Wall clock time and date at job start Mon Mar 30 2020 01:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 109.47133 * 2 1 4 4 N 1.32095 * 122.70515 * 90.02251 * 3 2 1 5 5 C 1.29759 * 116.85465 * 179.97438 * 4 3 2 6 6 S 1.76199 * 124.95322 * 179.97438 * 5 4 3 7 7 C 1.81002 * 100.00182 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47085 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.46976 * 180.02562 * 8 7 6 10 10 C 1.50693 * 109.47297 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99804 * 359.97438 * 10 9 8 12 12 C 1.37882 * 120.00324 * 179.97438 * 10 9 8 13 13 N 1.31511 * 119.99874 * 179.97438 * 12 10 9 14 14 Si 1.86806 * 119.99559 * 359.97438 * 12 10 9 15 15 H 1.48495 * 109.46995 * 90.00072 * 14 12 10 16 16 H 1.48495 * 109.46688 * 210.00202 * 14 12 10 17 17 H 1.48496 * 109.47065 * 330.00011 * 14 12 10 18 18 S 1.70965 * 110.09493 * 0.24333 * 5 4 3 19 19 C 1.33329 * 122.70629 * 270.00039 * 3 2 1 20 20 C 1.50696 * 125.94831 * 0.02562 * 19 3 2 21 21 H 1.08999 * 109.47312 * 60.00006 * 1 2 3 22 22 H 1.09004 * 109.47105 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47613 * 300.00269 * 1 2 3 24 24 H 1.08992 * 109.47174 * 239.99896 * 2 1 3 25 25 H 1.09007 * 109.47022 * 120.00148 * 2 1 3 26 26 H 1.09005 * 109.46889 * 299.99975 * 7 6 5 27 27 H 1.09000 * 109.47231 * 59.99947 * 7 6 5 28 28 H 1.09001 * 109.47131 * 299.99123 * 8 7 6 29 29 H 1.08996 * 109.47558 * 60.00200 * 8 7 6 30 30 H 1.09005 * 109.46779 * 299.99512 * 9 8 7 31 31 H 1.09004 * 109.47273 * 59.99075 * 9 8 7 32 32 H 0.97004 * 119.99624 * 180.02562 * 13 12 10 33 33 H 1.09006 * 109.47290 * 90.00444 * 20 19 3 34 34 H 1.09000 * 109.47459 * 210.00010 * 20 19 3 35 35 H 1.08997 * 109.47377 * 330.00298 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2706 2.0936 1.1115 5 6 2.7013 3.3104 0.9793 6 16 3.0851 4.3960 2.3130 7 6 3.6033 5.8618 1.3861 8 6 3.9962 6.9710 2.3640 9 6 4.4336 8.2102 1.5805 10 6 4.8200 9.3030 2.5435 11 1 4.7592 9.1310 3.6080 12 6 5.2511 10.5224 2.0658 13 7 5.5878 11.4762 2.9064 14 14 5.3569 10.8196 0.2246 15 1 4.0650 11.3648 -0.2639 16 1 6.4431 11.7919 -0.0581 17 1 5.6469 9.5383 -0.4678 18 16 2.8350 3.7093 -0.6778 19 6 2.2724 2.1000 -1.1219 20 6 2.0891 1.5831 -2.5255 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 4.4588 5.6112 0.7587 27 1 2.7806 6.2046 0.7587 28 1 3.1410 7.2217 2.9917 29 1 4.8191 6.6280 2.9911 30 1 5.2887 7.9599 0.9525 31 1 3.6105 8.5531 0.9536 32 1 5.8907 12.3342 2.5702 33 1 1.0761 1.8014 -2.8637 34 1 2.8057 2.0684 -3.1880 35 1 2.2526 0.5055 -2.5401 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845326808.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:10 Heat of formation + Delta-G solvation = -6.159200 kcal Electronic energy + Delta-G solvation = -15523.077839 eV Core-core repulsion = 12965.323672 eV Total energy + Delta-G solvation = -2557.754167 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.92973 -36.48300 -35.02994 -34.21223 -32.48668 -30.10085 -28.29159 -25.79952 -25.05089 -24.21749 -22.08163 -19.94145 -19.43826 -18.89098 -17.78860 -16.60860 -16.51080 -16.11110 -15.79841 -15.14315 -14.93191 -14.58818 -14.36645 -14.09022 -13.96416 -13.76294 -13.72056 -13.21512 -13.11901 -12.79839 -12.71336 -12.10235 -11.96016 -11.84940 -11.75003 -11.62630 -11.43238 -11.37028 -10.76161 -10.63244 -10.54563 -10.22948 -8.62582 -8.28654 -6.33895 -0.48965 -0.01812 0.05660 0.63114 1.30763 1.38325 1.40287 1.51778 1.63119 2.37361 3.06953 3.40494 3.82607 3.84990 3.95005 4.04931 4.34374 4.39465 4.41765 4.47330 4.66668 4.70398 4.72617 4.85147 4.93943 4.97331 5.05085 5.12680 5.21517 5.39772 5.40299 5.49497 5.63756 6.27010 6.56086 6.74326 7.30739 8.88210 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.037101 B = 0.003619 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.524153 B = 7735.989513 C = 8362.013894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.046 4.046 3 C 0.052 3.948 4 N -0.480 5.480 5 C -0.003 4.003 6 S -0.017 6.017 7 C -0.112 4.112 8 C -0.079 4.079 9 C -0.004 4.004 10 C -0.535 4.535 11 H 0.032 0.968 12 C 0.003 3.997 13 N -0.953 5.953 14 Si 0.951 3.049 15 H -0.266 1.266 16 H -0.286 1.286 17 H -0.240 1.240 18 S 0.141 5.859 19 C -0.219 4.219 20 C -0.074 4.074 21 H 0.061 0.939 22 H 0.083 0.917 23 H 0.035 0.965 24 H 0.107 0.893 25 H 0.072 0.928 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.029 0.971 31 H 0.027 0.973 32 H 0.266 0.734 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.828 -23.663 -14.290 29.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.086 4.086 3 C -0.081 4.081 4 N -0.199 5.199 5 C -0.388 4.388 6 S 0.216 5.784 7 C -0.262 4.262 8 C -0.118 4.118 9 C -0.044 4.044 10 C -0.574 4.574 11 H 0.050 0.950 12 C -0.194 4.194 13 N -0.593 5.593 14 Si 0.774 3.226 15 H -0.191 1.191 16 H -0.212 1.212 17 H -0.163 1.163 18 S 0.393 5.607 19 C -0.344 4.344 20 C -0.133 4.133 21 H 0.080 0.920 22 H 0.102 0.898 23 H 0.055 0.945 24 H 0.125 0.875 25 H 0.091 0.909 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.573 -22.933 -13.020 27.730 hybrid contribution 0.053 0.212 -1.094 1.116 sum -8.521 -22.721 -14.114 28.072 Atomic orbital electron populations 1.21679 0.93547 1.03020 1.01554 1.20254 0.96772 0.87289 1.04261 1.20689 1.02019 0.99756 0.85672 1.66488 1.15995 1.04678 1.32717 1.28402 1.08618 1.00089 1.01733 1.85867 1.80334 1.06108 1.06045 1.23941 1.05539 0.94924 1.01773 1.21055 1.01154 0.92698 0.96887 1.19504 0.96784 0.92420 0.95654 1.21460 1.44077 0.98007 0.93810 0.94997 1.26055 0.94219 0.95573 1.03560 1.70076 1.46687 1.05355 1.37203 0.85640 0.78370 0.79272 0.79296 1.19054 1.21229 1.16316 1.84025 1.62715 1.14927 0.99073 1.26103 1.09876 0.95951 1.02485 1.20434 1.03658 1.02580 0.86595 0.92014 0.89836 0.94548 0.87465 0.90918 0.88045 0.88019 0.91942 0.91927 0.95303 0.95444 0.92477 0.89134 0.90242 0.88084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.89 71.98 0.71 -1.23 16 2 C -0.05 -0.73 6.11 29.85 0.18 -0.55 16 3 C 0.05 1.20 5.99 41.41 0.25 1.45 16 4 N -0.48 -14.32 10.59 -188.54 -2.00 -16.32 16 5 C 0.00 -0.10 7.59 130.55 0.99 0.89 16 6 S -0.02 -0.53 22.31 -56.49 -1.26 -1.79 16 7 C -0.11 -3.35 4.63 71.98 0.33 -3.01 16 8 C -0.08 -2.93 5.16 30.60 0.16 -2.77 16 9 C 0.00 -0.19 4.04 29.85 0.12 -0.07 16 10 C -0.54 -30.39 9.66 25.60 0.25 -30.15 16 11 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 12 C 0.00 0.15 5.47 84.66 0.46 0.61 16 13 N -0.95 -59.63 13.96 21.45 0.30 -59.33 16 14 Si 0.95 42.97 27.47 68.60 1.88 44.85 16 15 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 16 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 17 H -0.24 -9.79 6.54 99.48 0.65 -9.14 16 18 S 0.14 3.31 21.54 -56.49 -1.22 2.10 16 19 C -0.22 -4.36 6.57 24.57 0.16 -4.20 16 20 C -0.07 -0.81 10.09 71.23 0.72 -0.09 16 21 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 22 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 23 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.11 1.07 6.69 -2.39 -0.02 1.06 16 25 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.10 2.79 7.98 -2.39 -0.02 2.77 16 27 H 0.10 2.79 7.97 -2.40 -0.02 2.77 16 28 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.06 2.38 8.14 -2.39 -0.02 2.37 16 30 H 0.03 1.23 7.20 -2.38 -0.02 1.21 16 31 H 0.03 1.15 7.57 -2.39 -0.02 1.13 16 32 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 33 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.10 0.72 6.74 -2.39 -0.02 0.70 16 Total: -1.00 -68.67 317.40 3.05 -65.61 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: 1.01 Total: 3.99 kcal Atomic # 6 Polarization: -43.45 SS G_CDS: 4.34 Total: -39.11 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -1.70 Total: -75.65 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.88 Total: 44.85 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -2.48 Total: 0.31 kcal Total: -68.67 3.05 -65.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845326808.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.451 kcal (2) G-P(sol) polarization free energy of solvation -68.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds