Wall clock time and date at job start Mon Mar 30 2020 01:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.46983 * 2 1 4 4 N 1.32102 * 122.70350 * 270.03314 * 3 2 1 5 5 C 1.29759 * 116.85148 * 179.97438 * 4 3 2 6 6 S 1.76196 * 124.94726 * 179.97438 * 5 4 3 7 7 C 1.81005 * 99.99819 * 180.02562 * 6 5 4 8 8 H 1.08992 * 109.47199 * 54.99814 * 7 6 5 9 9 C 1.52999 * 109.46841 * 295.00043 * 7 6 5 10 10 C 1.53004 * 109.46985 * 175.00386 * 7 6 5 11 11 C 1.50702 * 109.46746 * 294.99725 * 10 7 6 12 12 H 1.08003 * 120.00337 * 0.02562 * 11 10 7 13 13 C 1.37878 * 119.99809 * 180.02562 * 11 10 7 14 14 N 1.31518 * 120.00114 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 120.00019 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47086 * 89.99791 * 15 13 11 17 17 H 1.48502 * 109.46990 * 209.99697 * 15 13 11 18 18 H 1.48499 * 109.46747 * 329.99246 * 15 13 11 19 19 S 1.70967 * 110.09682 * 359.75428 * 5 4 3 20 20 C 1.33336 * 122.71005 * 89.99868 * 3 2 1 21 21 C 1.50703 * 125.94571 * 0.02562 * 20 3 2 22 22 H 1.08995 * 109.47320 * 300.00415 * 1 2 3 23 23 H 1.09001 * 109.46604 * 60.00681 * 1 2 3 24 24 H 1.09003 * 109.46870 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47754 * 239.99299 * 2 1 3 26 26 H 1.09008 * 109.46945 * 119.99436 * 2 1 3 27 27 H 1.09001 * 109.47234 * 299.99823 * 9 7 6 28 28 H 1.08997 * 109.47426 * 60.00182 * 9 7 6 29 29 H 1.08998 * 109.47006 * 180.02562 * 9 7 6 30 30 H 1.08997 * 109.47541 * 54.99828 * 10 7 6 31 31 H 1.08998 * 109.46965 * 175.00371 * 10 7 6 32 32 H 0.96998 * 119.99940 * 180.02562 * 14 13 11 33 33 H 1.09002 * 109.47152 * 90.00252 * 21 20 3 34 34 H 1.09001 * 109.46980 * 330.00352 * 21 20 3 35 35 H 1.09004 * 109.47113 * 210.00333 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2696 2.0940 -1.1116 5 6 2.6994 3.3111 -0.9793 6 16 3.0829 4.3967 -2.3131 7 6 3.6013 5.8624 -1.3863 8 1 4.3984 5.5915 -0.6941 9 6 2.4108 6.4168 -0.6013 10 6 4.1109 6.9274 -2.3595 11 6 5.3568 6.4273 -3.0440 12 1 5.7461 5.4477 -2.8088 13 6 5.9999 7.2203 -3.9706 14 7 5.5256 8.4130 -4.2575 15 14 7.5440 6.6001 -4.8197 16 1 7.1698 5.8804 -6.0635 17 1 8.4191 7.7512 -5.1580 18 1 8.2704 5.6759 -3.9123 19 16 2.8335 3.7099 0.6778 20 6 2.2724 2.1002 1.1219 21 6 2.0901 1.5828 2.5256 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.6136 6.6878 -1.2935 28 1 2.0477 5.6582 0.0921 29 1 2.7228 7.2997 -0.0435 30 1 3.3441 7.1340 -3.1062 31 1 4.3396 7.8411 -1.8111 32 1 5.9779 8.9707 -4.9097 33 1 3.0152 1.1160 2.8638 34 1 1.2856 0.8475 2.5401 35 1 1.8376 2.4109 3.1880 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845325826.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:12 Heat of formation + Delta-G solvation = -3.640257 kcal Electronic energy + Delta-G solvation = -16122.370430 eV Core-core repulsion = 13564.725493 eV Total energy + Delta-G solvation = -2557.644937 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.82785 -36.58317 -34.99317 -34.15717 -32.41057 -29.64910 -28.09603 -25.38177 -25.34718 -24.40021 -22.45855 -19.83837 -19.34299 -18.53783 -17.74049 -16.70904 -16.51413 -16.16681 -15.23069 -15.09049 -14.83924 -14.60417 -14.09602 -13.89150 -13.81769 -13.55950 -13.41030 -13.27817 -13.03307 -12.76394 -12.67011 -12.49355 -12.40472 -11.99427 -11.67077 -11.58215 -11.33408 -11.22884 -10.59517 -10.46002 -10.39472 -10.01866 -8.44791 -8.22110 -6.30669 -0.39332 0.12418 0.25567 0.75551 1.39723 1.41346 1.51276 1.54944 1.72134 2.40366 3.13568 3.48641 3.91564 4.01390 4.02087 4.09703 4.37629 4.40596 4.45130 4.53513 4.74209 4.76842 4.84099 4.88016 5.00530 5.04944 5.11665 5.14035 5.26400 5.35578 5.43984 5.45304 5.74910 6.14083 6.67268 6.80863 7.37747 8.89291 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.030946 B = 0.004639 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.593603 B = 6034.188349 C = 6345.727375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.046 4.046 3 C 0.051 3.949 4 N -0.487 5.487 5 C -0.003 4.003 6 S -0.017 6.017 7 C -0.070 4.070 8 H 0.087 0.913 9 C -0.148 4.148 10 C 0.048 3.952 11 C -0.536 4.536 12 H 0.061 0.939 13 C 0.011 3.989 14 N -0.927 5.927 15 Si 0.953 3.047 16 H -0.277 1.277 17 H -0.280 1.280 18 H -0.265 1.265 19 S 0.149 5.851 20 C -0.235 4.235 21 C -0.071 4.071 22 H 0.062 0.938 23 H 0.034 0.966 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.106 0.894 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.006 0.994 31 H 0.028 0.972 32 H 0.264 0.736 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.647 -13.619 14.964 22.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.085 4.085 3 C -0.082 4.082 4 N -0.206 5.206 5 C -0.388 4.388 6 S 0.217 5.783 7 C -0.200 4.200 8 H 0.106 0.894 9 C -0.208 4.208 10 C 0.010 3.990 11 C -0.574 4.574 12 H 0.079 0.921 13 C -0.188 4.188 14 N -0.567 5.567 15 Si 0.779 3.221 16 H -0.203 1.203 17 H -0.205 1.205 18 H -0.190 1.190 19 S 0.401 5.599 20 C -0.360 4.360 21 C -0.130 4.130 22 H 0.082 0.918 23 H 0.054 0.946 24 H 0.102 0.898 25 H 0.088 0.912 26 H 0.124 0.876 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.024 0.976 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.404 -12.886 13.604 20.537 hybrid contribution 0.718 -0.398 0.116 0.829 sum -7.687 -13.284 13.720 20.586 Atomic orbital electron populations 1.21680 0.93449 1.02988 1.01577 1.20233 0.96879 0.87404 1.04032 1.20703 1.02085 0.99657 0.85793 1.66502 1.16596 1.04731 1.32769 1.28639 1.07909 1.00189 1.02036 1.86317 1.78612 1.07338 1.06067 1.23714 1.00870 0.95358 1.00078 0.89425 1.22276 0.96510 1.02010 0.99986 1.18823 0.95121 0.92311 0.92793 1.21563 1.10572 1.02176 1.23116 0.92111 1.25767 1.00664 0.94954 0.97408 1.70051 1.41691 1.10501 1.34484 0.85612 0.79484 0.78050 0.78983 1.20252 1.20501 1.18979 1.83901 1.63271 1.13433 0.99275 1.26246 1.10592 0.96789 1.02343 1.20389 1.04056 1.01911 0.86623 0.91848 0.94647 0.89770 0.91218 0.87580 0.91389 0.91384 0.89482 0.97558 0.95424 0.92665 0.89327 0.88356 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.89 71.98 0.71 -1.67 16 2 C -0.05 -0.91 5.86 29.85 0.17 -0.74 16 3 C 0.05 1.43 5.99 41.41 0.25 1.68 16 4 N -0.49 -17.62 10.59 -188.53 -2.00 -19.62 16 5 C 0.00 -0.11 7.39 130.55 0.96 0.85 16 6 S -0.02 -0.71 21.06 -56.49 -1.19 -1.90 16 7 C -0.07 -2.83 2.09 30.60 0.06 -2.76 16 8 H 0.09 3.46 7.74 -2.40 -0.02 3.45 16 9 C -0.15 -4.78 8.86 71.98 0.64 -4.14 16 10 C 0.05 2.39 4.44 29.85 0.13 2.53 16 11 C -0.54 -29.57 8.53 25.60 0.22 -29.35 16 12 H 0.06 3.32 7.60 -2.91 -0.02 3.30 16 13 C 0.01 0.60 5.46 84.65 0.46 1.07 16 14 N -0.93 -54.83 13.29 21.45 0.28 -54.54 16 15 Si 0.95 44.36 29.54 68.60 2.03 46.39 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 S 0.15 4.28 18.67 -56.49 -1.05 3.23 16 20 C -0.23 -5.71 6.57 24.58 0.16 -5.55 16 21 C -0.07 -1.01 9.80 71.24 0.70 -0.31 16 22 H 0.06 0.96 7.98 -2.39 -0.02 0.94 16 23 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.11 1.48 7.33 -2.38 -0.02 1.47 16 27 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.07 1.97 4.69 -13.19 -0.06 1.90 16 29 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 33 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.10 1.03 7.24 -2.39 -0.02 1.01 16 35 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -65.79 313.51 3.56 -62.23 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: 1.02 Total: 2.62 kcal Atomic # 6 Polarization: -42.88 SS G_CDS: 4.47 Total: -38.40 kcal Atomic # 7 Polarization: -72.45 SS G_CDS: -1.71 Total: -74.16 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -2.24 Total: 1.33 kcal Total: -65.79 3.56 -62.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845325826.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.587 kcal (2) G-P(sol) polarization free energy of solvation -65.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds