Wall clock time and date at job start Mon Mar 30 2020 01:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 109.47133 * 2 1 4 4 N 1.32095 * 122.70515 * 90.02251 * 3 2 1 5 5 C 1.29759 * 116.85465 * 179.97438 * 4 3 2 6 6 S 1.76199 * 124.95322 * 179.97438 * 5 4 3 7 7 C 1.81002 * 100.00182 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47085 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.46976 * 180.02562 * 8 7 6 10 10 C 1.50693 * 109.47297 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99804 * 359.97438 * 10 9 8 12 12 C 1.37882 * 120.00324 * 179.97438 * 10 9 8 13 13 N 1.31511 * 119.99874 * 179.97438 * 12 10 9 14 14 Si 1.86806 * 119.99559 * 359.97438 * 12 10 9 15 15 H 1.48495 * 109.46995 * 90.00072 * 14 12 10 16 16 H 1.48495 * 109.46688 * 210.00202 * 14 12 10 17 17 H 1.48496 * 109.47065 * 330.00011 * 14 12 10 18 18 S 1.70965 * 110.09493 * 0.24333 * 5 4 3 19 19 C 1.33329 * 122.70629 * 270.00039 * 3 2 1 20 20 C 1.50696 * 125.94831 * 0.02562 * 19 3 2 21 21 H 1.08999 * 109.47312 * 60.00006 * 1 2 3 22 22 H 1.09004 * 109.47105 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47613 * 300.00269 * 1 2 3 24 24 H 1.08992 * 109.47174 * 239.99896 * 2 1 3 25 25 H 1.09007 * 109.47022 * 120.00148 * 2 1 3 26 26 H 1.09005 * 109.46889 * 299.99975 * 7 6 5 27 27 H 1.09000 * 109.47231 * 59.99947 * 7 6 5 28 28 H 1.09001 * 109.47131 * 299.99123 * 8 7 6 29 29 H 1.08996 * 109.47558 * 60.00200 * 8 7 6 30 30 H 1.09005 * 109.46779 * 299.99512 * 9 8 7 31 31 H 1.09004 * 109.47273 * 59.99075 * 9 8 7 32 32 H 0.97004 * 119.99624 * 180.02562 * 13 12 10 33 33 H 1.09006 * 109.47290 * 90.00444 * 20 19 3 34 34 H 1.09000 * 109.47459 * 210.00010 * 20 19 3 35 35 H 1.08997 * 109.47377 * 330.00298 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2706 2.0936 1.1115 5 6 2.7013 3.3104 0.9793 6 16 3.0851 4.3960 2.3130 7 6 3.6033 5.8618 1.3861 8 6 3.9962 6.9710 2.3640 9 6 4.4336 8.2102 1.5805 10 6 4.8200 9.3030 2.5435 11 1 4.7592 9.1310 3.6080 12 6 5.2511 10.5224 2.0658 13 7 5.5878 11.4762 2.9064 14 14 5.3569 10.8196 0.2246 15 1 4.0650 11.3648 -0.2639 16 1 6.4431 11.7919 -0.0581 17 1 5.6469 9.5383 -0.4678 18 16 2.8350 3.7093 -0.6778 19 6 2.2724 2.1000 -1.1219 20 6 2.0891 1.5831 -2.5255 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 4.4588 5.6112 0.7587 27 1 2.7806 6.2046 0.7587 28 1 3.1410 7.2217 2.9917 29 1 4.8191 6.6280 2.9911 30 1 5.2887 7.9599 0.9525 31 1 3.6105 8.5531 0.9536 32 1 5.8907 12.3342 2.5702 33 1 1.0761 1.8014 -2.8637 34 1 2.8057 2.0684 -3.1880 35 1 2.2526 0.5055 -2.5401 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845326808.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:11 Heat of formation + Delta-G solvation = 11.597485 kcal Electronic energy + Delta-G solvation = -15522.307852 eV Core-core repulsion = 12965.323672 eV Total energy + Delta-G solvation = -2556.984179 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.97513 -34.77428 -34.22371 -32.19681 -31.79177 -28.36058 -27.40270 -24.66259 -23.97122 -22.97711 -20.42847 -18.94139 -18.48152 -16.96733 -16.58190 -15.49003 -15.11117 -14.82033 -14.36550 -14.21910 -13.89299 -13.51843 -13.29986 -13.00772 -12.73203 -12.58233 -12.32474 -12.21840 -12.12677 -11.46276 -11.29570 -11.02825 -10.95826 -10.70119 -10.08576 -9.87988 -9.75184 -9.61706 -9.56787 -9.29187 -9.22853 -8.60173 -7.52233 -6.10038 -4.09350 0.49313 0.99286 1.17617 1.58890 2.46159 2.59473 3.26291 3.34250 3.36146 4.26397 4.39360 4.67142 4.77492 4.96785 5.05543 5.09908 5.15494 5.19342 5.24153 5.24613 5.48577 5.53798 5.62186 5.73629 5.83231 5.89496 6.08920 6.22390 6.31764 6.67172 7.13047 7.26079 7.53422 7.69468 8.45929 8.94269 9.51233 11.03215 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.037101 B = 0.003619 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.524153 B = 7735.989513 C = 8362.013894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.047 4.047 3 C 0.077 3.923 4 N -0.458 5.458 5 C 0.025 3.975 6 S 0.005 5.995 7 C -0.126 4.126 8 C -0.086 4.086 9 C -0.006 4.006 10 C -0.524 4.524 11 H 0.074 0.926 12 C 0.068 3.932 13 N -0.901 5.901 14 Si 0.879 3.121 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.265 1.265 18 S 0.130 5.870 19 C -0.236 4.236 20 C -0.071 4.071 21 H 0.054 0.946 22 H 0.061 0.939 23 H 0.058 0.942 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.019 0.981 31 H 0.015 0.985 32 H 0.264 0.736 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.148 -21.667 -10.735 25.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.087 4.087 3 C -0.057 4.057 4 N -0.176 5.176 5 C -0.361 4.361 6 S 0.239 5.761 7 C -0.275 4.275 8 C -0.126 4.126 9 C -0.045 4.045 10 C -0.562 4.562 11 H 0.092 0.908 12 C -0.134 4.134 13 N -0.539 5.539 14 Si 0.706 3.294 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.190 1.190 18 S 0.382 5.618 19 C -0.361 4.361 20 C -0.130 4.130 21 H 0.073 0.927 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.097 0.903 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.038 0.962 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.883 -20.909 -9.469 24.270 hybrid contribution -0.116 -0.299 -2.230 2.253 sum -7.999 -21.208 -11.699 25.508 Atomic orbital electron populations 1.21702 0.94269 1.01858 1.02402 1.20118 0.96234 0.89123 1.03269 1.20172 1.01168 0.98331 0.86074 1.66506 1.16040 1.04269 1.30761 1.28594 1.06604 0.99860 1.01035 1.85893 1.79454 1.05646 1.05102 1.24207 1.04708 0.95893 1.02737 1.21303 1.01660 0.92869 0.96721 1.19573 0.96151 0.92527 0.96294 1.21070 1.44429 0.96125 0.94544 0.90799 1.25017 0.94640 0.95950 0.97758 1.69908 1.45003 1.04576 1.34446 0.86790 0.78027 0.78390 0.86175 1.20207 1.21283 1.18983 1.84168 1.63095 1.13747 1.00822 1.25542 1.12432 0.97226 1.00898 1.20206 1.02441 1.01251 0.89088 0.92661 0.91993 0.92253 0.90251 0.90136 0.89116 0.89136 0.91259 0.91223 0.96249 0.96689 0.92616 0.90724 0.91234 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.89 37.16 0.37 -0.80 16 2 C -0.05 -0.43 6.11 -27.89 -0.17 -0.60 16 3 C 0.08 0.96 5.99 -84.19 -0.50 0.46 16 4 N -0.46 -6.98 10.59 -10.95 -0.12 -7.10 16 5 C 0.02 0.37 7.59 51.89 0.39 0.77 16 6 S 0.00 0.07 22.31 -107.50 -2.40 -2.33 16 7 C -0.13 -1.95 4.63 37.16 0.17 -1.77 16 8 C -0.09 -1.61 5.16 -26.73 -0.14 -1.74 16 9 C -0.01 -0.14 4.04 -27.88 -0.11 -0.25 16 10 C -0.52 -14.55 9.66 -34.44 -0.33 -14.88 16 11 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 12 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 13 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 14 Si 0.88 21.16 27.47 -169.99 -4.67 16.49 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 17 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 18 S 0.13 1.66 21.54 -107.50 -2.32 -0.66 16 19 C -0.24 -2.68 6.57 -36.02 -0.24 -2.92 16 20 C -0.07 -0.54 10.09 36.00 0.36 -0.17 16 21 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.08 0.55 6.69 -51.93 -0.35 0.20 16 25 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 26 H 0.09 1.33 7.98 -51.91 -0.41 0.92 16 27 H 0.09 1.32 7.97 -51.92 -0.41 0.91 16 28 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 31 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.47 6.74 -51.93 -0.35 0.12 16 LS Contribution 317.40 15.07 4.78 4.78 Total: -1.00 -30.89 317.40 -9.50 -40.39 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: -5.26 Total: -4.86 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -0.30 Total: -20.07 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.66 Total: -33.74 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -4.71 Total: -2.99 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.89 -9.50 -40.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845326808.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.986 kcal (2) G-P(sol) polarization free energy of solvation -30.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds