Wall clock time and date at job start Mon Mar 30 2020 01:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.46884 * 2 1 4 4 N 1.32095 * 122.70778 * 270.16714 * 3 2 1 5 5 C 1.29753 * 116.85721 * 180.31864 * 4 3 2 6 6 S 1.76201 * 124.95489 * 179.74395 * 5 4 3 7 7 C 1.80997 * 100.00190 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.46816 * 304.99599 * 7 6 5 9 9 C 1.52996 * 109.47302 * 64.99739 * 7 6 5 10 10 C 1.53002 * 109.47279 * 185.00200 * 7 6 5 11 11 C 1.50697 * 109.47366 * 64.99564 * 10 7 6 12 12 H 1.08002 * 119.99782 * 0.02562 * 11 10 7 13 13 C 1.37876 * 120.00046 * 180.02562 * 11 10 7 14 14 N 1.31509 * 120.00007 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99938 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47212 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47223 * 119.99574 * 15 13 11 18 18 H 1.48501 * 109.46840 * 239.99519 * 15 13 11 19 19 S 1.70967 * 110.09617 * 359.74446 * 5 4 3 20 20 C 1.33337 * 122.70885 * 90.00213 * 3 2 1 21 21 C 1.50703 * 125.94511 * 359.97438 * 20 3 2 22 22 H 1.08998 * 109.47086 * 60.00297 * 1 2 3 23 23 H 1.09003 * 109.47164 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47225 * 300.00192 * 1 2 3 25 25 H 1.09004 * 109.47225 * 239.99808 * 2 1 3 26 26 H 1.08998 * 109.47086 * 119.99703 * 2 1 3 27 27 H 1.09005 * 109.47140 * 300.00125 * 9 7 6 28 28 H 1.08998 * 109.47299 * 60.00156 * 9 7 6 29 29 H 1.09005 * 109.47016 * 180.02562 * 9 7 6 30 30 H 1.09003 * 109.47031 * 184.99892 * 10 7 6 31 31 H 1.09002 * 109.46878 * 304.99743 * 10 7 6 32 32 H 0.97004 * 120.00086 * 180.02562 * 14 13 11 33 33 H 1.09002 * 109.47152 * 179.71552 * 21 20 3 34 34 H 1.09001 * 109.46980 * 59.71652 * 21 20 3 35 35 H 1.09004 * 109.47113 * 299.71633 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2671 2.0949 -1.1115 5 6 2.7037 3.3095 -0.9793 6 16 3.0912 4.3938 -2.3130 7 6 3.6189 5.8562 -1.3862 8 1 2.8314 6.1503 -0.6924 9 6 4.8930 5.5317 -0.6036 10 6 3.8963 7.0040 -2.3591 11 6 2.6138 7.4055 -3.0410 12 1 1.6929 6.8935 -2.8039 13 6 2.6162 8.4265 -3.9676 14 7 3.7374 9.0502 -4.2560 15 14 1.0263 8.9247 -4.8124 16 1 -0.0855 8.0748 -4.3158 17 1 0.7323 10.3493 -4.5137 18 1 1.1683 8.7457 -6.2798 19 16 2.8483 3.7047 0.6778 20 6 2.2724 2.1001 1.1219 21 6 2.0892 1.5831 2.5256 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 4.6953 4.7140 0.0895 28 1 5.6805 5.2376 -1.2974 29 1 5.2105 6.4123 -0.0451 30 1 4.2984 7.8559 -1.8107 31 1 4.6194 6.6793 -3.1073 32 1 3.7390 9.7688 -4.9076 33 1 2.3691 2.3591 3.2381 34 1 2.7205 0.7073 2.6755 35 1 1.0453 1.3089 2.6784 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845325828.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:15 Heat of formation + Delta-G solvation = 12.597879 kcal Electronic energy + Delta-G solvation = -16126.914610 eV Core-core repulsion = 13569.973812 eV Total energy + Delta-G solvation = -2556.940799 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.61967 -34.81406 -33.93270 -32.22685 -31.53254 -27.87306 -26.96575 -24.23585 -23.46635 -23.41856 -20.85495 -18.61095 -18.13594 -16.45268 -16.37846 -15.34568 -14.88647 -14.55214 -14.19784 -13.97233 -13.52590 -13.14773 -13.06987 -12.78182 -12.64285 -12.36204 -12.08768 -11.90264 -11.71870 -11.24096 -11.13144 -10.97456 -10.72038 -10.65841 -10.50547 -9.79878 -9.69608 -9.37422 -9.17755 -9.07529 -8.75206 -8.45716 -6.98440 -6.10531 -4.13330 0.84324 1.38938 1.67221 1.97796 2.92954 3.03320 3.28779 3.36853 3.42376 4.40466 4.56538 4.92478 5.01237 5.21962 5.26742 5.27448 5.36077 5.43055 5.46415 5.52171 5.70941 5.74797 5.79330 5.80640 6.07238 6.11540 6.17204 6.36808 6.42556 6.50603 7.38915 7.45011 7.86232 7.90081 8.20180 8.91511 9.51987 11.00443 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.027835 B = 0.004827 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.683017 B = 5799.685525 C = 6326.764442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.046 4.046 3 C 0.078 3.922 4 N -0.467 5.467 5 C 0.026 3.974 6 S 0.043 5.957 7 C -0.088 4.088 8 H 0.088 0.912 9 C -0.155 4.155 10 C 0.041 3.959 11 C -0.526 4.526 12 H 0.064 0.936 13 C 0.062 3.938 14 N -0.893 5.893 15 Si 0.892 3.108 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.283 1.283 19 S 0.126 5.874 20 C -0.258 4.258 21 C -0.065 4.065 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.030 0.970 32 H 0.262 0.738 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.717 -14.103 12.475 18.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.086 4.086 3 C -0.056 4.056 4 N -0.186 5.186 5 C -0.359 4.359 6 S 0.278 5.722 7 C -0.218 4.218 8 H 0.106 0.894 9 C -0.215 4.215 10 C 0.003 3.997 11 C -0.564 4.564 12 H 0.083 0.917 13 C -0.140 4.140 14 N -0.531 5.531 15 Si 0.720 3.280 16 H -0.195 1.195 17 H -0.210 1.210 18 H -0.209 1.209 19 S 0.378 5.622 20 C -0.383 4.383 21 C -0.124 4.124 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.451 -13.371 11.103 17.440 hybrid contribution -1.066 -0.198 0.749 1.317 sum -2.517 -13.569 11.851 18.191 Atomic orbital electron populations 1.21691 0.94502 1.01596 1.02390 1.20070 0.96073 0.89526 1.02942 1.20121 1.01067 0.98062 0.86361 1.66528 1.17046 1.04527 1.30476 1.29156 1.05415 0.99902 1.01471 1.86319 1.78288 1.04168 1.03458 1.23994 0.99636 0.96811 1.01360 0.89393 1.22323 0.97521 1.01583 1.00086 1.19042 0.98309 0.89657 0.92707 1.21271 0.94433 1.17697 1.23002 0.91744 1.24967 0.96341 0.96085 0.96585 1.69953 1.25970 1.23541 1.33671 0.86518 0.83730 0.78323 0.79463 1.19465 1.20980 1.20857 1.84114 1.61903 1.14315 1.01829 1.25600 1.13625 0.98562 1.00507 1.20101 1.02226 1.00668 0.89394 0.92220 0.92210 0.92769 0.90341 0.90580 0.92982 0.91255 0.91003 0.94069 0.95145 0.92835 0.91672 0.90956 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.89 37.16 0.37 -1.11 16 2 C -0.05 -0.52 6.11 -27.88 -0.17 -0.69 16 3 C 0.08 1.18 5.99 -84.19 -0.50 0.67 16 4 N -0.47 -8.53 10.59 -10.94 -0.12 -8.64 16 5 C 0.03 0.47 7.38 51.88 0.38 0.85 16 6 S 0.04 0.86 21.07 -107.50 -2.26 -1.40 16 7 C -0.09 -1.73 2.08 -26.73 -0.06 -1.79 16 8 H 0.09 1.72 7.73 -51.92 -0.40 1.32 16 9 C -0.16 -2.53 8.86 37.16 0.33 -2.20 16 10 C 0.04 1.00 4.44 -27.88 -0.12 0.87 16 11 C -0.53 -14.14 8.53 -34.44 -0.29 -14.43 16 12 H 0.06 1.73 7.60 -52.49 -0.40 1.33 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -25.80 13.29 55.43 0.74 -25.07 16 15 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 S 0.13 1.92 18.68 -107.50 -2.01 -0.09 16 20 C -0.26 -3.53 6.57 -36.02 -0.24 -3.77 16 21 C -0.06 -0.62 9.54 36.01 0.34 -0.27 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.08 0.69 7.43 -51.93 -0.39 0.30 16 27 H 0.05 0.78 4.70 -35.30 -0.17 0.61 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.58 7.98 -51.93 -0.41 0.17 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 314.51 15.07 4.74 4.74 Total: -1.00 -29.73 314.51 -9.12 -38.85 By element: Atomic # 1 Polarization: 0.64 SS G_CDS: -5.13 Total: -4.49 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -0.06 Total: -20.24 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.62 Total: -33.71 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -4.27 Total: -1.49 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.73 -9.12 -38.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845325828.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.443 kcal (2) G-P(sol) polarization free energy of solvation -29.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds