Wall clock time and date at job start Mon Mar 30 2020 01:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47352 * 2 1 4 4 C 1.50708 * 109.46598 * 120.00256 * 2 1 3 5 5 H 1.07994 * 119.99831 * 120.00151 * 4 2 1 6 6 C 1.37880 * 119.99873 * 299.99664 * 4 2 1 7 7 N 1.31514 * 119.99878 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99821 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47367 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47364 * 120.00402 * 8 6 4 11 11 H 1.48513 * 109.46871 * 239.99929 * 8 6 4 12 12 N 1.46503 * 109.47293 * 239.99786 * 2 1 3 13 13 C 1.34771 * 119.99967 * 85.00216 * 12 2 1 14 14 O 1.21595 * 119.99960 * 0.02562 * 13 12 2 15 15 N 1.34783 * 120.00026 * 180.02562 * 13 12 2 16 16 C 1.40212 * 119.99810 * 184.21317 * 15 13 12 17 17 C 1.39143 * 120.46783 * 325.89799 * 16 15 13 18 18 C 1.38541 * 118.42795 * 180.26914 * 17 16 15 19 19 C 1.38464 * 119.26263 * 359.75412 * 18 17 16 20 20 F 1.35094 * 119.56718 * 179.97438 * 19 18 17 21 21 N 1.32090 * 120.86950 * 359.97438 * 19 18 17 22 22 C 1.32038 * 121.72831 * 0.02562 * 21 19 18 23 23 F 1.35096 * 119.68041 * 179.97438 * 22 21 19 24 24 H 1.09001 * 109.47598 * 300.00616 * 1 2 3 25 25 H 1.09015 * 109.46757 * 59.99970 * 1 2 3 26 26 H 1.08999 * 109.47598 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99941 * 179.97438 * 7 6 4 28 28 H 0.97001 * 119.99715 * 265.00698 * 12 2 1 29 29 H 0.96996 * 119.99989 * 4.20580 * 15 13 12 30 30 H 1.08008 * 120.78606 * 0.02562 * 17 16 15 31 31 H 1.08004 * 120.37342 * 179.72651 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9427 0.8296 2.6034 8 14 2.3222 -1.1197 4.0080 9 1 3.1469 -2.2865 3.6039 10 1 3.1469 -0.1860 4.8162 11 1 1.1673 -1.5867 4.8165 12 7 2.0184 -0.6907 -1.1962 13 6 2.1471 -0.0184 -2.3571 14 8 1.8584 1.1616 -2.4116 15 7 2.5960 -0.6539 -3.4577 16 6 2.8140 0.0643 -4.6420 17 6 1.9970 1.1403 -4.9752 18 6 2.2469 1.8166 -6.1582 19 6 3.2965 1.4072 -6.9631 20 9 3.5454 2.0619 -8.1183 21 7 4.0578 0.3850 -6.6164 22 6 3.8528 -0.2854 -5.4975 23 9 4.6566 -1.3249 -5.1836 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 0.7080 1.1608 3.4844 28 1 2.2490 -1.6319 -1.1525 29 1 2.7682 -1.6080 -3.4304 30 1 1.1848 1.4387 -4.3288 31 1 1.6295 2.6535 -6.4497 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844679304.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:25 Heat of formation + Delta-G solvation = -70.733180 kcal Electronic energy + Delta-G solvation = -20076.405514 eV Core-core repulsion = 16415.717609 eV Total energy + Delta-G solvation = -3660.687906 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.25579 -49.18159 -40.68266 -39.19438 -35.59060 -34.54296 -32.80483 -32.22758 -29.96348 -28.35682 -25.35551 -24.33296 -23.78932 -21.56228 -20.14042 -19.00742 -18.58055 -17.96945 -17.53451 -16.70986 -16.20591 -15.91463 -15.62435 -15.19258 -14.98180 -14.71181 -14.35867 -13.58674 -13.45277 -13.27444 -13.25294 -12.80833 -12.52259 -11.90881 -11.23522 -11.13991 -10.94787 -10.81148 -10.39178 -10.38007 -10.32324 -9.96275 -9.53049 -9.15715 -8.67741 -8.43294 -8.00968 -6.21583 -4.31082 0.51674 0.80769 2.63550 2.95482 3.11833 3.18840 3.27377 3.29832 3.59411 3.78219 4.24510 4.34916 4.54880 4.70436 5.03835 5.11845 5.32555 5.64677 5.83861 6.07719 6.56720 6.62205 6.83576 6.88398 7.04009 7.06904 7.26528 7.51451 7.66968 7.83425 8.03841 8.54411 8.68882 8.98178 9.36739 10.84519 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.038910 B = 0.003877 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.431304 B = 7220.079935 C = 7678.267908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.278 3.722 3 H 0.052 0.948 4 C -0.536 4.536 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.711 5.711 13 C 0.695 3.305 14 O -0.581 6.581 15 N -0.686 5.686 16 C 0.112 3.888 17 C -0.029 4.029 18 C -0.175 4.175 19 C 0.312 3.688 20 F -0.108 7.108 21 N -0.528 5.528 22 C 0.307 3.693 23 F -0.103 7.103 24 H 0.092 0.908 25 H 0.015 0.985 26 H 0.027 0.973 27 H 0.265 0.735 28 H 0.389 0.611 29 H 0.410 0.590 30 H 0.178 0.822 31 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.149 -2.321 -14.467 14.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.177 3.823 3 H 0.069 0.931 4 C -0.574 4.574 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.362 5.362 13 C 0.395 3.605 14 O -0.459 6.459 15 N -0.335 5.335 16 C 0.010 3.990 17 C -0.057 4.057 18 C -0.197 4.197 19 C 0.158 3.842 20 F -0.087 7.087 21 N -0.248 5.248 22 C 0.150 3.850 23 F -0.082 7.082 24 H 0.111 0.889 25 H 0.035 0.965 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.222 0.778 29 H 0.246 0.754 30 H 0.195 0.805 31 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.477 -1.398 -14.745 14.885 hybrid contribution 0.252 -1.269 1.158 1.736 sum 1.729 -2.666 -13.587 13.954 Atomic orbital electron populations 1.22114 0.98285 0.99246 1.01056 1.18779 0.91002 0.93839 0.78673 0.93059 1.21223 1.32687 1.13403 0.90130 0.91912 1.24874 0.94726 0.94935 0.99087 1.69902 1.35702 1.22378 1.23964 0.86361 0.78628 0.79516 0.82409 1.19713 1.20811 1.20819 1.45915 1.67801 1.13560 1.08890 1.16126 0.78758 0.85382 0.80223 1.90867 1.56734 1.14204 1.84080 1.42751 1.70583 1.11779 1.08405 1.18187 0.94875 0.97489 0.88431 1.21781 0.97873 0.91984 0.94073 1.21849 0.99157 1.03625 0.95103 1.17433 0.92758 0.89823 0.84188 1.91641 1.93815 1.77700 1.45554 1.65950 1.31289 1.09316 1.18291 1.17188 0.88179 0.88347 0.91263 1.91646 1.71751 1.53483 1.91359 0.88943 0.96546 0.95379 0.92501 0.77816 0.75363 0.80478 0.82277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.26 37.16 0.34 -3.10 16 2 C 0.28 6.65 2.56 -69.08 -0.18 6.47 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 4 C -0.54 -13.53 8.73 -34.44 -0.30 -13.83 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -23.90 11.32 55.43 0.63 -23.27 16 8 Si 0.90 19.96 29.54 -169.99 -5.02 14.94 16 9 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 N -0.71 -13.54 5.07 -59.81 -0.30 -13.84 16 13 C 0.69 12.63 8.39 -86.92 -0.73 11.90 16 14 O -0.58 -12.39 13.44 5.28 0.07 -12.32 16 15 N -0.69 -9.49 5.25 -14.05 -0.07 -9.57 16 16 C 0.11 1.52 6.35 -83.39 -0.53 0.99 16 17 C -0.03 -0.38 8.81 -39.13 -0.34 -0.72 16 18 C -0.18 -1.89 10.07 -39.39 -0.40 -2.29 16 19 C 0.31 3.88 8.40 -17.36 -0.15 3.73 16 20 F -0.11 -1.29 17.29 2.25 0.04 -1.25 16 21 N -0.53 -7.48 10.38 -13.80 -0.14 -7.63 16 22 C 0.31 4.19 8.43 -17.16 -0.14 4.05 16 23 F -0.10 -1.37 16.98 2.25 0.04 -1.33 16 24 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 25 H 0.02 0.35 8.14 -51.92 -0.42 -0.07 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 28 H 0.39 6.27 8.56 -40.82 -0.35 5.92 16 29 H 0.41 4.44 8.68 -40.82 -0.35 4.08 16 30 H 0.18 2.46 6.26 -52.48 -0.33 2.13 16 31 H 0.16 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 284.43 15.07 4.29 4.29 Total: -1.00 -29.05 284.43 -5.55 -34.60 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -2.55 Total: 6.53 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: -2.52 Total: 8.86 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.11 Total: -54.30 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.07 Total: -12.32 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.08 Total: -2.58 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.05 -5.55 -34.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844679304.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.138 kcal (2) G-P(sol) polarization free energy of solvation -29.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds