Wall clock time and date at job start Mon Mar 30 2020 01:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.33342 * 122.70307 * 84.73272 * 4 2 1 6 6 S 1.76170 * 108.10252 * 179.88360 * 5 4 2 7 7 C 1.70967 * 90.35500 * 0.32091 * 6 5 4 8 8 S 1.76208 * 124.95038 * 179.83666 * 7 6 5 9 9 C 1.81001 * 99.99882 * 359.97357 * 8 7 6 10 10 C 1.53002 * 109.47032 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47139 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.46918 * 180.02562 * 11 10 9 13 13 H 1.07992 * 120.00115 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99440 * 180.02562 * 12 11 10 15 15 N 1.31508 * 120.00662 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99459 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47304 * 89.99939 * 16 14 12 18 18 H 1.48504 * 109.47216 * 209.99884 * 16 14 12 19 19 H 1.48495 * 109.47425 * 329.99607 * 16 14 12 20 20 N 1.29758 * 110.09916 * 359.81391 * 7 6 5 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 24 24 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 25 25 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 28 28 H 1.07993 * 125.94837 * 0.02562 * 5 4 2 29 29 H 1.08996 * 109.47303 * 300.00201 * 9 8 7 30 30 H 1.08999 * 109.46872 * 60.00021 * 9 8 7 31 31 H 1.08996 * 109.47358 * 300.00310 * 10 9 8 32 32 H 1.09004 * 109.46702 * 60.00271 * 10 9 8 33 33 H 1.08996 * 109.47430 * 300.00488 * 11 10 9 34 34 H 1.08999 * 109.46638 * 60.00243 * 11 10 9 35 35 H 0.96994 * 120.00658 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.1755 -0.0997 -2.4070 6 16 2.7854 -1.2787 -3.5652 7 6 2.7807 -2.4861 -2.3547 8 16 3.2741 -4.1602 -2.5969 9 6 3.7163 -4.1069 -4.3512 10 6 4.1895 -5.4909 -4.8002 11 6 4.5627 -5.4460 -6.2833 12 6 5.0282 -6.8094 -6.7256 13 1 5.0556 -7.6260 -6.0194 14 6 5.4202 -7.0138 -8.0316 15 7 5.3873 -6.0192 -8.8914 16 14 5.9979 -8.7035 -8.5797 17 1 4.8362 -9.4901 -9.0665 18 1 6.9899 -8.5564 -9.6749 19 1 6.6269 -9.4075 -7.4335 20 7 2.3612 -1.9898 -1.2316 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5137 0.8900 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.9577 0.9377 -2.6134 29 1 2.8453 -3.8127 -4.9367 30 1 4.5169 -3.3829 -4.5022 31 1 5.0607 -5.7847 -4.2146 32 1 3.3891 -6.2152 -4.6490 33 1 3.6913 -5.1525 -6.8685 34 1 5.3629 -4.7216 -6.4347 35 1 5.6627 -6.1631 -9.8103 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845329271.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:25 Heat of formation + Delta-G solvation = 10.438336 kcal Electronic energy + Delta-G solvation = -15412.765692 eV Core-core repulsion = 12855.731248 eV Total energy + Delta-G solvation = -2557.034444 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.96978 -35.29811 -34.63050 -32.15407 -29.69753 -27.75961 -27.43846 -25.85339 -23.75500 -22.32769 -20.40829 -19.18845 -18.52852 -16.76773 -16.21803 -15.41067 -15.16363 -14.76379 -14.58692 -14.31864 -14.02310 -13.65974 -13.17746 -12.62998 -12.45269 -12.23885 -11.98969 -11.95178 -11.46184 -11.41094 -11.14293 -10.98355 -10.93525 -10.66704 -10.43318 -9.95045 -9.84214 -9.57404 -9.43696 -9.19402 -9.17134 -8.42207 -7.50599 -6.07036 -4.10117 0.57310 1.08728 1.24475 1.69537 2.53849 2.66266 3.29141 3.35631 3.39068 4.17550 4.41002 4.65797 4.87935 5.02300 5.11382 5.22390 5.29783 5.33013 5.33952 5.36218 5.54165 5.56764 5.73270 5.87785 5.96340 5.98108 6.05548 6.36121 6.52126 6.86911 7.55365 7.58437 7.65624 7.90838 8.31239 8.96025 9.54602 11.04218 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.056007 B = 0.003090 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.816931 B = 9058.324620 C = 9383.083387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.022 4.022 3 C -0.145 4.145 4 C 0.088 3.912 5 C -0.271 4.271 6 S 0.137 5.863 7 C 0.028 3.972 8 S -0.003 6.003 9 C -0.121 4.121 10 C -0.094 4.094 11 C 0.029 3.971 12 C -0.523 4.523 13 H 0.057 0.943 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.894 3.106 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 N -0.463 5.463 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.062 0.938 24 H 0.088 0.912 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.176 0.824 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.698 14.250 14.705 21.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.043 4.043 3 C -0.202 4.202 4 C -0.047 4.047 5 C -0.414 4.414 6 S 0.388 5.612 7 C -0.358 4.358 8 S 0.232 5.768 9 C -0.270 4.270 10 C -0.134 4.134 11 C -0.010 4.010 12 C -0.561 4.561 13 H 0.076 0.924 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.722 3.278 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 N -0.182 5.182 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.081 0.919 24 H 0.106 0.894 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.193 0.807 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.352 12.968 14.676 20.919 hybrid contribution -0.043 0.706 -0.581 0.915 sum -7.395 13.674 14.095 20.984 Atomic orbital electron populations 1.21811 0.93722 1.02395 1.01953 1.19694 0.95902 0.94907 0.93791 1.21885 1.01443 0.94750 1.02162 1.20263 1.00042 0.88627 0.95772 1.26643 1.13586 1.05040 0.96160 1.84297 1.61098 1.00971 1.14839 1.28725 1.06174 1.05365 0.95497 1.85855 1.78153 0.98511 1.14277 1.24203 1.05038 1.05858 0.91886 1.21504 1.00593 0.90298 1.00960 1.19104 0.96951 0.97651 0.87319 1.21187 1.43967 0.95701 0.95284 0.92442 1.25014 0.95633 0.96942 0.96766 1.69949 1.48043 1.31117 1.04253 0.86563 0.78588 0.84297 0.78398 1.20593 1.21184 1.19792 1.66504 1.15828 1.11627 1.24238 0.92261 0.92509 0.91938 0.89393 0.92326 0.91828 0.92302 0.80720 0.89088 0.89095 0.91850 0.91859 0.96187 0.96179 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.18 37.16 0.34 -0.84 16 2 C -0.02 -0.21 3.33 -91.77 -0.31 -0.51 16 3 C -0.14 -1.06 8.70 37.16 0.32 -0.74 16 4 C 0.09 1.11 5.72 -84.19 -0.48 0.63 16 5 C -0.27 -3.12 10.34 29.02 0.30 -2.82 16 6 S 0.14 1.79 21.54 -107.50 -2.32 -0.52 16 7 C 0.03 0.43 7.59 51.89 0.39 0.82 16 8 S 0.00 -0.04 22.31 -107.50 -2.40 -2.44 16 9 C -0.12 -1.97 4.63 37.16 0.17 -1.79 16 10 C -0.09 -1.82 5.16 -26.73 -0.14 -1.96 16 11 C 0.03 0.71 4.97 -27.88 -0.14 0.57 16 12 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 16 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 N -0.46 -7.17 10.59 -10.94 -0.12 -7.28 16 21 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.38 6.93 -51.93 -0.36 0.02 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.18 1.51 6.98 -52.49 -0.37 1.15 16 29 H 0.09 1.44 7.97 -51.92 -0.41 1.02 16 30 H 0.09 1.44 7.97 -51.92 -0.41 1.02 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 320.08 15.07 4.82 4.82 Total: -1.00 -29.77 320.08 -9.56 -39.32 By element: Atomic # 1 Polarization: 0.47 SS G_CDS: -5.32 Total: -4.86 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 0.06 Total: -19.78 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 0.62 Total: -32.78 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -4.71 Total: -2.96 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.77 -9.56 -39.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845329271.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.763 kcal (2) G-P(sol) polarization free energy of solvation -29.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds