Wall clock time and date at job start Mon Mar 30 2020 01:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47352 * 2 1 4 4 C 1.50708 * 109.46598 * 120.00256 * 2 1 3 5 5 H 1.07994 * 119.99831 * 120.00151 * 4 2 1 6 6 C 1.37880 * 119.99873 * 299.99664 * 4 2 1 7 7 N 1.31514 * 119.99878 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99821 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47367 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47364 * 120.00402 * 8 6 4 11 11 H 1.48513 * 109.46871 * 239.99929 * 8 6 4 12 12 N 1.46503 * 109.47293 * 239.99786 * 2 1 3 13 13 C 1.34771 * 119.99967 * 85.00216 * 12 2 1 14 14 O 1.21595 * 119.99960 * 0.02562 * 13 12 2 15 15 N 1.34783 * 120.00026 * 180.02562 * 13 12 2 16 16 C 1.40212 * 119.99810 * 184.21317 * 15 13 12 17 17 C 1.39143 * 120.46783 * 325.89799 * 16 15 13 18 18 C 1.38541 * 118.42795 * 180.26914 * 17 16 15 19 19 C 1.38464 * 119.26263 * 359.75412 * 18 17 16 20 20 F 1.35094 * 119.56718 * 179.97438 * 19 18 17 21 21 N 1.32090 * 120.86950 * 359.97438 * 19 18 17 22 22 C 1.32038 * 121.72831 * 0.02562 * 21 19 18 23 23 F 1.35096 * 119.68041 * 179.97438 * 22 21 19 24 24 H 1.09001 * 109.47598 * 300.00616 * 1 2 3 25 25 H 1.09015 * 109.46757 * 59.99970 * 1 2 3 26 26 H 1.08999 * 109.47598 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99941 * 179.97438 * 7 6 4 28 28 H 0.97001 * 119.99715 * 265.00698 * 12 2 1 29 29 H 0.96996 * 119.99989 * 4.20580 * 15 13 12 30 30 H 1.08008 * 120.78606 * 0.02562 * 17 16 15 31 31 H 1.08004 * 120.37342 * 179.72651 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9427 0.8296 2.6034 8 14 2.3222 -1.1197 4.0080 9 1 3.1469 -2.2865 3.6039 10 1 3.1469 -0.1860 4.8162 11 1 1.1673 -1.5867 4.8165 12 7 2.0184 -0.6907 -1.1962 13 6 2.1471 -0.0184 -2.3571 14 8 1.8584 1.1616 -2.4116 15 7 2.5960 -0.6539 -3.4577 16 6 2.8140 0.0643 -4.6420 17 6 1.9970 1.1403 -4.9752 18 6 2.2469 1.8166 -6.1582 19 6 3.2965 1.4072 -6.9631 20 9 3.5454 2.0619 -8.1183 21 7 4.0578 0.3850 -6.6164 22 6 3.8528 -0.2854 -5.4975 23 9 4.6566 -1.3249 -5.1836 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 0.7080 1.1608 3.4844 28 1 2.2490 -1.6319 -1.1525 29 1 2.7682 -1.6080 -3.4304 30 1 1.1848 1.4387 -4.3288 31 1 1.6295 2.6535 -6.4497 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844679304.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:25 Heat of formation + Delta-G solvation = -90.891916 kcal Electronic energy + Delta-G solvation = -20077.279663 eV Core-core repulsion = 16415.717609 eV Total energy + Delta-G solvation = -3661.562054 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.29005 -50.15857 -41.89208 -40.48114 -37.15167 -36.01683 -34.45625 -33.43358 -31.39677 -29.83022 -27.31300 -25.42804 -24.89709 -23.12946 -21.72209 -20.29075 -19.65661 -19.33261 -18.63862 -17.90442 -17.69173 -17.08067 -16.91806 -16.64759 -16.33566 -16.01227 -15.71702 -15.17781 -14.57080 -14.41726 -14.32933 -14.25978 -13.87866 -13.71454 -12.99134 -12.90576 -12.72307 -12.27955 -12.16030 -12.07598 -11.58547 -11.17369 -11.06529 -10.76913 -10.59856 -9.92393 -9.32902 -8.17038 -6.33335 -0.49558 -0.22227 1.39190 1.45930 1.49594 1.59399 1.88502 1.94759 2.32226 2.42363 2.74729 3.14191 3.26402 3.35748 3.65483 3.97280 4.39547 4.66856 4.76707 4.79255 4.97344 5.02627 5.11810 5.37990 5.47719 5.58710 5.60952 5.82071 6.03951 6.09109 6.12923 6.73864 7.09335 7.33996 7.55090 8.89327 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.038910 B = 0.003877 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.431304 B = 7220.079935 C = 7678.267908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.287 3.713 3 H 0.006 0.994 4 C -0.546 4.546 5 H 0.073 0.927 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.969 3.031 9 H -0.261 1.261 10 H -0.285 1.285 11 H -0.279 1.279 12 N -0.709 5.709 13 C 0.698 3.302 14 O -0.614 6.614 15 N -0.669 5.669 16 C 0.100 3.900 17 C -0.034 4.034 18 C -0.152 4.152 19 C 0.312 3.688 20 F -0.104 7.104 21 N -0.549 5.549 22 C 0.307 3.693 23 F -0.103 7.103 24 H 0.067 0.933 25 H 0.019 0.981 26 H 0.040 0.960 27 H 0.265 0.735 28 H 0.405 0.595 29 H 0.426 0.574 30 H 0.169 0.831 31 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.467 -3.221 -15.146 15.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.183 3.817 3 H 0.024 0.976 4 C -0.585 4.585 5 H 0.091 0.909 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.795 3.205 9 H -0.185 1.185 10 H -0.212 1.212 11 H -0.205 1.205 12 N -0.360 5.360 13 C 0.399 3.601 14 O -0.494 6.494 15 N -0.319 5.319 16 C -0.001 4.001 17 C -0.062 4.062 18 C -0.173 4.173 19 C 0.158 3.842 20 F -0.083 7.083 21 N -0.269 5.269 22 C 0.151 3.849 23 F -0.082 7.082 24 H 0.085 0.915 25 H 0.038 0.962 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.241 0.759 29 H 0.265 0.735 30 H 0.186 0.814 31 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 1.820 -2.353 -15.479 15.762 hybrid contribution 0.167 -0.928 1.235 1.554 sum 1.987 -3.281 -14.244 14.752 Atomic orbital electron populations 1.21923 0.97942 0.99599 0.99911 1.18337 0.91188 0.91842 0.80285 0.97642 1.21562 1.32588 1.13624 0.90700 0.90854 1.25716 0.94896 0.95563 1.02108 1.70041 1.36880 1.23809 1.24571 0.85333 0.78057 0.78514 0.78639 1.18511 1.21162 1.20511 1.45482 1.68217 1.14195 1.08139 1.16107 0.78426 0.84884 0.80700 1.90849 1.58033 1.15804 1.84758 1.42353 1.69665 1.12453 1.07389 1.18260 0.95490 0.98117 0.88233 1.21786 0.97673 0.91997 0.94724 1.22086 0.98299 1.03488 0.93468 1.17615 0.92807 0.89443 0.84380 1.91656 1.93793 1.77506 1.45361 1.65931 1.32181 1.10174 1.18651 1.17092 0.88197 0.88464 0.91188 1.91644 1.71747 1.53462 1.91363 0.91477 0.96241 0.94103 0.92532 0.75933 0.73511 0.81367 0.78799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.31 9.26 71.98 0.67 -5.65 16 2 C 0.29 13.82 2.56 44.25 0.11 13.94 16 3 H 0.01 0.32 7.58 -2.39 -0.02 0.31 16 4 C -0.55 -27.36 8.73 25.60 0.22 -27.14 16 5 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 6 C 0.02 0.90 5.30 84.66 0.45 1.35 16 7 N -0.91 -50.26 11.32 21.45 0.24 -50.01 16 8 Si 0.97 40.49 29.54 68.60 2.03 42.52 16 9 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 10 H -0.29 -12.00 7.11 99.48 0.71 -11.30 16 11 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 12 N -0.71 -26.54 5.07 -461.40 -2.34 -28.88 16 13 C 0.70 25.02 8.39 179.05 1.50 26.52 16 14 O -0.61 -26.32 13.44 -4.01 -0.05 -26.38 16 15 N -0.67 -17.68 5.25 -316.61 -1.66 -19.34 16 16 C 0.10 2.60 6.35 38.21 0.24 2.84 16 17 C -0.03 -0.83 8.81 22.56 0.20 -0.63 16 18 C -0.15 -2.91 10.07 22.40 0.23 -2.68 16 19 C 0.31 7.11 8.40 84.71 0.71 7.82 16 20 F -0.10 -2.26 17.29 44.97 0.78 -1.48 16 21 N -0.55 -14.73 10.38 -197.58 -2.05 -16.78 16 22 C 0.31 7.98 8.43 84.86 0.72 8.69 16 23 F -0.10 -2.60 16.98 44.97 0.76 -1.83 16 24 H 0.07 3.50 6.07 -2.39 -0.01 3.49 16 25 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 28 H 0.41 12.46 8.56 -92.71 -0.79 11.67 16 29 H 0.43 8.48 8.68 -92.71 -0.81 7.68 16 30 H 0.17 4.53 6.26 -2.91 -0.02 4.51 16 31 H 0.19 2.30 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -62.23 284.43 2.37 -59.86 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -0.38 Total: 17.27 kcal Atomic # 6 Polarization: 20.02 SS G_CDS: 5.05 Total: 25.07 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -5.81 Total: -115.02 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.05 Total: -26.38 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 1.54 Total: -3.32 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -62.23 2.37 -59.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844679304.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.033 kcal (2) G-P(sol) polarization free energy of solvation -62.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds