Wall clock time and date at job start Mon Mar 30 2020 01:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.46983 * 2 1 4 4 N 1.32102 * 122.70350 * 270.03314 * 3 2 1 5 5 C 1.29759 * 116.85148 * 179.97438 * 4 3 2 6 6 S 1.76196 * 124.94726 * 179.97438 * 5 4 3 7 7 C 1.81005 * 99.99819 * 180.02562 * 6 5 4 8 8 H 1.08992 * 109.47199 * 54.99814 * 7 6 5 9 9 C 1.52999 * 109.46841 * 295.00043 * 7 6 5 10 10 C 1.53004 * 109.46985 * 175.00386 * 7 6 5 11 11 C 1.50702 * 109.46746 * 294.99725 * 10 7 6 12 12 H 1.08003 * 120.00337 * 0.02562 * 11 10 7 13 13 C 1.37878 * 119.99809 * 180.02562 * 11 10 7 14 14 N 1.31518 * 120.00114 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 120.00019 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47086 * 89.99791 * 15 13 11 17 17 H 1.48502 * 109.46990 * 209.99697 * 15 13 11 18 18 H 1.48499 * 109.46747 * 329.99246 * 15 13 11 19 19 S 1.70967 * 110.09682 * 359.75428 * 5 4 3 20 20 C 1.33336 * 122.71005 * 89.99868 * 3 2 1 21 21 C 1.50703 * 125.94571 * 0.02562 * 20 3 2 22 22 H 1.08995 * 109.47320 * 300.00415 * 1 2 3 23 23 H 1.09001 * 109.46604 * 60.00681 * 1 2 3 24 24 H 1.09003 * 109.46870 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47754 * 239.99299 * 2 1 3 26 26 H 1.09008 * 109.46945 * 119.99436 * 2 1 3 27 27 H 1.09001 * 109.47234 * 299.99823 * 9 7 6 28 28 H 1.08997 * 109.47426 * 60.00182 * 9 7 6 29 29 H 1.08998 * 109.47006 * 180.02562 * 9 7 6 30 30 H 1.08997 * 109.47541 * 54.99828 * 10 7 6 31 31 H 1.08998 * 109.46965 * 175.00371 * 10 7 6 32 32 H 0.96998 * 119.99940 * 180.02562 * 14 13 11 33 33 H 1.09002 * 109.47152 * 90.00252 * 21 20 3 34 34 H 1.09001 * 109.46980 * 330.00352 * 21 20 3 35 35 H 1.09004 * 109.47113 * 210.00333 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2696 2.0940 -1.1116 5 6 2.6994 3.3111 -0.9793 6 16 3.0829 4.3967 -2.3131 7 6 3.6013 5.8624 -1.3863 8 1 4.3984 5.5915 -0.6941 9 6 2.4108 6.4168 -0.6013 10 6 4.1109 6.9274 -2.3595 11 6 5.3568 6.4273 -3.0440 12 1 5.7461 5.4477 -2.8088 13 6 5.9999 7.2203 -3.9706 14 7 5.5256 8.4130 -4.2575 15 14 7.5440 6.6001 -4.8197 16 1 7.1698 5.8804 -6.0635 17 1 8.4191 7.7512 -5.1580 18 1 8.2704 5.6759 -3.9123 19 16 2.8335 3.7099 0.6778 20 6 2.2724 2.1002 1.1219 21 6 2.0901 1.5828 2.5256 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.6136 6.6878 -1.2935 28 1 2.0477 5.6582 0.0921 29 1 2.7228 7.2997 -0.0435 30 1 3.3441 7.1340 -3.1062 31 1 4.3396 7.8411 -1.8111 32 1 5.9779 8.9707 -4.9097 33 1 3.0152 1.1160 2.8638 34 1 1.2856 0.8475 2.5401 35 1 1.8376 2.4109 3.1880 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845325826.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:13 Heat of formation + Delta-G solvation = 12.852265 kcal Electronic energy + Delta-G solvation = -16121.655261 eV Core-core repulsion = 13564.725493 eV Total energy + Delta-G solvation = -2556.929768 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.62511 -34.81402 -33.95979 -32.22583 -31.51604 -27.87712 -26.97239 -24.23196 -23.46174 -23.43082 -20.84916 -18.61651 -18.13948 -16.45048 -16.39338 -15.22171 -15.03675 -14.59581 -14.08036 -14.02135 -13.60540 -13.10147 -13.05978 -12.72044 -12.69538 -12.33668 -12.05906 -11.93607 -11.73028 -11.23809 -11.15631 -10.97856 -10.71466 -10.66024 -10.51019 -9.79942 -9.69110 -9.38358 -9.17041 -9.08630 -8.75221 -8.45049 -6.98740 -6.10282 -4.13201 0.84040 1.38611 1.67340 1.98094 2.92721 3.03138 3.30579 3.36761 3.40701 4.40518 4.56142 4.92550 5.00674 5.20424 5.26827 5.27574 5.37975 5.42895 5.43008 5.52083 5.71383 5.74546 5.78449 5.80572 6.05875 6.10189 6.17110 6.36440 6.42519 6.50546 7.38953 7.45015 7.86251 7.89817 8.20247 8.91353 9.52047 11.00645 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.030946 B = 0.004639 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.593603 B = 6034.188349 C = 6345.727375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.047 4.047 3 C 0.079 3.921 4 N -0.467 5.467 5 C 0.026 3.974 6 S 0.043 5.957 7 C -0.088 4.088 8 H 0.088 0.912 9 C -0.155 4.155 10 C 0.042 3.958 11 C -0.526 4.526 12 H 0.064 0.936 13 C 0.062 3.938 14 N -0.893 5.893 15 Si 0.893 3.107 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.272 1.272 19 S 0.125 5.875 20 C -0.258 4.258 21 C -0.067 4.067 22 H 0.053 0.947 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.030 0.970 31 H 0.041 0.959 32 H 0.263 0.737 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.425 -11.690 12.458 19.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.087 4.087 3 C -0.055 4.055 4 N -0.186 5.186 5 C -0.359 4.359 6 S 0.278 5.722 7 C -0.218 4.218 8 H 0.106 0.894 9 C -0.215 4.215 10 C 0.003 3.997 11 C -0.565 4.565 12 H 0.082 0.918 13 C -0.140 4.140 14 N -0.532 5.532 15 Si 0.720 3.280 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.197 1.197 19 S 0.378 5.622 20 C -0.383 4.383 21 C -0.126 4.126 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.178 -10.947 11.086 17.596 hybrid contribution 0.723 -0.857 0.747 1.347 sum -7.455 -11.804 11.833 18.301 Atomic orbital electron populations 1.21703 0.94526 1.01606 1.02336 1.20084 0.96036 0.89573 1.03035 1.20132 1.01027 0.98035 0.86339 1.66535 1.17148 1.04461 1.30454 1.29164 1.05211 1.00055 1.01472 1.86321 1.76840 1.05614 1.03445 1.23997 0.99602 0.96853 1.01350 0.89374 1.22323 0.97986 1.01130 1.00072 1.19036 0.96548 0.91402 0.92691 1.21233 1.09795 1.02398 1.23058 0.91796 1.24969 0.97657 0.94748 0.96587 1.69947 1.40221 1.09372 1.33614 0.86565 0.82902 0.78395 0.80092 1.20421 1.21209 1.19703 1.84113 1.64121 1.12144 1.01824 1.25596 1.13910 0.98303 1.00509 1.20131 1.02250 1.00770 0.89467 0.92760 0.92247 0.92210 0.90260 0.90540 0.91261 0.92978 0.90996 0.95157 0.94064 0.92779 0.91135 0.90728 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.89 37.16 0.37 -1.06 16 2 C -0.05 -0.54 5.86 -27.88 -0.16 -0.70 16 3 C 0.08 1.19 5.99 -84.19 -0.50 0.69 16 4 N -0.47 -8.53 10.59 -10.94 -0.12 -8.64 16 5 C 0.03 0.48 7.39 51.89 0.38 0.86 16 6 S 0.04 0.86 21.06 -107.50 -2.26 -1.40 16 7 C -0.09 -1.73 2.09 -26.73 -0.06 -1.79 16 8 H 0.09 1.73 7.74 -51.92 -0.40 1.33 16 9 C -0.16 -2.53 8.86 37.16 0.33 -2.20 16 10 C 0.04 1.01 4.44 -27.88 -0.12 0.88 16 11 C -0.53 -14.17 8.53 -34.44 -0.29 -14.46 16 12 H 0.06 1.71 7.60 -52.48 -0.40 1.31 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 15 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 S 0.13 1.91 18.67 -107.50 -2.01 -0.09 16 20 C -0.26 -3.54 6.57 -36.02 -0.24 -3.78 16 21 C -0.07 -0.64 9.80 36.01 0.35 -0.29 16 22 H 0.05 0.51 7.98 -51.93 -0.41 0.09 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.08 0.70 7.33 -51.92 -0.38 0.32 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.05 0.78 4.69 -34.95 -0.16 0.62 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.60 7.24 -51.93 -0.38 0.22 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 313.51 15.07 4.72 4.72 Total: -1.00 -29.70 313.51 -9.06 -38.76 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: -5.07 Total: -4.42 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -0.04 Total: -20.21 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.62 Total: -33.72 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -4.27 Total: -1.49 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.70 -9.06 -38.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845325826.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.613 kcal (2) G-P(sol) polarization free energy of solvation -29.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds