4.174 18 C 0.159 3.841 19 F -0.082 7.082 20 N -0.267 5.267 21 C 0.154 3.846 22 F -0.080 7.080 23 H 0.091 0.909 24 H 0.096 0.904 25 H 0.104 0.896 26 H 0.048 0.952 27 H 0.023 0.977 28 H 0.076 0.924 29 H 0.265 0.735 30 H 0.181 0.819 31 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -5.008 -15.542 0.170 16.330 hybrid contribution -0.026 0.958 -0.807 1.253 sum -5.034 -14.584 -0.637 15.441 Atomic orbital electron populations 1.21950 0.77816 1.04151 1.02855 1.47373 1.08081 1.04766 1.74521 1.18778 0.91099 0.78614 0.96210 1.21672 1.36862 1.06551 0.93026 0.92583 1.25789 0.94944 0.96434 1.01640 1.70027 1.38854 1.14815 1.33028 0.85504 0.78721 0.77319 0.79469 1.18728 1.20712 1.20167 1.15961 0.85107 0.80738 0.78231 1.90853 1.13167 1.86163 1.58666 1.42490 1.10942 1.01664 1.76952 1.18267 0.95975 0.85971 0.99998 1.21768 0.92250 0.97776 0.94566 1.22062 1.03842 0.90429 1.01031 1.17569 0.87283 0.82727 0.96473 1.91657 1.79170 1.43314 1.94067 1.65948 1.10791 1.25500 1.24423 1.17024 0.83717 0.89034 0.94860 1.91642 1.39186 1.95466 1.81711 0.90909 0.90375 0.89562 0.95176 0.97682 0.92418 0.73512 0.81907 0.78967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.98 10.24 127.77 1.31 3.29 16 2 N -0.61 -24.05 2.86 -869.31 -2.48 -26.53 16 3 C 0.27 13.86 5.16 85.63 0.44 14.31 16 4 C -0.54 -29.41 9.39 25.60 0.24 -29.17 16 5 H 0.06 2.98 7.81 -2.91 -0.02 2.96 16 6 C 0.01 0.62 5.46 84.66 0.46 1.08 16 7 N -0.93 -53.92 13.29 21.45 0.28 -53.63 16 8 Si 0.97 42.86 29.54 68.60 2.03 44.88 16 9 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 12 C 0.70 27.00 8.14 179.05 1.46 28.45 16 13 O -0.61 -28.45 13.37 -4.01 -0.05 -28.50 16 14 N -0.67 -19.01 5.12 -316.61 -1.62 -20.63 16 15 C 0.10 2.71 6.34 38.21 0.24 2.95 16 16 C -0.04 -0.95 8.81 22.56 0.20 -0.75 16 17 C -0.15 -3.16 10.07 22.40 0.23 -2.93 16 18 C 0.31 7.39 8.40 84.71 0.71 8.10 16 19 F -0.10 -2.29 17.29 44.97 0.78 -1.52 16 20 N -0.55 -14.83 10.38 -197.58 -2.05 -16.88 16 21 C 0.31 8.18 8.43 84.86 0.72 8.89 16 22 F -0.10 -2.50 16.98 44.97 0.76 -1.74 16 23 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 24 H 0.08 2.17 8.07 -2.39 -0.02 2.15 16 25 H 0.09 1.66 6.30 -2.39 -0.02 1.65 16 26 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16 27 H 0.01 0.30 7.42 -2.39 -0.02 0.28 16 28 H 0.27 14.65 8.31 -92.72 -0.77 13.88 16 29 H 0.42 9.19 6.37 -92.71 -0.59 8.60 16 30 H 0.16 5.00 6.27 -2.91 -0.02 4.99 16 31 H 0.19 2.65 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -67.62 285.41 4.25 -63.37 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 0.60 Total: 6.95 kcal Atomic # 6 Polarization: 28.22 SS G_CDS: 6.00 Total: 34.22 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -5.87 Total: -117.67 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.05 Total: -28.50 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 1.54 Total: -3.26 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -67.62 4.25 -63.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844678441.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.125 kcal (2) G-P(sol) polarization free energy of solvation -67.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds